Rh2AG585200

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000438
Physical Location & Seq
Forward (+)
81811529 .. 81812365
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG585200.1

Sequence Viewer

Length: 438 bp
ATGCCTGCCATGAACACGCAGGAGTTTGCGTGGGCATGCCTCGGACACAAGGCTATGCAGAAAAATGTGTTTGAGCTTATGCTCAGAAACAACAAATCAAGGAAATCAGCAGAGTGGTTACTTTGCAACTCATCCTATGACCTTGAGCCTGCAGCATTTACCATGACTCCACACATTCTACCAATAGGTCCACTTTTGGCAAGCAATCGGCTCAAACTAGACTTTGCAGGAGAAGACTCTTGCTTGACTTGGCTTGATCAACAAGCAACACAGTCTGTAGTAGAAATCAAAAATAAGGTGGAGCAGCTGCTAGGAAATGGGGAAATAAAAGCAAGGGCTTTGGATATCAAGAAACTGGTTATGGATGGCATCAAAGAAGGTGGCGGCTCAAACAAGAATTTCAAGGATTTTGTTGAATGGATAAAGGGATTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

7.69

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 397
AgsI TTSAA 2 cut(s) 403, 416
AluBI AGCT 2 cut(s) 76, 307
AluI AGCT 2 cut(s) 76, 307
ApeKI GCWGC 3 cut(s) 152, 304, 307
ApoI RAATTY 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 164, 294, 316
BccI CCATC 1 cut(s) 359
BclI TGATCA 1 cut(s) 256
BfaI CTAG 2 cut(s) 218, 311
BfmI CTRYAG 2 cut(s) 150, 276
BisI GCNGC 4 cut(s) 153, 305, 308, 385
BlsI GCNGC 4 cut(s) 154, 306, 309, 386
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 40
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 151, 181
Bse1I ACTGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 131, 370
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 3 cut(s) 164, 294, 316
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 154
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 273
BstC8I GCNNGC 4 cut(s) 6, 37, 150, 202
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 131, 370
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 39
BstSFI CTRYAG 2 cut(s) 150, 276
BstV1I GCAGC 3 cut(s) 164, 294, 316
BstV2I GAAGAC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 131, 370
Cac8I GCNNGC 4 cut(s) 6, 37, 150, 202
Cfr13I GGNCC 1 cut(s) 188
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 3 cut(s) 10, 36, 163
CviJI RGCY 8 cut(s) 53, 76, 148, 211, 253, 307, 338, 387
CviKI_1 RGCY 8 cut(s) 53, 76, 148, 211, 253, 307, 338, 387
DdeI CTNAG 1 cut(s) 83
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 188
EcoRV GATATC 1 cut(s) 346
FaeI CATG 3 cut(s) 13, 39, 166
FaiI YATR 8 cut(s) 11, 37, 56, 80, 138, 164, 362, 436
FatI CATG 3 cut(s) 9, 35, 162
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 153, 305, 308, 385
FokI GGATG 2 cut(s) 118, 377
Fsp4HI GCNGC 4 cut(s) 153, 305, 308, 385
FspBI CTAG 2 cut(s) 218, 311
GluI GCNGC 4 cut(s) 153, 305, 308, 385
Hin1II CATG 3 cut(s) 13, 39, 166
HinfI GANTC 2 cut(s) 166, 236
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 44, 86
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 58, 126, 152, 227
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 3 cut(s) 13, 39, 166
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 5 cut(s) 5, 18, 162, 213, 341
Lsp1109I GCAGC 3 cut(s) 164, 294, 316
LweI GCATC 1 cut(s) 378
MaeI CTAG 2 cut(s) 218, 311
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 245
MluCI AATT 1 cut(s) 397
MlyI GAGTC 2 cut(s) 160, 230
MnlI CCTC 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 307
NdeII GATC 1 cut(s) 256
NlaIII CATG 3 cut(s) 13, 39, 166
NspI RCATGY 1 cut(s) 39
PaeI GCATGC 1 cut(s) 39
PkrI GCNGC 4 cut(s) 154, 306, 309, 386
PleI GAGTC 2 cut(s) 160, 230
PpsI GAGTC 2 cut(s) 160, 230
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 307
SatI GCNGC 4 cut(s) 153, 305, 308, 385
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 160, 230
SetI ASST 6 cut(s) 78, 144, 190, 300, 309, 382
SfaNI GCATC 1 cut(s) 378
SfcI CTRYAG 2 cut(s) 150, 276
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 39
Sse9I AATT 1 cut(s) 397
SsiI CCGC 1 cut(s) 384
SspMI CTAG 2 cut(s) 218, 311
TaaI ACNGT 1 cut(s) 273
TasI AATT 1 cut(s) 397
TauI GCSGC 1 cut(s) 387
TseI GCWGC 3 cut(s) 152, 304, 307
TspDTI ATGAA 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 39
XspI CTAG 2 cut(s) 218, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.