Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000076.1

Orthogroup ID

OG0000438

Physical Location & Seq

Genomic Coordinates Reverse (-)

68293 .. 68850

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000076.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgagcaagccacatattatagccattccttacccagctcaaggccatgtaattcccttgatggagttatcacaatgcttagtgaatgaaggcatcaaagtcacatttgtgaacacagattttaaccacaagcgagtcatgaattccttggttgttgaaactcatgaaagggatgatcaggttcgtctggtttcaattccggatgggttagaaccaggggaggacagaaatgagctagggcagctatgtgaagcaatacttagagtcatgcctgggaagttagaggagctcatagagaagatcaaggaagaagaaggtgataaagttgcttgtatcattgctgatgagaataacggatgggctctggaagtagcagagaaaatgcaaataaagaaagttgccttctggtctgcgtcagctgcacttttggcactggagttttgtatcccaaaattaattcaagaaggaatcattgatgatgatggtgagttattcgtctgtgacgtacttgtcagtattatatgcaacactgtggaatattttagtcatgtgccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

185

Amino Acids

20.67

Weight (kDa)

4.6

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02100
fragaria_vesca	FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica	MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica	Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis	pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis	RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata	RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora	Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii	Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa	Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha	Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana	Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
AccIII	TCCGGA	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	158, 195, 461
AjnI	CCWGG	2 cut(s)	214, 271
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	5 cut(s)	38, 235, 244, 289, 419
AluI	AGCT	5 cut(s)	38, 235, 244, 289, 419
Alw21I	GWGCWC	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	241, 419
ApoI	RAATTY	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	329, 497
BanII	GRGCYC	2 cut(s)	291, 364
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	253, 406
BccI	CCATC	4 cut(s)	55, 197, 351, 476
BciT130I	CCWGG	2 cut(s)	216, 273
BciVI	GTATCC	1 cut(s)	455
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	455
BisI	GCNGC	2 cut(s)	242, 420
BlsI	GCNGC	2 cut(s)	243, 421
Bme1390I	CCNGG	2 cut(s)	216, 273
BmrFI	CCNGG	2 cut(s)	216, 273
BmsI	GCATC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	147, 215, 272
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	216, 273
BseDI	CCNNGG	3 cut(s)	147, 215, 272
BseGI	GGATG	3 cut(s)	178, 208, 362
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	253, 406
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	291, 364
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	175, 300
BspANI	GGCC	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	2 cut(s)	138, 163
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	3 cut(s)	147, 215, 272
BssMI	GATC	2 cut(s)	175, 300
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	216, 273
Bst4CI	ACNGT	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	79, 260
BstF5I	GGATG	3 cut(s)	178, 208, 362
BstKTI	GATC	2 cut(s)	178, 303
BstMBI	GATC	2 cut(s)	175, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 419, 428
BstNI	CCWGG	2 cut(s)	216, 273
BstSCI	CCNGG	2 cut(s)	214, 271
BstV1I	GCAGC	2 cut(s)	253, 406
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	178, 208, 362
BtsIMutI	CAGTG	2 cut(s)	431, 528
Cac8I	GCNNGC	1 cut(s)	8
CciI	TCATGA	2 cut(s)	138, 163
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	5 cut(s)	47, 139, 164, 268, 548
CviJI	RGCY	9 cut(s)	10, 23, 38, 45, 235, 244, 289, 362, 419
CviKI_1	RGCY	9 cut(s)	10, 23, 38, 45, 235, 244, 289, 362, 419
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	2 cut(s)	79, 260
DpnI	GATC	2 cut(s)	177, 302
DpnII	GATC	2 cut(s)	175, 300
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	291, 364
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	214, 271
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	291, 364
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	5 cut(s)	50, 142, 167, 271, 551
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	5 cut(s)	46, 138, 163, 267, 547
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	242, 420
FokI	GGATG	3 cut(s)	185, 215, 369
FriOI	GRGCYC	2 cut(s)	291, 364
Fsp4HI	GCNGC	2 cut(s)	242, 420
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	2 cut(s)	242, 420
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	50, 142, 167, 271, 551
HinfI	GANTC	3 cut(s)	135, 264, 468
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	329, 497
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	5 cut(s)	139, 164, 200, 365, 461
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	4 cut(s)	83, 308, 412, 458
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	385, 422, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 419, 428
HpyF3I	CTNAG	2 cut(s)	79, 260
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	5 cut(s)	50, 142, 167, 271, 551
Kpn2I	TCCGGA	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	175, 300
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	2 cut(s)	253, 406
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	100, 500
MalI	GATC	2 cut(s)	177, 302
MboI	GATC	2 cut(s)	175, 300
MboII	GAAGA	3 cut(s)	310, 320, 323
MhlI	GDGCHC	2 cut(s)	291, 364
MluCI	AATT	5 cut(s)	51, 142, 195, 452, 456
MlyI	GAGTC	2 cut(s)	144, 273
MnlI	CCTC	2 cut(s)	214, 277
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	123, 455
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	216, 273
MvaI	CCWGG	2 cut(s)	216, 273
MwoI	GCNNNNNNNGC	3 cut(s)	241, 419, 428
NdeII	GATC	2 cut(s)	175, 300
NlaIII	CATG	5 cut(s)	50, 142, 167, 271, 551
NmuCI	GTSAC	2 cut(s)	100, 500
OliI	CACNNNNGTG	1 cut(s)	107
PagI	TCATGA	2 cut(s)	138, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	243, 421
PleI	GAGTC	2 cut(s)	143, 272
PpsI	GAGTC	2 cut(s)	143, 272
PshBI	ATTAAT	1 cut(s)	455
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	214, 271
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	214, 271
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	123, 455
SatI	GCNGC	2 cut(s)	242, 420
Sau3AI	GATC	2 cut(s)	175, 300
SchI	GAGTC	2 cut(s)	144, 273
ScrFI	CCNGG	2 cut(s)	216, 273
SduI	GDGCHC	2 cut(s)	291, 364
SetI	ASST	8 cut(s)	40, 183, 237, 246, 291, 319, 421, 507
SfaNI	GCATC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	5 cut(s)	51, 142, 195, 452, 456
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	214, 271
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	507
TasI	AATT	5 cut(s)	51, 142, 195, 452, 456
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	2 cut(s)	123, 455
Tru9I	TTAA	2 cut(s)	123, 455
TscAI	CASTG	2 cut(s)	438, 535
TseFI	GTSAC	2 cut(s)	100, 500
TseI	GCWGC	2 cut(s)	241, 419
Tsp45I	GTSAC	2 cut(s)	100, 500
TspDTI	ATGAA	3 cut(s)	102, 155, 180
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	438, 535
VspI	ATTAAT	1 cut(s)	455
XapI	RAATTY	1 cut(s)	142
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.