Rh2DG607600

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000438
Physical Location & Seq
Forward (+)
84132551 .. 84134296
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG607600.1

Sequence Viewer

Length: 1191 bp
ATGAGCAAGCCTCATATTGTAGCTATTCCTTACCCGGCACAAGGCCATGTAATTCCCTTGATGGAGTTGTCACAATGCTTAGTAAATCATGGCTTCAAAGTCACATTTGTGAACACAGAGTTTAATCACAAGCGAATCATGAATGCTCAGGCTGATGAAAGTCATATAAGGAATGATCATATCAATCAGGTCCCAATTTCAGATGGGTTAGAACTCTGGGAGGACAGAAATGATCTAGGGAAGTTATCTGAAGCAATACAAAGAGTCATGCCTGTGAAGTTGGAGGAGCTCATACAGAAGATCAACCAAGGGGAAGGTGATAAAGTCACTTGTGTCATTGCTGATGAGAGTTGCGGATGGGCTCTGGAAGTGGCACGAAAAATGAAGATCAGGCGGGTAGTTGCATTTTGGCCTGCATCAGCTGCAGCTTTGGAGGTGATACTGTGTATCCCCAAGTTTATTCAGGAAGGAATTATTCACAAAGATGGAGCTGTCTTGAAAAGCCAGATGGTTGAGTTGGCACCAAACATGCCCACAATGAAAACTAAAGACTTCATATGGGCATCCATTGGTGACTCAACCACTCAGGAAATCATATTCCAAGTTATGGAAAGAAGCAACAAGACCGTGAAATTGGCTGACAGACTAGTTTGCAACTCAGCATTCGACCTTGAACCAGCAGCATTCACCTTGGAACCAACAACATTCACCTTGGCACCAGACATTTTACCTATAGGCCCGCTTTTGGCGAGCAGCCGGCTTGGAAAAACAGCCGGCAGCTTCTGGGCAGAAGACTCAACTTGCCTAGAATGGCTTGATCAACAATCACCTTCCTCAGTCATCTATGTTGCTTTTGGAAGCTTCACAGTTTTTGATCAAACCCAATTCCAAGAATTGGCTTTGGCTCTTGAACTGTCCAATAGGCCATTCCTTTGGGTTGTGAGGCCAGACATATCTGAAAGTACTCCCTACCCTGAAGGATATGAAGAAAGAGTGGGATTAAGGCTTGATAAGAATAAAAGTGGGATCATAACGAAAGGAGAAATCAAGAACAAGGTGGAACAAGTCCTTGGCGGCAAAAATTTCAGTGCCAGGGCTTCAAAACTCAAGGAACTAGCCATGATCAATGTCAGAAAAGGTGGGCAGTCCAACATGACCTTCAAGAATTTTATGGAATGGATGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

396

Amino Acids

44.34

Weight (kDa)

6.05

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 6 - 65 7.2e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 520, 715
AccB7I CCANNNNNTGG 2 cut(s) 607, 895
AciI CCGC 4 cut(s) 354, 394, 740, 1074
AclWI GGATC 1 cut(s) 1034
AcsI RAATTY 2 cut(s) 1081, 1165
AcuI CTGAAG 2 cut(s) 270, 996
AfaI GTAC 1 cut(s) 964
AfiI CCNNNNNNNGG 4 cut(s) 41, 607, 745, 895
AgsI TTSAA 6 cut(s) 97, 499, 674, 911, 1101, 1162
AhlI ACTAGT 1 cut(s) 646
AjnI CCWGG 1 cut(s) 1091
AjuI GAANNNNNNNTTGG 6 cut(s) 911, 943, 1053, 1085, 1142, 1174
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 7 cut(s) 23, 289, 422, 428, 491, 780, 861
AluI AGCT 7 cut(s) 23, 289, 422, 428, 491, 780, 861
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 1 cut(s) 1034
AlwNI CAGNNNCTG 1 cut(s) 783
AoxI GGCC 5 cut(s) 43, 410, 736, 923, 944
ApeKI GCWGC 5 cut(s) 422, 425, 680, 753, 777
ApoI RAATTY 2 cut(s) 1081, 1165
AspS9I GGNCC 2 cut(s) 190, 737
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 6 cut(s) 329, 448, 584, 679, 700, 819
AvaII GGWCC 1 cut(s) 190
BanI GGYRCC 2 cut(s) 520, 715
BanII GRGCYC 2 cut(s) 291, 364
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 5 cut(s) 409, 437, 692, 765, 789
BccI CCATC 5 cut(s) 55, 197, 351, 479, 502
BciT130I CCWGG 1 cut(s) 1093
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 4 cut(s) 175, 817, 874, 1122
BcnI CCSGG 1 cut(s) 35
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 4 cut(s) 236, 647, 806, 1115
BfmI CTRYAG 2 cut(s) 423, 732
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 6 cut(s) 423, 426, 681, 754, 778, 1075
BlsI GCNGC 6 cut(s) 424, 427, 682, 755, 779, 1076
BmcAI AGTACT 1 cut(s) 964
Bme1390I CCNGG 2 cut(s) 35, 1093
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 190, 737
BmiI GGNNCC 4 cut(s) 192, 522, 696, 717
BmrFI CCNGG 2 cut(s) 35, 1093
BmsI GCATC 2 cut(s) 425, 572
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 1091
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 307, 690, 711, 1069, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 607, 745, 895
Bse118I RCCGGY 2 cut(s) 756, 773
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 1093
BseDI CCNNGG 5 cut(s) 307, 690, 711, 1069, 1092
BseGI GGATG 3 cut(s) 362, 563, 1185
BseLI CCNNNNNNNGG 4 cut(s) 41, 607, 745, 895
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 161, 599, 672, 849
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 5 cut(s) 409, 437, 692, 765, 789
BshFI GGCC 5 cut(s) 45, 412, 738, 925, 946
BshNI GGYRCC 2 cut(s) 520, 715
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 3 cut(s) 35, 757, 774
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 41, 607, 745, 895
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 3 cut(s) 148, 662, 683
BsnI GGCC 5 cut(s) 45, 412, 738, 925, 946
Bsp1286I GDGCHC 2 cut(s) 291, 364
Bsp143I GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
BspACI CCGC 4 cut(s) 354, 394, 740, 1074
BspANI GGCC 5 cut(s) 45, 412, 738, 925, 946
BspCNI CTCAG 4 cut(s) 160, 598, 671, 848
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 4 cut(s) 192, 522, 696, 717
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 1034
BspT107I GGYRCC 2 cut(s) 520, 715
BsrDI GCAATG 1 cut(s) 336
BsrFI RCCGGY 2 cut(s) 756, 773
BssAI RCCGGY 2 cut(s) 756, 773
BssECI CCNNGG 5 cut(s) 307, 690, 711, 1069, 1092
BssMI GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
BssT1I CCWWGG 4 cut(s) 307, 690, 711, 1069
Bst2UI CCWGG 1 cut(s) 1093
Bst4CI ACNGT 4 cut(s) 444, 628, 868, 915
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 6 cut(s) 8, 414, 740, 751, 758, 775
BstDEI CTNAG 5 cut(s) 79, 147, 585, 658, 835
BstF5I GGATG 3 cut(s) 362, 563, 1185
BstKTI GATC 8 cut(s) 178, 235, 303, 390, 820, 877, 1029, 1125
BstMBI GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 1093
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 33, 1091
BstSFI CTRYAG 2 cut(s) 423, 732
BstV1I GCAGC 5 cut(s) 409, 437, 692, 765, 789
BstV2I GAAGAC 1 cut(s) 798
BstXI CCANNNNNNTGG 1 cut(s) 933
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 5 cut(s) 45, 412, 738, 925, 946
BtsCI GGATG 3 cut(s) 362, 563, 1185
BtsIMutI CAGTG 1 cut(s) 1093
Cac8I GCNNGC 6 cut(s) 8, 414, 740, 751, 758, 775
CaiI CAGNNNCTG 1 cut(s) 783
CciI TCATGA 1 cut(s) 138
Cfr10I RCCGGY 2 cut(s) 756, 773
Cfr13I GGNCC 2 cut(s) 190, 737
Csp6I GTAC 1 cut(s) 963
CviAII CATG 7 cut(s) 47, 89, 139, 268, 529, 1120, 1153
CviQI GTAC 1 cut(s) 963
DdeI CTNAG 5 cut(s) 79, 147, 585, 658, 835
DpnI GATC 8 cut(s) 177, 234, 302, 389, 819, 876, 1028, 1124
DpnII GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 4 cut(s) 307, 690, 711, 1069
Eco24I GRGCYC 2 cut(s) 291, 364
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 270, 996
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 1091
EcoT14I CCWWGG 4 cut(s) 307, 690, 711, 1069
EcoT38I GRGCYC 2 cut(s) 291, 364
ErhI CCWWGG 4 cut(s) 307, 690, 711, 1069
FaeI CATG 7 cut(s) 50, 92, 142, 271, 532, 1123, 1156
FaqI GGGAC 1 cut(s) 176
FatI CATG 7 cut(s) 46, 88, 138, 267, 528, 1119, 1152
FauI CCCGC 2 cut(s) 387, 747
FauNDI CATATG 1 cut(s) 557
FbaI TGATCA 4 cut(s) 175, 817, 874, 1122
Fnu4HI GCNGC 6 cut(s) 423, 426, 681, 754, 778, 1075
FokI GGATG 2 cut(s) 369, 550
FriOI GRGCYC 2 cut(s) 291, 364
Fsp4HI GCNGC 6 cut(s) 423, 426, 681, 754, 778, 1075
FspBI CTAG 4 cut(s) 236, 647, 806, 1115
GluI GCNGC 6 cut(s) 423, 426, 681, 754, 778, 1075
HaeIII GGCC 5 cut(s) 45, 412, 738, 925, 946
HapII CCGG 3 cut(s) 35, 757, 774
Hin1II CATG 7 cut(s) 50, 92, 142, 271, 532, 1123, 1156
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 4 cut(s) 135, 264, 575, 794
HpaII CCGG 3 cut(s) 35, 757, 774
HphI GGTGA 6 cut(s) 329, 448, 584, 679, 700, 819
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 202, 250, 958, 1133
Hpy188III TCNNGA 8 cut(s) 139, 365, 464, 496, 587, 908, 1048, 1162
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 5 cut(s) 308, 461, 840, 971, 1168
HpyCH4III ACNGT 4 cut(s) 444, 628, 868, 915
HpyCH4V TGCA 4 cut(s) 404, 416, 425, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 5 cut(s) 79, 147, 585, 658, 835
Hsp92II CATG 7 cut(s) 50, 92, 142, 271, 532, 1123, 1156
KroI GCCGGC 2 cut(s) 756, 773
KroNI GCCGGC 2 cut(s) 758, 775
Ksp22I TGATCA 4 cut(s) 175, 817, 874, 1122
Kzo9I GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
LmnI GCTCC 2 cut(s) 286, 488
Lsp1109I GCAGC 5 cut(s) 409, 437, 692, 765, 789
LweI GCATC 2 cut(s) 425, 572
MaeI CTAG 4 cut(s) 236, 647, 806, 1115
MaeIII GTNAC 4 cut(s) 69, 100, 325, 572
MalI GATC 8 cut(s) 177, 234, 302, 389, 819, 876, 1028, 1124
MboI GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
MboII GAAGA 4 cut(s) 310, 397, 803, 998
MhlI GDGCHC 2 cut(s) 291, 364
MluCI AATT 8 cut(s) 51, 195, 471, 632, 884, 893, 1081, 1165
MlyI GAGTC 3 cut(s) 273, 569, 788
MmeI TCCRAC 2 cut(s) 261, 1173
MnlI CCTC 6 cut(s) 21, 214, 277, 427, 844, 936
MroNI GCCGGC 2 cut(s) 756, 773
MseI TTAA 2 cut(s) 123, 1001
MslI CAYNNNNRTG 3 cut(s) 107, 272, 483
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 3 cut(s) 35, 757, 774
MspR9I CCNGG 2 cut(s) 35, 1093
Mva1269I GAATGC 3 cut(s) 148, 662, 683
MvaI CCWGG 1 cut(s) 1093
MwoI GCNNNNNNNGC 1 cut(s) 422
NaeI GCCGGC 2 cut(s) 758, 775
NciI CCSGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 557
NdeII GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
NgoMIV GCCGGC 2 cut(s) 756, 773
NlaIII CATG 7 cut(s) 50, 92, 142, 271, 532, 1123, 1156
NlaIV GGNNCC 4 cut(s) 192, 522, 696, 717
NmuCI GTSAC 4 cut(s) 69, 100, 325, 572
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 138
PctI GAATGC 3 cut(s) 148, 662, 683
PdiI GCCGGC 2 cut(s) 758, 775
PfeI GAWTC 1 cut(s) 135
PflMI CCANNNNNTGG 2 cut(s) 607, 895
PkrI GCNGC 6 cut(s) 424, 427, 682, 755, 779, 1076
PleI GAGTC 3 cut(s) 272, 569, 788
PpsI GAGTC 3 cut(s) 272, 569, 788
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 1091
PspGI CCWGG 1 cut(s) 1091
PspN4I GGNNCC 4 cut(s) 192, 522, 696, 717
PspPI GGNCC 2 cut(s) 190, 737
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 783
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 964
RsaNI GTAC 1 cut(s) 963
RseI CAYNNNNRTG 3 cut(s) 107, 272, 483
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 123, 1001
SatI GCNGC 6 cut(s) 423, 426, 681, 754, 778, 1075
Sau3AI GATC 8 cut(s) 175, 232, 300, 387, 817, 874, 1026, 1122
Sau96I GGNCC 2 cut(s) 190, 737
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 3 cut(s) 273, 569, 788
ScrFI CCNGG 2 cut(s) 35, 1093
SduI GDGCHC 2 cut(s) 291, 364
SfaNI GCATC 2 cut(s) 425, 572
SfcI CTRYAG 2 cut(s) 423, 732
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 3 cut(s) 107, 272, 483
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 8 cut(s) 51, 195, 471, 632, 884, 893, 1081, 1165
SsiI CCGC 4 cut(s) 354, 394, 740, 1074
SspMI CTAG 4 cut(s) 236, 647, 806, 1115
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 33, 1091
StyI CCWWGG 4 cut(s) 307, 690, 711, 1069
TaaI ACNGT 4 cut(s) 444, 628, 868, 915
TaqI TCGA 1 cut(s) 666
TasI AATT 8 cut(s) 51, 195, 471, 632, 884, 893, 1081, 1165
TatI WGTACW 1 cut(s) 962
TauI GCSGC 1 cut(s) 1077
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 2 cut(s) 123, 1001
Tru9I TTAA 2 cut(s) 123, 1001
TscAI CASTG 1 cut(s) 1093
TseFI GTSAC 4 cut(s) 69, 100, 325, 572
TseI GCWGC 5 cut(s) 422, 425, 680, 753, 777
Tsp45I GTSAC 4 cut(s) 69, 100, 325, 572
TspDTI ATGAA 6 cut(s) 155, 171, 398, 544, 554, 999
TspRI CASTG 1 cut(s) 1093
Van91I CCANNNNNTGG 2 cut(s) 607, 895
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 2 cut(s) 1081, 1165
XceI RCATGY 1 cut(s) 532
XspI CTAG 4 cut(s) 236, 647, 806, 1115
ZrmI AGTACT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.