Rh2BG597000

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000438
Physical Location & Seq
Forward (+)
81916228 .. 81917064
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG597000.1

Sequence Viewer

Length: 837 bp
ATGCCTGCCATGAACACGCAGGAGTTTGCTTGGGCATGCCTCGGACACAAGGCTATGCAGAAAAATGTGTTTGAGCTTATGCTCAGAAACAACAAATCAAGGAAATCAGCAGAGTGGTTACTTTGCAACTCATCCTATGACCTTGAGCCTGCAGCATTTACCATGACTCCACACATTCTACCAATAGGTCCACTTTTGGCAAGCAATCGGCTCAAACTAGACTTTGCAGGAGAAGACTCTTGCTTGACTTGGCTTGATCAACAAGCAACACGGTCTGTAGTGTATGTTGCTTTTGGTAGCTTAGCAGTTTTTAATCCAATACAGTTCAAAGAATTGGCCCTGGGGCTAGAACTCTCCAATAGACCATTCTTGTGGGTGGCAAGACCCGATATGATACACGCTGAAAATGAAGTCTACCTGAAAGAATTCAATGACAGGGTAGCTACTCAAGGACTGATAGTAGCTTGGGCACCTCAACAGAGGGTTCTGTCCCATCGCTCCATCGCTTGTTTTGTGAGCCATTGTGGTTGGAATTCAATCATGGAAGGTTTAGGATATGGAGTCCCTTTCTTATGCTGGCCTTACTTCGCTGATCAGTTTCTTAATCGAACCTACATTTCAGAGATTTGGAAGATTGGTTTGGGGTTTGAAAGAGATGAAAGTGGTTTCATAACAAGCAGAGAAATCAAAAATAAGGTGGAGCAGCTGCTAGGAAATGGGGAAATAAAAGCAAGGGCTTTGGATATCAAGAAACTGGTTATGGATGGCATCAAAGAAGGTGGCGGCTCAAACAAGAATTTCAAGGATTTTGTTGAATGGATAAAGGGATTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

278

Amino Acids

31.53

Weight (kDa)

6.96

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 79 - 251 4.8e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 414
AciI CCGC 1 cut(s) 783
AcsI RAATTY 3 cut(s) 425, 532, 796
AgsI TTSAA 6 cut(s) 328, 430, 537, 650, 802, 815
AjnI CCWGG 1 cut(s) 339
AjuI GAANNNNNNNTTGG 4 cut(s) 350, 382, 623, 655
AluBI AGCT 5 cut(s) 76, 300, 443, 464, 706
AluI AGCT 5 cut(s) 76, 300, 443, 464, 706
AoxI GGCC 2 cut(s) 336, 578
ApeKI GCWGC 3 cut(s) 152, 703, 706
ApoI RAATTY 3 cut(s) 425, 532, 796
Asp700I GAANNNNTTC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 188, 337
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 164, 693, 715
BccI CCATC 3 cut(s) 501, 509, 758
BciT130I CCWGG 1 cut(s) 341
BclI TGATCA 2 cut(s) 256, 592
BfaI CTAG 3 cut(s) 218, 347, 710
BfmI CTRYAG 2 cut(s) 150, 276
BisI GCNGC 4 cut(s) 153, 704, 707, 784
BlpI GCTNAGC 1 cut(s) 301
BlsI GCNGC 4 cut(s) 154, 705, 708, 785
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 188, 337
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 164, 432
BsaJI CCNNGG 3 cut(s) 40, 339, 340
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse1I ACTGG 1 cut(s) 759
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 40, 339, 340
BseGI GGATG 2 cut(s) 131, 769
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 759
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 3 cut(s) 164, 693, 715
BshFI GGCC 2 cut(s) 338, 580
BshNI GGYRCC 1 cut(s) 469
BslFI GGGAC 2 cut(s) 475, 548
BsmFI GGGAC 2 cut(s) 475, 548
BsnI GGCC 2 cut(s) 338, 580
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 2 cut(s) 256, 592
Bsp1720I GCTNAGC 1 cut(s) 301
BspACI CCGC 1 cut(s) 783
BspANI GGCC 2 cut(s) 338, 580
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 759
BssECI CCNNGG 3 cut(s) 40, 339, 340
BssMI GATC 2 cut(s) 256, 592
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 273, 324
BstC8I GCNNGC 5 cut(s) 6, 37, 150, 202, 578
BstDEI CTNAG 2 cut(s) 83, 301
BstF5I GGATG 2 cut(s) 131, 769
BstKTI GATC 2 cut(s) 259, 595
BstMBI GATC 2 cut(s) 256, 592
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 2 cut(s) 150, 276
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 164, 693, 715
BstV2I GAAGAC 1 cut(s) 240
BstXI CCANNNNNNTGG 1 cut(s) 372
BsuRI GGCC 2 cut(s) 338, 580
BtgZI GCGATG 2 cut(s) 479, 487
BtsCI GGATG 2 cut(s) 131, 769
Cac8I GCNNGC 5 cut(s) 6, 37, 150, 202, 578
Cfr13I GGNCC 2 cut(s) 188, 337
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviAII CATG 4 cut(s) 10, 36, 163, 541
DdeI CTNAG 2 cut(s) 83, 301
DpnI GATC 2 cut(s) 258, 594
DpnII GATC 2 cut(s) 256, 592
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 188
EcoRI GAATTC 2 cut(s) 425, 532
EcoRII CCWGG 1 cut(s) 339
EcoRV GATATC 1 cut(s) 745
FaeI CATG 4 cut(s) 13, 39, 166, 544
FaqI GGGAC 2 cut(s) 475, 548
FatI CATG 4 cut(s) 9, 35, 162, 540
FbaI TGATCA 2 cut(s) 256, 592
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 4 cut(s) 153, 704, 707, 784
FokI GGATG 2 cut(s) 118, 776
Fsp4HI GCNGC 4 cut(s) 153, 704, 707, 784
FspBI CTAG 3 cut(s) 218, 347, 710
GluI GCNGC 4 cut(s) 153, 704, 707, 784
HaeIII GGCC 2 cut(s) 338, 580
Hin1II CATG 4 cut(s) 13, 39, 166, 544
HinfI GANTC 3 cut(s) 166, 236, 561
Hpy166II GTNNAC 2 cut(s) 191, 415
Hpy188I TCNGA 3 cut(s) 44, 86, 622
Hpy188III TCNNGA 1 cut(s) 748
Hpy8I GTNNAC 2 cut(s) 191, 415
HpyAV CCTTC 2 cut(s) 539, 770
HpyCH4III ACNGT 2 cut(s) 273, 324
HpyCH4V TGCA 4 cut(s) 58, 126, 152, 227
HpyF3I CTNAG 2 cut(s) 83, 301
Hsp92II CATG 4 cut(s) 13, 39, 166, 544
Ksp22I TGATCA 2 cut(s) 256, 592
Kzo9I GATC 2 cut(s) 256, 592
LmnI GCTCC 2 cut(s) 503, 700
Lsp1109I GCAGC 3 cut(s) 164, 693, 715
LweI GCATC 1 cut(s) 777
MaeI CTAG 3 cut(s) 218, 347, 710
MaeIII GTNAC 1 cut(s) 117
MalI GATC 2 cut(s) 258, 594
MboI GATC 2 cut(s) 256, 592
MboII GAAGA 2 cut(s) 245, 643
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 4 cut(s) 332, 425, 532, 796
MlyI GAGTC 3 cut(s) 160, 230, 570
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 3 cut(s) 50, 474, 483
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 2 cut(s) 312, 603
MslI CAYNNNNRTG 1 cut(s) 370
MspA1I CMGCKG 1 cut(s) 706
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
NdeII GATC 2 cut(s) 256, 592
NlaIII CATG 4 cut(s) 13, 39, 166, 544
NlaIV GGNNCC 1 cut(s) 471
NspI RCATGY 1 cut(s) 39
PaeI GCATGC 1 cut(s) 39
PasI CCCWGGG 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 425
PkrI GCNGC 4 cut(s) 154, 705, 708, 785
PleI GAGTC 3 cut(s) 160, 230, 569
PpsI GAGTC 3 cut(s) 160, 230, 569
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 2 cut(s) 188, 337
PstI CTGCAG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 706
RseI CAYNNNNRTG 1 cut(s) 370
SaqAI TTAA 2 cut(s) 312, 603
SatI GCNGC 4 cut(s) 153, 704, 707, 784
Sau3AI GATC 2 cut(s) 256, 592
Sau96I GGNCC 2 cut(s) 188, 337
SchI GAGTC 3 cut(s) 160, 230, 570
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 1 cut(s) 777
SfcI CTRYAG 2 cut(s) 150, 276
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 2 cut(s) 143, 447
SmoI CTYRAG 2 cut(s) 143, 447
SphI GCATGC 1 cut(s) 39
Sse9I AATT 4 cut(s) 332, 425, 532, 796
SsiI CCGC 1 cut(s) 783
SspMI CTAG 3 cut(s) 218, 347, 710
StyD4I CCNGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 273, 324
TaqI TCGA 1 cut(s) 607
TasI AATT 4 cut(s) 332, 425, 532, 796
TauI GCSGC 1 cut(s) 786
Tru1I TTAA 2 cut(s) 312, 603
Tru9I TTAA 2 cut(s) 312, 603
TseI GCWGC 3 cut(s) 152, 703, 706
TspDTI ATGAA 4 cut(s) 26, 423, 658, 672
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 3 cut(s) 425, 532, 796
XceI RCATGY 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 3 cut(s) 218, 347, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.