Rorug02G0519600

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000438
Physical Location & Seq
Reverse (-)
65181044 .. 65219033
37990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0519600.1

Sequence Viewer

Length: 651 bp
ATGTCGATGGGGAGTGATAGTACCTGGGTGGGGAAGAAGCCTCTGAGACGAATCGGAGGCATGTCCGATGCTCTCTCTATTGCTTCGGATCTTGGTTTCTCAGTCGCCGCTGCTCCCACTCCGGAAGAGCTTCAGAGCTGGTCGTGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTCACCAGTGTGCAAAGGAAAATAGCAGATCTGCAAGTTGAACTTCAAGGGAGAAAAGATGATAAAAATGTATCACATTTGACACATGTGAGCGAAATGGAAAAGAAGTGTGAAACTCTATCGAGGATTACTACGATTCTAAAAGACGTCATTCAGAACAAGGATCGTATCATTGCTCGTCTCCAACAACCATATTCACTCGATTGTATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTGTGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACGTTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCGTCATGCACCAGGTTTTTCGAAGCAATGTCTTCTATGAGGGAATCGTTTGCAACACTTCAACATCTTAGAGTAGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

216

Amino Acids

24.05

Weight (kDa)

6.11

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 19 - 208 9.1e-89 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 96, 363
AcuI CTGAAG 3 cut(s) 116, 465, 510
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 22, 151
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 3 cut(s) 233, 239, 629
AjnI CCWGG 2 cut(s) 23, 578
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 3 cut(s) 130, 138, 479
AluI AGCT 3 cut(s) 130, 138, 479
Alw26I GTCTC 2 cut(s) 40, 377
AlwI GGATC 2 cut(s) 96, 363
Aor13HI TCCGGA 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 110, 452
Asp700I GAANNNNTTC 3 cut(s) 129, 428, 543
AsuHPI GGTGA 3 cut(s) 167, 176, 187
AsuII TTCGAA 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 97, 439
BciT130I CCWGG 2 cut(s) 25, 580
BcoDI GTCTC 2 cut(s) 40, 377
BfaI CTAG 1 cut(s) 456
BglII AGATCT 1 cut(s) 220
BisI GCNGC 3 cut(s) 108, 111, 453
BlsI GCNGC 3 cut(s) 109, 112, 454
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 25, 580
BmiI GGNNCC 2 cut(s) 503, 519
BmrFI CCNGG 2 cut(s) 25, 580
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 565
Bpu14I TTCGAA 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 4 cut(s) 157, 198, 404, 496
Bse3DI GCAATG 2 cut(s) 363, 600
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 2 cut(s) 25, 580
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 2 cut(s) 363, 600
BseMII CTCAG 3 cut(s) 35, 114, 176
BseNI ACTGG 4 cut(s) 157, 198, 404, 496
BseXI GCAGC 2 cut(s) 97, 439
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 40, 377
BsmBI CGTCTC 2 cut(s) 40, 377
Bsp119I TTCGAA 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 88, 220, 355
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 36, 113, 177
BspEI TCCGGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 503, 519
BspPI GGATC 2 cut(s) 96, 363
BspQI GCTCTTC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 363, 600
BsrI ACTGG 4 cut(s) 157, 198, 404, 496
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 3 cut(s) 88, 220, 355
BssNI GRCGYC 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 25, 580
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 588
BstDEI CTNAG 5 cut(s) 44, 100, 185, 565, 635
BstKTI GATC 3 cut(s) 91, 223, 358
BstMAI GTCTC 2 cut(s) 40, 377
BstMBI GATC 3 cut(s) 88, 220, 355
BstMWI GCNNNNNNNGC 2 cut(s) 476, 485
BstNI CCWGG 2 cut(s) 25, 580
BstNSI RCATGY 2 cut(s) 64, 281
BstSCI CCNGG 2 cut(s) 23, 578
BstV1I GCAGC 2 cut(s) 97, 439
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 88, 220
BstYI RGATCY 2 cut(s) 88, 220
BtsIMutI CAGTG 3 cut(s) 205, 411, 503
CseI GACGC 1 cut(s) 558
CsiI ACCWGGT 1 cut(s) 578
Csp6I GTAC 2 cut(s) 21, 150
CviAII CATG 3 cut(s) 61, 278, 573
CviJI RGCY 7 cut(s) 40, 130, 138, 452, 479, 504, 520
CviKI_1 RGCY 7 cut(s) 40, 130, 138, 452, 479, 504, 520
CviQI GTAC 2 cut(s) 21, 150
DdeI CTNAG 5 cut(s) 44, 100, 185, 565, 635
DpnI GATC 3 cut(s) 90, 222, 357
DpnII GATC 3 cut(s) 88, 220, 355
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 116, 465, 510
EcoRII CCWGG 2 cut(s) 23, 578
Esp3I CGTCTC 2 cut(s) 40, 377
FaeI CATG 3 cut(s) 64, 281, 576
FaiI YATR 6 cut(s) 62, 279, 385, 532, 574, 605
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 3 cut(s) 60, 277, 572
Fnu4HI GCNGC 3 cut(s) 108, 111, 453
Fsp4HI GCNGC 3 cut(s) 108, 111, 453
FspBI CTAG 1 cut(s) 456
GluI GCNGC 3 cut(s) 108, 111, 453
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 558
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 64, 281, 576
HinfI GANTC 3 cut(s) 51, 328, 611
HpaII CCGG 1 cut(s) 122
HphI GGTGA 3 cut(s) 167, 176, 187
Hpy188I TCNGA 9 cut(s) 45, 56, 67, 88, 135, 186, 348, 423, 436
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 442, 534
HpyCH4IV ACGT 2 cut(s) 339, 509
HpyCH4V TGCA 4 cut(s) 205, 226, 576, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 485
HpyF3I CTNAG 5 cut(s) 44, 100, 185, 565, 635
HpySE526I ACGT 2 cut(s) 339, 509
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 64, 281, 576
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 88, 220, 355
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 4 cut(s) 118, 467, 501, 517
Lsp1109I GCAGC 2 cut(s) 97, 439
LweI GCATC 1 cut(s) 58
MabI ACCWGGT 1 cut(s) 578
MaeI CTAG 1 cut(s) 456
MaeII ACGT 2 cut(s) 339, 509
MalI GATC 3 cut(s) 90, 222, 357
MboI GATC 3 cut(s) 88, 220, 355
MboII GAAGA 3 cut(s) 46, 137, 591
MflI RGATCY 2 cut(s) 88, 220
MluCI AATT 3 cut(s) 428, 437, 552
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 6 cut(s) 50, 51, 180, 309, 531, 600
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 3 cut(s) 129, 428, 543
MseI TTAA 2 cut(s) 473, 513
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 25, 580
MvaI CCWGG 2 cut(s) 25, 580
MwoI GCNNNNNNNGC 2 cut(s) 476, 485
NdeII GATC 3 cut(s) 88, 220, 355
NlaIII CATG 3 cut(s) 64, 281, 576
NlaIV GGNNCC 2 cut(s) 503, 519
NspI RCATGY 2 cut(s) 64, 281
NspV TTCGAA 1 cut(s) 588
OliI CACNNNNGTG 1 cut(s) 200
PciI ACATGT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 3 cut(s) 129, 428, 543
PfeI GAWTC 3 cut(s) 51, 328, 611
PkrI GCNGC 3 cut(s) 109, 112, 454
PscI ACATGT 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 23, 578
PspGI CCWGG 2 cut(s) 23, 578
PspN4I GGNNCC 2 cut(s) 503, 519
PsuI RGATCY 2 cut(s) 88, 220
RsaI GTAC 2 cut(s) 22, 151
RsaNI GTAC 2 cut(s) 21, 150
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 473, 513
SatI GCNGC 3 cut(s) 108, 111, 453
Sau3AI GATC 3 cut(s) 88, 220, 355
ScaI AGTACT 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 25, 580
SetI ASST 9 cut(s) 26, 132, 140, 166, 342, 481, 512, 584, 646
SexAI ACCWGGT 1 cut(s) 578
SfaNI GCATC 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 3 cut(s) 428, 437, 552
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 23, 578
TaiI ACGT 2 cut(s) 342, 512
TaqI TCGA 4 cut(s) 5, 314, 393, 588
TasI AATT 3 cut(s) 428, 437, 552
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 51, 328, 611
Tru1I TTAA 2 cut(s) 473, 513
Tru9I TTAA 2 cut(s) 473, 513
TscAI CASTG 3 cut(s) 205, 411, 503
TseI GCWGC 2 cut(s) 110, 452
TspDTI ATGAA 1 cut(s) 461
TspRI CASTG 3 cut(s) 205, 411, 503
XceI RCATGY 2 cut(s) 64, 281
XmnI GAANNNNTTC 3 cut(s) 129, 428, 543
XspI CTAG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 340
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.