MD17G1058300.v1.1

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000438
Physical Location & Seq
Reverse (-)
4753872 .. 4754273
402 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1058300.v1.1.491

Sequence Viewer

Length: 402 bp
ATGAAGAGGCTGCTCCCAAGTCTCGAACCCGAGACCTACCGCTCATGGGCGAAGGCACTTGCCATCGCACCAAGTGCGACCTCTTTTATGGTTAGAAACAACCAATCAACAAAATTAGCAGACTGGTTAATTTGCATCTCAACCTACGACCTTGAGCAGGCGGCATTTGCCATTTCTCCTCAGATTCTACCAATAGGTCCACTTTTGGCAAGCAACCGACTCGAAAACTCTGCCAGAAACATCTCGCCGGATGACTCATGTTTGAATTGGCTTGACCAACAATCTCCACAATCAGTCATATTTGTTGCTTTTGGTAGTAATGCAGTTTTTTTTATCGAAAACAGTTCGAAGAATTGTGCCAGGGGCTTGAACTCTCCGATAGGCCTTTTCTGTGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

134

Amino Acids

14.64

Weight (kDa)

6.17

Isoelectric Point (pI)

69.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 2 cut(s) 40, 161
AdeI CACNNNGTG 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 46, 157
AgsI TTSAA 2 cut(s) 265, 370
AjnI CCWGG 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 26, 26
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 197
BccI CCATC 1 cut(s) 71
BcgI CGANNNNNNTGC 4 cut(s) 202, 212, 236, 246
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 26, 26
BisI GCNGC 2 cut(s) 11, 162
BlsI GCNGC 2 cut(s) 12, 163
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 157
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 46, 157
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 46, 157
BsmAI GTCTC 2 cut(s) 26, 26
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 347
BspACI CCGC 2 cut(s) 40, 161
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 159, 211
BstDEI CTNAG 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 256
BstMAI GTCTC 2 cut(s) 26, 26
BstMWI GCNNNNNNNGC 2 cut(s) 74, 167
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BsuRI GGCC 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 159, 211
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 2 cut(s) 45, 258
CviJI RGCY 4 cut(s) 10, 271, 366, 384
CviKI_1 RGCY 4 cut(s) 10, 271, 366, 384
DdeI CTNAG 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 48, 261
FaiI YATR 4 cut(s) 46, 89, 259, 299
FatI CATG 2 cut(s) 44, 257
Fnu4HI GCNGC 2 cut(s) 11, 162
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 11, 162
GluI GCNGC 2 cut(s) 11, 162
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 248
Hin1II CATG 2 cut(s) 48, 261
HinfI GANTC 3 cut(s) 184, 219, 254
HpaII CCGG 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 183, 378
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 2 cut(s) 135, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 167
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 48, 261
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 6 cut(s) 109, 143, 247, 261, 346, 373
LweI GCATC 1 cut(s) 144
MbiI CCGCTC 1 cut(s) 42
MboII GAAGA 2 cut(s) 16, 361
MluCI AATT 4 cut(s) 113, 129, 265, 352
MlyI GAGTC 2 cut(s) 213, 248
MnlI CCTC 2 cut(s) 91, 189
MseI TTAA 1 cut(s) 128
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 74, 167
NlaIII CATG 2 cut(s) 48, 261
NspV TTCGAA 1 cut(s) 347
PceI AGGCCT 1 cut(s) 384
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 12, 163
PleI GAGTC 2 cut(s) 213, 248
PpsI GAGTC 2 cut(s) 213, 248
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspPI GGNCC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 11, 162
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 213, 248
ScrFI CCNGG 1 cut(s) 361
SetI ASST 5 cut(s) 38, 83, 146, 153, 199
SfaNI GCATC 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 347
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 4 cut(s) 113, 129, 265, 352
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 2 cut(s) 40, 161
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 4 cut(s) 24, 222, 336, 347
TasI AATT 4 cut(s) 113, 129, 265, 352
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.