Rh2DG607500

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000438
Physical Location & Seq
Forward (+)
84128586 .. 84131639
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG607500.1

Sequence Viewer

Length: 798 bp
ATGAGCAAGCCACATATTATAGCTATTCCTTTCCCGGCACAAGGCCATGTAATGCCCTTGATGGCGTTCTCGCAGTGCTTAGCACGTCATGGCTTCAAAGTCACATTTGTGAACACACAACATATTCACAAGCAAATTGTGAATGCAATATCCGATGAAAGTCATATAAGGAATGATCATGTTCATCTGGTTTCAATTCCAGATGGGTTAGAATCCCAAGAGGAAAGGAATGGGCCAGGGCTTCTATCCAAAGCAATACAAGCAATCATGCACCAGAATTTGGAGGATCTCATAGAGAAGATCAACAAAGAGGAAGGTGCAAAAATCACTTGTCTCATAGCTGATGAGAGTTGTGGGTGGGCTCTGGAAGTGGCACAAAAATTGAAGATTGCGAGGGTGGTTGCCTTTTGGCCTGCAGCAGCTGCAACTTTGGTATTGAACTTTTGTATCCCAAAATTAATTCATGAAGGAATCATTGACGATGATGGAACTGTATTGAAAAGCCAGATGGTTCAGTTGGCACCAAAAATGCCCATGATTAAATCTACAAACTTTGTGTGGGCGTGTACAGGAAATTCAAGCACTCAGAAAATCCTATTCCAATTTATGGAAAGAACCAACAAGAATGCAAAATTGGTAGACTGGCTTGTTTGCAACTCAGCATACGAAATGGAGCCAGCAGCATTCGCTTTGGAACCACAGATATTACCAATAGGCCCGCTTTTGGCTAGCAGCCGCCTTGGCCACTCAGCAGGCAGCTTGTGGCCAACAGACTCAACTTGCCTAAATTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

265

Amino Acids

29.29

Weight (kDa)

6.59

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 6 - 146 2.3e-08 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccB7I CCANNNNNTGG 2 cut(s) 280, 607
AccI GTMKAC 1 cut(s) 639
AciI CCGC 2 cut(s) 719, 736
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 2 cut(s) 742, 764
AcsI RAATTY 2 cut(s) 277, 574
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 4 cut(s) 41, 280, 607, 724
AgsI TTSAA 6 cut(s) 97, 195, 385, 439, 499, 579
AjiI CACGTC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 4 cut(s) 23, 341, 422, 759
AluI AGCT 4 cut(s) 23, 341, 422, 759
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 6 cut(s) 43, 233, 410, 715, 742, 764
ApeKI GCWGC 6 cut(s) 416, 419, 422, 680, 732, 756
ApoI RAATTY 2 cut(s) 277, 574
AseI ATTAAT 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 233, 716
AsuC2I CCSGG 1 cut(s) 35
AsuNHI GCTAGC 1 cut(s) 728
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BalI TGGCCA 2 cut(s) 744, 766
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 364
BbvI GCAGC 6 cut(s) 409, 428, 431, 692, 744, 768
BccI CCATC 4 cut(s) 55, 197, 479, 502
BciT130I CCWGG 1 cut(s) 237
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 414
BfuI GTATCC 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 741
BisI GCNGC 7 cut(s) 417, 420, 423, 681, 733, 736, 757
BlpI GCTNAGC 1 cut(s) 79
BlsI GCNGC 7 cut(s) 418, 421, 424, 682, 734, 737, 758
Bme1390I CCNGG 2 cut(s) 35, 237
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 233, 716
BmiI GGNNCC 3 cut(s) 522, 675, 696
BmrFI CCNGG 2 cut(s) 35, 237
BmtI GCTAGC 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 236, 739
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 280, 607, 724
Bse1I ACTGG 1 cut(s) 647
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 236, 739
BseLI CCNNNNNNNGG 4 cut(s) 41, 280, 607, 724
BseMII CTCAG 3 cut(s) 599, 672, 762
BseNI ACTGG 1 cut(s) 647
BseXI GCAGC 6 cut(s) 409, 428, 431, 692, 744, 768
BshFI GGCC 6 cut(s) 45, 235, 412, 717, 744, 766
BshNI GGYRCC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 41, 280, 607, 724
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 3 cut(s) 148, 631, 683
BsnI GGCC 6 cut(s) 45, 235, 412, 717, 744, 766
Bsp1286I GDGCHC 1 cut(s) 364
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 3 cut(s) 175, 286, 300
Bsp1720I GCTNAGC 1 cut(s) 79
BspACI CCGC 2 cut(s) 719, 736
BspANI GGCC 6 cut(s) 45, 235, 412, 717, 744, 766
BspCNI CTCAG 3 cut(s) 598, 671, 761
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 522, 675, 696
BspMAI CTGCAG 1 cut(s) 418
BspOI GCTAGC 1 cut(s) 732
BspPI GGATC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 520
BsrGI TGTACA 1 cut(s) 566
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 2 cut(s) 236, 739
BssMI GATC 3 cut(s) 175, 286, 300
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 493
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 566
BstC8I GCNNGC 6 cut(s) 8, 414, 678, 719, 730, 754
BstDEI CTNAG 4 cut(s) 79, 585, 658, 748
BstKTI GATC 3 cut(s) 178, 289, 303
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 175, 286, 300
BstMWI GCNNNNNNNGC 4 cut(s) 260, 422, 686, 741
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 33, 235
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 6 cut(s) 409, 428, 431, 692, 744, 768
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 6 cut(s) 45, 235, 412, 717, 744, 766
BtrI CACGTC 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 6 cut(s) 8, 414, 678, 719, 730, 754
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 233, 716
Csp6I GTAC 1 cut(s) 567
CviAII CATG 6 cut(s) 47, 89, 179, 268, 464, 535
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 4 cut(s) 79, 585, 658, 748
DpnI GATC 3 cut(s) 177, 288, 302
DpnII GATC 3 cut(s) 175, 286, 300
EaeI YGGCCR 2 cut(s) 742, 764
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 6 cut(s) 50, 92, 182, 271, 467, 538
FatI CATG 6 cut(s) 46, 88, 178, 267, 463, 534
FauI CCCGC 1 cut(s) 726
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 7 cut(s) 417, 420, 423, 681, 733, 736, 757
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 7 cut(s) 417, 420, 423, 681, 733, 736, 757
FspBI CTAG 1 cut(s) 729
GluI GCNGC 7 cut(s) 417, 420, 423, 681, 733, 736, 757
HaeIII GGCC 6 cut(s) 45, 235, 412, 717, 744, 766
HapII CCGG 1 cut(s) 35
Hin1II CATG 6 cut(s) 50, 92, 182, 271, 467, 538
HinfI GANTC 3 cut(s) 212, 471, 773
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 3 cut(s) 112, 567, 640
Hpy188I TCNGA 2 cut(s) 154, 588
Hpy188III TCNNGA 3 cut(s) 200, 365, 464
Hpy8I GTNNAC 3 cut(s) 112, 567, 640
HpyAV CCTTC 2 cut(s) 308, 461
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 7 cut(s) 146, 271, 320, 416, 425, 629, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 422, 686, 741
HpyF3I CTNAG 4 cut(s) 79, 585, 658, 748
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 6 cut(s) 50, 92, 182, 271, 467, 538
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 3 cut(s) 175, 286, 300
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 6 cut(s) 409, 428, 431, 692, 744, 768
MaeI CTAG 1 cut(s) 729
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 177, 288, 302
MboI GATC 3 cut(s) 175, 286, 300
MboII GAAGA 2 cut(s) 310, 397
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 364
MlsI TGGCCA 2 cut(s) 744, 766
MluNI TGGCCA 2 cut(s) 744, 766
MlyI GAGTC 1 cut(s) 767
MnlI CCTC 4 cut(s) 214, 277, 304, 387
Mox20I TGGCCA 2 cut(s) 744, 766
MscI TGGCCA 2 cut(s) 744, 766
MseI TTAA 2 cut(s) 458, 540
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 2 cut(s) 744, 766
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 35, 237
Mva1269I GAATGC 3 cut(s) 148, 631, 683
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 260, 422, 686, 741
NciI CCSGG 1 cut(s) 35
NdeII GATC 3 cut(s) 175, 286, 300
NheI GCTAGC 1 cut(s) 728
NlaIII CATG 6 cut(s) 50, 92, 182, 271, 467, 538
NlaIV GGNNCC 3 cut(s) 522, 675, 696
NmuCI GTSAC 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 463
PctI GAATGC 3 cut(s) 148, 631, 683
PfeI GAWTC 2 cut(s) 212, 471
PflMI CCANNNNNTGG 2 cut(s) 280, 607
PkrI GCNGC 7 cut(s) 418, 421, 424, 682, 734, 737, 758
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 3 cut(s) 522, 675, 696
PspPI GGNCC 2 cut(s) 233, 716
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 458, 540
SatI GCNGC 7 cut(s) 417, 420, 423, 681, 733, 736, 757
Sau3AI GATC 3 cut(s) 175, 286, 300
Sau96I GGNCC 2 cut(s) 233, 716
SchI GAGTC 1 cut(s) 767
ScrFI CCNGG 2 cut(s) 35, 237
SduI GDGCHC 1 cut(s) 364
SetI ASST 6 cut(s) 25, 88, 319, 343, 424, 761
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 107
SsiI CCGC 2 cut(s) 719, 736
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 2 cut(s) 33, 235
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 1 cut(s) 88
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 738
TfiI GAWTC 2 cut(s) 212, 471
Tru1I TTAA 2 cut(s) 458, 540
Tru9I TTAA 2 cut(s) 458, 540
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 6 cut(s) 416, 419, 422, 680, 732, 756
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 4 cut(s) 171, 173, 452, 480
TspRI CASTG 1 cut(s) 80
Van91I CCANNNNNTGG 2 cut(s) 280, 607
VspI ATTAAT 1 cut(s) 458
XapI RAATTY 2 cut(s) 277, 574
XmiI GTMKAC 1 cut(s) 639
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.