RchiOBHm_Chr2g0166001

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000438
Physical Location & Seq
Forward (+)
80828172 .. 80828708
537 bp
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UTR
Exon/CDS
Intron
PRQ53392

Sequence Viewer

Length: 537 bp
ATGAGCAAGCCACATATTTTAGTTATTCCTTACCCAGCACAAGGCCATGTAATTCCCTTGATGGAGTTATCACAGTGCTTAATAAATCATGGCTTCAAAGTCACATTCGTGAATACGGATCATACTCATGAGCGAGTCATGAATGCCGTGGCTGATGAAACTCATAGAGGGGATGATCAGCTTCATCTGGTTTCAATTCCAGATGGGTTAGAACCATGGGAGGATAGGAATGAGCTGGGTCAGTTATGTGAAGCAATATACCGAGTGATGCCTGGGAAGTTGGAGGAGCTCATAGAGAAGATTAATGGAGGAGAAGGTGACAAAATAACTTGTGTCATTGCTGATTTCAGTATCGGGTGGGCTCTGGAAGTGGCAGGGAAAATGAATATCAAAAGTGTTGCCTTTTTTCCTGCAGCAGCTGCAGTTTTGGCTTTGAATTTTTCTATTCCACAGTTAATACAAGAAGGAATCATTAATAGTGATGGTAAGTTATTCCTCTATACAACAGGGCAAACACCGAACAAATGCACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

178

Amino Acids

19.61

Weight (kDa)

5.14

Isoelectric Point (pI)

24.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 97, 195, 436
AjnI CCWGG 1 cut(s) 271
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 4 cut(s) 181, 235, 289, 419
AluI AGCT 4 cut(s) 181, 235, 289, 419
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 3 cut(s) 413, 416, 419
ApoI RAATTY 1 cut(s) 436
AseI ATTAAT 2 cut(s) 303, 474
AsuHPI GGTGA 1 cut(s) 329
BanII GRGCYC 2 cut(s) 291, 364
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 406, 425, 428
BccI CCATC 3 cut(s) 55, 197, 476
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 175
BfmI CTRYAG 2 cut(s) 411, 420
BisI GCNGC 3 cut(s) 414, 417, 420
BlsI GCNGC 3 cut(s) 415, 418, 421
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 147, 215, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 147, 215, 272
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 336
BseRI GAGGAG 2 cut(s) 299, 324
BseXI GCAGC 3 cut(s) 406, 425, 428
BseYI CCCAGC 2 cut(s) 34, 235
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 41
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 291, 364
Bsp143I GATC 2 cut(s) 118, 175
Bsp19I CCATGG 1 cut(s) 215
BspANI GGCC 1 cut(s) 45
BspHI TCATGA 2 cut(s) 127, 138
BspMAI CTGCAG 2 cut(s) 415, 424
BspPI GGATC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 147, 215, 272
BssMI GATC 2 cut(s) 118, 175
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 75, 453
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 8
BstDSI CCRYGG 2 cut(s) 147, 215
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 121, 178
BstMBI GATC 2 cut(s) 118, 175
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 2 cut(s) 411, 420
BstV1I GCAGC 3 cut(s) 406, 425, 428
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 147, 215
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 419
CciI TCATGA 2 cut(s) 127, 138
CviAII CATG 5 cut(s) 47, 89, 128, 139, 216
DpnI GATC 2 cut(s) 120, 177
DpnII GATC 2 cut(s) 118, 175
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 291, 364
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 2 cut(s) 291, 364
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 5 cut(s) 50, 92, 131, 142, 219
FatI CATG 5 cut(s) 46, 88, 127, 138, 215
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 414, 417, 420
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 2 cut(s) 291, 364
Fsp4HI GCNGC 3 cut(s) 414, 417, 420
GluI GCNGC 3 cut(s) 414, 417, 420
GsaI CCCAGC 2 cut(s) 38, 239
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 5 cut(s) 50, 92, 131, 142, 219
HinfI GANTC 2 cut(s) 135, 468
HphI GGTGA 1 cut(s) 329
Hpy188III TCNNGA 5 cut(s) 109, 128, 139, 200, 365
HpyAV CCTTC 2 cut(s) 308, 458
HpyCH4III ACNGT 2 cut(s) 75, 453
HpyCH4V TGCA 3 cut(s) 413, 422, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
Hsp92II CATG 5 cut(s) 50, 92, 131, 142, 219
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 118, 175
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 3 cut(s) 406, 425, 428
LweI GCATC 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 100, 317
MalI GATC 2 cut(s) 120, 177
MboI GATC 2 cut(s) 118, 175
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 291, 364
MluCI AATT 4 cut(s) 51, 195, 436, 532
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 5 cut(s) 161, 214, 277, 302, 506
MseI TTAA 5 cut(s) 80, 303, 455, 474, 535
MslI CAYNNNNRTG 2 cut(s) 107, 126
MspA1I CMGCKG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NcoI CCATGG 1 cut(s) 215
NdeII GATC 2 cut(s) 118, 175
NlaIII CATG 5 cut(s) 50, 92, 131, 142, 219
NmuCI GTSAC 2 cut(s) 100, 317
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 2 cut(s) 127, 138
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 3 cut(s) 415, 418, 421
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PshBI ATTAAT 2 cut(s) 303, 474
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 271
PspFI CCCAGC 2 cut(s) 34, 235
PspGI CCWGG 1 cut(s) 271
PstI CTGCAG 2 cut(s) 415, 424
PstNI CAGNNNCTG 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 419
RseI CAYNNNNRTG 2 cut(s) 107, 126
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 5 cut(s) 80, 303, 455, 474, 535
SatI GCNGC 3 cut(s) 414, 417, 420
Sau3AI GATC 2 cut(s) 118, 175
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 2 cut(s) 291, 364
SetI ASST 5 cut(s) 183, 237, 291, 319, 421
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 2 cut(s) 411, 420
SmiMI CAYNNNNRTG 2 cut(s) 107, 126
Sse9I AATT 4 cut(s) 51, 195, 436, 532
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 75, 453
TasI AATT 4 cut(s) 51, 195, 436, 532
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 5 cut(s) 80, 303, 455, 474, 535
Tru9I TTAA 5 cut(s) 80, 303, 455, 474, 535
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 2 cut(s) 100, 317
TseI GCWGC 3 cut(s) 413, 416, 419
Tsp45I GTSAC 2 cut(s) 100, 317
TspDTI ATGAA 4 cut(s) 155, 171, 173, 398
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 80
VspI ATTAAT 2 cut(s) 303, 474
XapI RAATTY 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.