Rh2AG585400

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000438
Physical Location & Seq
Forward (+)
81818984 .. 81820296
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG585400.1

Sequence Viewer

Length: 642 bp
ATGAATTCCTTGGCAGCTGAAACTCATAAAAGGGATGATCAGATTCGTCTGGTTTCAATTCCGGATGGGTTAGAACCATGGGAGGACAGAAATGAGTTAGGGCAGCTATGTGAAGCAATACTTAGAGTCATGCCTGGGAAGTTGGAGGAGCTCATAGAGAAGATCAAGGAAGAAGAAGGTGATAAAGTTGCCTGTATCATTGCTGATGAGAGTAACGGATGGGCTCTGGAAGTAGCAGAGAAAATGCAAATAAAGAAAGTTGCCTTCTGGCCTGCGTCAGCTGCACTTTTGGCACTGGAGTTTTGTATCCCAAAATTAATTCAAGAAGGAATCATTGATGATAATGGATCCGCATTAAAAAGCCAGATGATCAACTTAGCACCAAACATGCCCACCATGAAAACTGAAGAGTTGACTTGGTTAACCATTGGTGACATAACCACTCAGAAAATTGTATTCCAAGTTATGCTAAGTAGCAACAAGACTGTAAAATTGGCTGACTGGGTTGTATGCAACTCAGCATTCGATCTAGAACCAGGAGCATTCACCTTGGCACCACAGATTTTACCAATAGGCCCGCTTTTGGCAAGCAATCACCTCGACAATTCAGCAGGAAACTTCTGGCCACCAGACTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

213

Amino Acids

23.5

Weight (kDa)

4.52

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 553
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 2 cut(s) 351, 578
AclWI GGATC 2 cut(s) 342, 355
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 2 cut(s) 57, 323
AjnI CCWGG 2 cut(s) 133, 535
AluBI AGCT 4 cut(s) 17, 106, 151, 281
AluI AGCT 4 cut(s) 17, 106, 151, 281
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 2 cut(s) 342, 355
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 3 cut(s) 269, 574, 623
ApeKI GCWGC 3 cut(s) 14, 103, 281
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 191, 443, 538, 587
BalI TGGCCA 1 cut(s) 625
BamHI GGATCC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 553
BanII GRGCYC 2 cut(s) 153, 226
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 26, 115, 268
BccI CCATC 2 cut(s) 59, 213
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BciT130I CCWGG 2 cut(s) 135, 537
BciVI GTATCC 1 cut(s) 317
BclI TGATCA 2 cut(s) 37, 369
BfaI CTAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 3 cut(s) 15, 104, 282
BlsI GCNGC 3 cut(s) 16, 105, 283
Bme1390I CCNGG 2 cut(s) 135, 537
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 349, 555
BmrFI CCNGG 2 cut(s) 135, 537
BmrI ACTGGG 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 511
BpmI CTGGAG 1 cut(s) 317
BsaJI CCNNGG 4 cut(s) 9, 77, 134, 549
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse1I ACTGG 2 cut(s) 300, 506
Bse3DI GCAATG 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 2 cut(s) 135, 537
BseDI CCNNGG 4 cut(s) 9, 77, 134, 549
BseGI GGATG 3 cut(s) 40, 70, 224
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 458, 531
BseNI ACTGG 2 cut(s) 300, 506
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 26, 115, 268
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 3 cut(s) 271, 576, 625
BshNI GGYRCC 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 583
BsmI GAATGC 2 cut(s) 521, 542
BsnI GGCC 3 cut(s) 271, 576, 625
Bsp1286I GDGCHC 2 cut(s) 153, 226
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 5 cut(s) 37, 162, 347, 369, 526
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 2 cut(s) 351, 578
BspANI GGCC 3 cut(s) 271, 576, 625
BspCNI CTCAG 2 cut(s) 457, 530
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 349, 555
BspPI GGATC 2 cut(s) 342, 355
BspT107I GGYRCC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 2 cut(s) 300, 506
BssECI CCNNGG 4 cut(s) 9, 77, 134, 549
BssMI GATC 5 cut(s) 37, 162, 347, 369, 526
BssT1I CCWWGG 3 cut(s) 9, 77, 549
Bst2UI CCWGG 2 cut(s) 135, 537
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 273, 578, 589
BstDEI CTNAG 5 cut(s) 122, 376, 444, 470, 517
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 3 cut(s) 40, 70, 224
BstKTI GATC 5 cut(s) 40, 165, 350, 372, 529
BstMBI GATC 5 cut(s) 37, 162, 347, 369, 526
BstMWI GCNNNNNNNGC 2 cut(s) 281, 290
BstNI CCWGG 2 cut(s) 135, 537
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 133, 535
BstV1I GCAGC 3 cut(s) 26, 115, 268
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 3 cut(s) 271, 576, 625
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 3 cut(s) 40, 70, 224
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 273, 578, 589
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 1 cut(s) 264
CviAII CATG 4 cut(s) 78, 130, 388, 397
DdeI CTNAG 5 cut(s) 122, 376, 444, 470, 517
DpnI GATC 5 cut(s) 39, 164, 349, 371, 528
DpnII GATC 5 cut(s) 37, 162, 347, 369, 526
EaeI YGGCCR 1 cut(s) 623
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 3 cut(s) 9, 77, 549
Eco24I GRGCYC 2 cut(s) 153, 226
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 133, 535
EcoT14I CCWWGG 3 cut(s) 9, 77, 549
EcoT38I GRGCYC 2 cut(s) 153, 226
ErhI CCWWGG 3 cut(s) 9, 77, 549
FaeI CATG 4 cut(s) 81, 133, 391, 400
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 77, 129, 387, 396
FauI CCCGC 1 cut(s) 585
FbaI TGATCA 2 cut(s) 37, 369
Fnu4HI GCNGC 3 cut(s) 15, 104, 282
FokI GGATG 3 cut(s) 47, 77, 231
FriOI GRGCYC 2 cut(s) 153, 226
Fsp4HI GCNGC 3 cut(s) 15, 104, 282
FspBI CTAG 1 cut(s) 530
GluI GCNGC 3 cut(s) 15, 104, 282
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 3 cut(s) 271, 576, 625
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 264
Hin1II CATG 4 cut(s) 81, 133, 391, 400
HincII GTYRAC 2 cut(s) 414, 423
HindII GTYRAC 2 cut(s) 414, 423
HinfI GANTC 4 cut(s) 43, 126, 330, 632
HpaI GTTAAC 1 cut(s) 423
HpaII CCGG 1 cut(s) 62
HphI GGTGA 4 cut(s) 191, 443, 538, 587
Hpy166II GTNNAC 2 cut(s) 414, 423
Hpy188I TCNGA 2 cut(s) 42, 447
Hpy188III TCNNGA 4 cut(s) 62, 227, 323, 530
Hpy8I GTNNAC 2 cut(s) 414, 423
HpyAV CCTTC 3 cut(s) 170, 274, 320
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 247, 284, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 290
HpyF3I CTNAG 5 cut(s) 122, 376, 444, 470, 517
Hsp92II CATG 4 cut(s) 81, 133, 391, 400
Kpn2I TCCGGA 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 37, 369
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 5 cut(s) 37, 162, 347, 369, 526
LmnI GCTCC 2 cut(s) 148, 539
Lsp1109I GCAGC 3 cut(s) 26, 115, 268
MaeI CTAG 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 212, 431
MalI GATC 5 cut(s) 39, 164, 349, 371, 528
MboI GATC 5 cut(s) 37, 162, 347, 369, 526
MboII GAAGA 4 cut(s) 172, 182, 185, 419
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 153, 226
MlsI TGGCCA 1 cut(s) 625
MluCI AATT 7 cut(s) 4, 57, 314, 318, 450, 491, 604
MluNI TGGCCA 1 cut(s) 625
MlyI GAGTC 2 cut(s) 135, 626
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 76, 139, 608
Mox20I TGGCCA 1 cut(s) 625
MroI TCCGGA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 625
MseI TTAA 3 cut(s) 317, 356, 422
Msp20I TGGCCA 1 cut(s) 625
MspA1I CMGCKG 2 cut(s) 17, 281
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 135, 537
Mva1269I GAATGC 2 cut(s) 521, 542
MvaI CCWGG 2 cut(s) 135, 537
MwoI GCNNNNNNNGC 2 cut(s) 281, 290
NcoI CCATGG 1 cut(s) 77
NdeII GATC 5 cut(s) 37, 162, 347, 369, 526
NlaIII CATG 4 cut(s) 81, 133, 391, 400
NlaIV GGNNCC 2 cut(s) 349, 555
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 391
PctI GAATGC 2 cut(s) 521, 542
PfeI GAWTC 2 cut(s) 43, 330
PkrI GCNGC 3 cut(s) 16, 105, 283
PleI GAGTC 2 cut(s) 134, 626
PpsI GAGTC 2 cut(s) 134, 626
PshBI ATTAAT 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 133, 535
PspGI CCWGG 2 cut(s) 133, 535
PspN4I GGNNCC 2 cut(s) 349, 555
PspPI GGNCC 1 cut(s) 575
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 2 cut(s) 17, 281
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 317, 356, 422
SatI GCNGC 3 cut(s) 15, 104, 282
Sau3AI GATC 5 cut(s) 37, 162, 347, 369, 526
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 135, 626
ScrFI CCNGG 2 cut(s) 135, 537
SduI GDGCHC 2 cut(s) 153, 226
SetI ASST 7 cut(s) 19, 108, 153, 181, 283, 551, 600
Sse9I AATT 7 cut(s) 4, 57, 314, 318, 450, 491, 604
SsiI CCGC 2 cut(s) 351, 578
SspMI CTAG 1 cut(s) 530
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 133, 535
StyI CCWWGG 3 cut(s) 9, 77, 549
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 2 cut(s) 525, 600
TasI AATT 7 cut(s) 4, 57, 314, 318, 450, 491, 604
TfiI GAWTC 2 cut(s) 43, 330
Tru1I TTAA 3 cut(s) 317, 356, 422
Tru9I TTAA 3 cut(s) 317, 356, 422
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 3 cut(s) 14, 103, 281
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 17, 413
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 300
VspI ATTAAT 1 cut(s) 317
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 391
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.