pycom111g05480

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000438
Physical Location & Seq
Reverse (-)
3509222 .. 3510076
855 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g05480.1

Sequence Viewer

Length: 855 bp
ATGGGAACAAACATGCCCACCATGAAAACTAAAGACTTTGTGTGGGCATGCATAGGTGACTTTAACATGCAGAAAATGATATTTGATATGATGTTAAAAATCAACAGCAGCCGGAAACTGGCACAACGGGCTGTTTGCAACTCGGCGCATGACCTCGAACCGGAAGCATTCACCCTGATACCCGAGGTTTTGCCAATTGGCCCGCTCTTGGCAAGCAGCCGGCAAGGGAATTCGGCTGGGTACTTCTGGCCGCAGGACTCAACTTGCTTAGAGTGGCTGGACCAACAGCCACCCAGCTCAGTGATCTATGTTGCATTTGGCAGCTTCACAGTTTTCGATCCAACCCAATTCAAAGAATTGGCTTTGGCTCTCGAATTATCCGAGAGGCCATTCCTTTGGGTCGTGAGGTCAGATACCACTGACAGTACTTGTGATCCCTACCCGGAAGGATATCTAGAGCGTGTAGCCTCTCGCGGCCTGATGGTCAGTTGGGCGCCTCAACAGAAGGTCCTGGCTCATCCTTCGATTGCTTGCTTCGCAAGTCACTGCGGGTGGAACTCCACCCTTGAAGGCATAAGCAATGGAGTTCCTATATTGTGCTGGCCATACTTTGCCGACCAGTTCATCAATGAGAGCTACATTTGTGATGTTTGGAAGGCGGGACTGAAATTCGATAGGAACGAAAGCGGGCTTATCACGAAAGAAGAAATCAAGAACAAGGTGGAACAGCTGCTTGGTGTTGAAGAATTCAAAGAAAGAGCTTCCAAACTTATGGAATTTGCCATGACCAGTATCAAAGAAGGTGGCAAATCTAACAAGAATTTTAACAATTTTATTGAATGGCTCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

285

Amino Acids

32.12

Weight (kDa)

5.16

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 99 - 257 1.6e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 474
AciI CCGC 6 cut(s) 203, 251, 474, 549, 659, 687
AclWI GGATC 2 cut(s) 332, 428
AcoI YGGCCR 2 cut(s) 248, 602
AcsI RAATTY 5 cut(s) 229, 668, 746, 776, 820
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 2 cut(s) 242, 427
AfiI CCNNNNNNNGG 3 cut(s) 118, 160, 208
AgsI TTSAA 5 cut(s) 352, 569, 743, 751, 839
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AluBI AGCT 5 cut(s) 297, 324, 636, 730, 761
AluI AGCT 5 cut(s) 297, 324, 636, 730, 761
AlwI GGATC 2 cut(s) 332, 428
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 5 cut(s) 199, 248, 386, 475, 602
ApeKI GCWGC 4 cut(s) 108, 216, 321, 730
ApoI RAATTY 5 cut(s) 229, 668, 746, 776, 820
AspLEI GCGC 2 cut(s) 148, 496
AspS9I GGNCC 3 cut(s) 200, 280, 508
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 68, 163
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 2 cut(s) 280, 508
BalI TGGCCA 1 cut(s) 604
BanI GGYRCC 1 cut(s) 493
BbvI GCAGC 4 cut(s) 120, 228, 333, 717
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 512
BcnI CCSGG 1 cut(s) 443
BfaI CTAG 1 cut(s) 455
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 6 cut(s) 109, 217, 251, 322, 475, 731
BlsI GCNGC 6 cut(s) 110, 218, 252, 323, 476, 732
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 443, 512
Bme18I GGWCC 2 cut(s) 280, 508
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 3 cut(s) 200, 280, 508
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 2 cut(s) 443, 512
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 160, 208
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 3 cut(s) 123, 619, 789
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 3 cut(s) 118, 160, 208
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 123, 619, 789
BseXI GCAGC 4 cut(s) 120, 228, 333, 717
BseYI CCCAGC 2 cut(s) 236, 293
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 5 cut(s) 201, 250, 388, 477, 604
BshNI GGYRCC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 4 cut(s) 112, 161, 220, 443
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 3 cut(s) 118, 160, 208
BsmFI GGGAC 1 cut(s) 675
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 5 cut(s) 201, 250, 388, 477, 604
BsoBI CYCGRG 1 cut(s) 182
Bsp143I GATC 3 cut(s) 303, 337, 433
BspACI CCGC 6 cut(s) 203, 251, 474, 549, 659, 687
BspANI GGCC 5 cut(s) 201, 250, 388, 477, 604
BspCNI CTCAG 1 cut(s) 311
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 495
BspPI GGATC 2 cut(s) 332, 428
BspT107I GGYRCC 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 3 cut(s) 123, 619, 789
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 303, 337, 433
BssNI GRCGYC 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 331, 425
BstACI GRCGYC 1 cut(s) 494
BstC8I GCNNGC 7 cut(s) 49, 203, 214, 221, 532, 602, 689
BstDEI CTNAG 2 cut(s) 268, 298
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 148, 496
BstKTI GATC 3 cut(s) 306, 340, 436
BstMBI GATC 3 cut(s) 303, 337, 433
BstMWI GCNNNNNNNGC 2 cut(s) 128, 536
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 3 cut(s) 16, 51, 70
BstSCI CCNGG 2 cut(s) 441, 510
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 120, 228, 333, 717
BstXI CCANNNNNNTGG 2 cut(s) 396, 772
BsuRI GGCC 5 cut(s) 201, 250, 388, 477, 604
BtsCI GGATG 1 cut(s) 517
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 3 cut(s) 306, 417, 544
Cac8I GCNNGC 7 cut(s) 49, 203, 214, 221, 532, 602, 689
CfoI GCGC 2 cut(s) 148, 496
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 200, 280, 508
Csp6I GTAC 2 cut(s) 241, 426
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 6 cut(s) 13, 22, 48, 67, 149, 784
CviQI GTAC 2 cut(s) 241, 426
DdeI CTNAG 2 cut(s) 268, 298
DinI GGCGCC 1 cut(s) 495
DpnI GATC 3 cut(s) 305, 339, 435
DpnII GATC 3 cut(s) 303, 337, 433
EaeI YGGCCR 2 cut(s) 248, 602
Eco32I GATATC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 280, 508
Eco88I CYCGRG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 2 cut(s) 229, 746
EcoRII CCWGG 1 cut(s) 510
EcoRV GATATC 1 cut(s) 452
EcoT22I ATGCAT 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 6 cut(s) 16, 25, 51, 70, 152, 787
FaqI GGGAC 1 cut(s) 675
FatI CATG 6 cut(s) 12, 21, 47, 66, 148, 783
FauI CCCGC 4 cut(s) 210, 542, 652, 680
Fnu4HI GCNGC 6 cut(s) 109, 217, 251, 322, 475, 731
FokI GGATG 1 cut(s) 504
Fsp4HI GCNGC 6 cut(s) 109, 217, 251, 322, 475, 731
FspBI CTAG 1 cut(s) 455
GlaI GCGC 2 cut(s) 147, 495
GluI GCNGC 6 cut(s) 109, 217, 251, 322, 475, 731
GsaI CCCAGC 2 cut(s) 240, 297
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 5 cut(s) 201, 250, 388, 477, 604
HapII CCGG 4 cut(s) 112, 161, 220, 443
HhaI GCGC 2 cut(s) 148, 496
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 6 cut(s) 16, 25, 51, 70, 152, 787
Hin6I GCGC 2 cut(s) 146, 494
HinP1I GCGC 2 cut(s) 146, 494
HinfI GANTC 1 cut(s) 257
HpaII CCGG 4 cut(s) 112, 161, 220, 443
HphI GGTGA 2 cut(s) 68, 163
Hpy188I TCNGA 2 cut(s) 382, 412
Hpy188III TCNNGA 5 cut(s) 371, 403, 455, 697, 712
HpyAV CCTTC 6 cut(s) 440, 499, 531, 563, 649, 794
HpyCH4III ACNGT 2 cut(s) 331, 425
HpyCH4V TGCA 4 cut(s) 51, 70, 138, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 536
HpyF3I CTNAG 2 cut(s) 268, 298
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 6 cut(s) 16, 25, 51, 70, 152, 787
HspAI GCGC 2 cut(s) 146, 494
KasI GGCGCC 1 cut(s) 493
KroI GCCGGC 1 cut(s) 219
KroNI GCCGGC 1 cut(s) 221
Kzo9I GATC 3 cut(s) 303, 337, 433
Lsp1109I GCAGC 4 cut(s) 120, 228, 333, 717
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 56, 542
MalI GATC 3 cut(s) 305, 339, 435
MbiI CCGCTC 1 cut(s) 205
MboI GATC 3 cut(s) 303, 337, 433
MboII GAAGA 2 cut(s) 716, 755
MfeI CAATTG 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 604
MluNI TGGCCA 1 cut(s) 604
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 6 cut(s) 164, 178, 378, 399, 478, 507
Mox20I TGGCCA 1 cut(s) 604
Mph1103I ATGCAT 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 219
MscI TGGCCA 1 cut(s) 604
MseI TTAA 3 cut(s) 63, 95, 825
Msp20I TGGCCA 1 cut(s) 604
MspA1I CMGCKG 1 cut(s) 730
MspI CCGG 4 cut(s) 112, 161, 220, 443
MspR9I CCNGG 2 cut(s) 443, 512
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 128, 536
NaeI GCCGGC 1 cut(s) 221
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 1 cut(s) 443
NdeII GATC 3 cut(s) 303, 337, 433
NgoMIV GCCGGC 1 cut(s) 219
NlaIII CATG 6 cut(s) 16, 25, 51, 70, 152, 787
NlaIV GGNNCC 1 cut(s) 495
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 2 cut(s) 56, 542
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 3 cut(s) 16, 51, 70
PaeI GCATGC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 678
PctI GAATGC 1 cut(s) 167
PdiI GCCGGC 1 cut(s) 221
PkrI GCNGC 6 cut(s) 110, 218, 252, 323, 476, 732
PleI GAGTC 1 cut(s) 251
PluTI GGCGCC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 510
PspFI CCCAGC 2 cut(s) 236, 293
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 3 cut(s) 200, 280, 508
PspPPI RGGWCCY 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 730
RsaI GTAC 2 cut(s) 242, 427
RsaNI GTAC 2 cut(s) 241, 426
SaqAI TTAA 3 cut(s) 63, 95, 825
SatI GCNGC 6 cut(s) 109, 217, 251, 322, 475, 731
Sau3AI GATC 3 cut(s) 303, 337, 433
Sau96I GGNCC 3 cut(s) 200, 280, 508
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 443, 512
SfoI GGCGCC 1 cut(s) 495
SinI GGWCC 2 cut(s) 280, 508
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SphI GCATGC 1 cut(s) 51
SsiI CCGC 6 cut(s) 203, 251, 474, 549, 659, 687
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 2 cut(s) 441, 510
TaaI ACNGT 2 cut(s) 331, 425
TaqI TCGA 5 cut(s) 156, 336, 372, 524, 672
TatI WGTACW 1 cut(s) 425
TauI GCSGC 2 cut(s) 253, 477
Tru1I TTAA 3 cut(s) 63, 95, 825
Tru9I TTAA 3 cut(s) 63, 95, 825
TscAI CASTG 3 cut(s) 306, 424, 551
TseFI GTSAC 2 cut(s) 56, 542
TseI GCWGC 4 cut(s) 108, 216, 321, 730
Tsp45I GTSAC 2 cut(s) 56, 542
TspDTI ATGAA 2 cut(s) 38, 613
TspRI CASTG 3 cut(s) 306, 424, 551
VpaK11BI GGWCC 2 cut(s) 280, 508
XapI RAATTY 5 cut(s) 229, 668, 746, 776, 820
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 3 cut(s) 16, 51, 70
XspI CTAG 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 427
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.