Rh2DG607400

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000438
Physical Location & Seq
Forward (+)
84127280 .. 84127570
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG607400.1

Sequence Viewer

Length: 291 bp
ATGGAAGGTGTAAGCAACGGGGTTCCTTTCTTGTGCTGGCCATACTTTGCAGACCAGCTCATTAACGAGAGCTACATATGTGATGTTTGGAAAGTGGGATTGAGGTTTGATAAGAACAAGAGTGGGATCGTCACGAAAGGAGAAATCAAGGACAAGGTGGAACAGCTTCTTGGAGATGAAAATTATAAAGCAAGGGCTTCCAAACTCAAGGAAATGACCGTCACTAATATCAAAGAAGGTGGCCAATCGAGCATGAACTTTAAGAATTTCTTTGAATGGATGCAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

96

Amino Acids

11.04

Weight (kDa)

6.25

Isoelectric Point (pI)

25.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 71 2.4e-06 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 2 cut(s) 38, 241
AcsI RAATTY 1 cut(s) 265
AgsI TTSAA 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 3 cut(s) 58, 72, 166
AluI AGCT 3 cut(s) 58, 72, 166
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 38, 241
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 165
BalI TGGCCA 2 cut(s) 40, 243
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 191
BseGI GGATG 1 cut(s) 285
BshFI GGCC 2 cut(s) 40, 243
BsnI GGCC 2 cut(s) 40, 243
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 2 cut(s) 40, 243
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 134
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 38
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 40, 243
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 38
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 40, 58, 72, 166, 197, 243
CviKI_1 RGCY 6 cut(s) 40, 58, 72, 166, 197, 243
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 2 cut(s) 38, 241
FaeI CATG 1 cut(s) 256
FaiI YATR 6 cut(s) 43, 77, 79, 186, 254, 289
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 1 cut(s) 252
FauNDI CATATG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 40, 243
Hin1II CATG 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 50, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 2 cut(s) 22, 68
LweI GCATC 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 130, 220
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MlsI TGGCCA 2 cut(s) 40, 243
MluCI AATT 2 cut(s) 181, 265
MluNI TGGCCA 2 cut(s) 40, 243
MnlI CCTC 1 cut(s) 96
Mox20I TGGCCA 2 cut(s) 40, 243
MroXI GAANNNNTTC 1 cut(s) 165
MscI TGGCCA 2 cut(s) 40, 243
MseI TTAA 2 cut(s) 63, 261
Msp20I TGGCCA 2 cut(s) 40, 243
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeI CATATG 1 cut(s) 77
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 2 cut(s) 130, 220
PdmI GAANNNNTTC 1 cut(s) 165
PsiI TTATAA 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 63, 261
Sau3AI GATC 1 cut(s) 126
SetI ASST 7 cut(s) 10, 60, 74, 107, 159, 168, 241
SfaNI GCATC 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 181, 265
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 248
TasI AATT 2 cut(s) 181, 265
Tru1I TTAA 2 cut(s) 63, 261
Tru9I TTAA 2 cut(s) 63, 261
TseFI GTSAC 2 cut(s) 130, 220
Tsp45I GTSAC 2 cut(s) 130, 220
TspDTI ATGAA 2 cut(s) 192, 269
XapI RAATTY 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.