Rh2DG607200

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000438
Physical Location & Seq
Forward (+)
84109082 .. 84109768
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG607200.1

Sequence Viewer

Length: 687 bp
ATGCCCATCATGAAGACCGAAGACATGCCGTGGTTATGCTTTGATGGCTTAGCCACTCAGAAAATTATGTTTCAAGTCGGACAAAGAAACAACAAAGCTGCAGAACTGGCAGGCTGGGTTATTTGCAACTCAGCATTTGACCTCGAACCAGCAGCATTTGCCTTGGCACCCGAGATTTTACCAATAGGCCCTCTTTTGGCAAGCAGCCGGCTTGGAAAAACAGCAGGCAACTTCTGGCCAACGGATTCCACTTGCTTGGATTGGCTCGATCAACAACCTCCCTGCTCAGTCATCTATGTTGCATTTGGAAGCTTCACAGTTTTTTATCAAACCCAGTTCCAAGAATTGGCTTTAGGTCTTGAACTGTCCAATAGGCCATTCGTGTGGGTTGTGAGGCCAGACATCTCTGAAACTACTCCCTATCCAGAAGGATACCAAGAACGAGTAGGCTCTAAGGGAATGATGGTGGGATGGGCACCCCAACAGAAGGTTCTATCCCATCCTTCAATTTCTTGCTTCCTAAGTCACTGTGGTTGGAACTCTACCATGGAAGGTGTAGGCAATGGGCTTCCTTTCTTGTGCTTGCCATATTTTGCTGACCAGCTCTTTAACGAGGGCTACATTTGCGATGTTTGGGAGGTGGGATTGAGGTTTGTGATAGGAGCAGAAAATGCGACGAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

228

Amino Acids

25.31

Weight (kDa)

4.54

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 97 - 212 1.1e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 166, 475
AccB7I CCANNNNNTGG 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 679
AfiI CCNNNNNNNGG 3 cut(s) 196, 346, 487
AgsI TTSAA 3 cut(s) 74, 362, 507
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 394, 474, 506
AluBI AGCT 3 cut(s) 98, 312, 604
AluI AGCT 3 cut(s) 98, 312, 604
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 4 cut(s) 187, 236, 374, 395
ApeKI GCWGC 3 cut(s) 98, 152, 204
ApoI RAATTY 1 cut(s) 679
AspS9I GGNCC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 478
BalI TGGCCA 1 cut(s) 238
BanI GGYRCC 2 cut(s) 166, 475
BbsI GAAGAC 2 cut(s) 20, 27
BbvI GCAGC 3 cut(s) 85, 164, 216
BccI CCATC 5 cut(s) 14, 38, 457, 465, 507
BceAI ACGGC 1 cut(s) 13
BciVI GTATCC 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 3 cut(s) 99, 153, 205
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 3 cut(s) 100, 154, 206
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 168, 477
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 20, 27
Bpu1102I GCTNAGC 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 29, 162, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 346, 487
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 111, 334
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 3 cut(s) 29, 162, 546
BseGI GGATG 2 cut(s) 476, 499
BseLI CCNNNNNNNGG 3 cut(s) 196, 346, 487
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 3 cut(s) 71, 144, 300
BseNI ACTGG 2 cut(s) 111, 334
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 3 cut(s) 85, 164, 216
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 4 cut(s) 189, 238, 376, 397
BshNI GGYRCC 2 cut(s) 166, 475
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 3 cut(s) 196, 346, 487
BsnI GGCC 4 cut(s) 189, 238, 376, 397
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 1 cut(s) 268
Bsp1720I GCTNAGC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 4 cut(s) 189, 238, 376, 397
BspCNI CTCAG 3 cut(s) 70, 143, 299
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 168, 477
BspMAI CTGCAG 1 cut(s) 103
BspT107I GGYRCC 2 cut(s) 166, 475
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 2 cut(s) 111, 334
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 3 cut(s) 29, 162, 546
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 162, 546
Bst4CI ACNGT 3 cut(s) 319, 366, 530
BstAPI GCANNNNNTGC 2 cut(s) 158, 671
BstC8I GCNNGC 5 cut(s) 112, 202, 209, 226, 584
BstDEI CTNAG 6 cut(s) 49, 57, 130, 286, 453, 521
BstDSI CCRYGG 2 cut(s) 29, 546
BstF5I GGATG 2 cut(s) 476, 499
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 5 cut(s) 45, 107, 158, 624, 671
BstNSI RCATGY 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 85, 164, 216
BstV2I GAAGAC 2 cut(s) 20, 27
BstXI CCANNNNNNTGG 2 cut(s) 256, 384
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 189, 238, 376, 397
BtgI CCRYGG 2 cut(s) 29, 546
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 476, 499
BtsIMutI CAGTG 1 cut(s) 526
Cac8I GCNNGC 5 cut(s) 112, 202, 209, 226, 584
CciI TCATGA 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 3 cut(s) 10, 25, 547
DdeI CTNAG 6 cut(s) 49, 57, 130, 286, 453, 521
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 162, 546
Eco88I CYCGRG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 188
EcoT14I CCWWGG 2 cut(s) 162, 546
ErhI CCWWGG 2 cut(s) 162, 546
FaeI CATG 3 cut(s) 13, 28, 550
FaiI YATR 8 cut(s) 11, 26, 37, 68, 297, 548, 589, 685
FatI CATG 3 cut(s) 9, 24, 546
Fnu4HI GCNGC 3 cut(s) 99, 153, 205
FokI GGATG 2 cut(s) 483, 486
Fsp4HI GCNGC 3 cut(s) 99, 153, 205
GluI GCNGC 3 cut(s) 99, 153, 205
GsaI CCCAGC 1 cut(s) 118
HaeIII GGCC 4 cut(s) 189, 238, 376, 397
HapII CCGG 1 cut(s) 208
Hin1II CATG 3 cut(s) 13, 28, 550
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 60, 80, 409
Hpy188III TCNNGA 3 cut(s) 10, 359, 425
Hpy99I CGWCG 1 cut(s) 679
HpyAV CCTTC 4 cut(s) 422, 481, 513, 545
HpyCH4III ACNGT 3 cut(s) 319, 366, 530
HpyCH4V TGCA 3 cut(s) 101, 126, 302
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 107, 158, 624, 671
HpyF3I CTNAG 6 cut(s) 49, 57, 130, 286, 453, 521
Hsp92II CATG 3 cut(s) 13, 28, 550
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 3 cut(s) 85, 164, 216
MaeIII GTNAC 1 cut(s) 524
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 25, 32
MhlI GDGCHC 1 cut(s) 478
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 4 cut(s) 63, 344, 507, 679
MluNI TGGCCA 1 cut(s) 238
MmeI TCCRAC 2 cut(s) 58, 515
MnlI CCTC 7 cut(s) 152, 201, 288, 387, 607, 631, 642
Mox20I TGGCCA 1 cut(s) 238
MroNI GCCGGC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 238
MseI TTAA 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 238
MspI CCGG 1 cut(s) 208
MwoI GCNNNNNNNGC 5 cut(s) 45, 107, 158, 624, 671
NaeI GCCGGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 546
NdeII GATC 1 cut(s) 268
NgoMIV GCCGGC 1 cut(s) 207
NlaIII CATG 3 cut(s) 13, 28, 550
NlaIV GGNNCC 2 cut(s) 168, 477
NmuCI GTSAC 1 cut(s) 524
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 9
PdiI GCCGGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 3 cut(s) 100, 154, 206
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 168, 477
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 3 cut(s) 99, 153, 205
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 382
Sse9I AATT 4 cut(s) 63, 344, 507, 679
StyI CCWWGG 2 cut(s) 162, 546
TaaI ACNGT 3 cut(s) 319, 366, 530
TaqI TCGA 2 cut(s) 144, 267
TaqII GACCGA 1 cut(s) 32
TasI AATT 4 cut(s) 63, 344, 507, 679
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 1 cut(s) 533
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 3 cut(s) 98, 152, 204
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 346
XapI RAATTY 1 cut(s) 679
XceI RCATGY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.