Rh2BG597500

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000438
Physical Location & Seq
Forward (+)
81936435 .. 81937337
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG597500.1

Sequence Viewer

Length: 903 bp
ATGATCATTCAATTTTGGCATGCAGGAACTGTATTGAAAAGCCAGATGGTTCAGTTGGCACCAAAAATGCCCATGATTAAATCTACAAACTTTGTGTGGGCGTGTACAGGAAATTCAAGCACTCAGAAAATCCTATTCCAATTTATGGAAAGAACCAACAAGAATGCAAATTTGGTAGACTGGCTTGTTTGCAACTCAACATACGAAATGGAGCCAACAGCATTCGCTTTGGAACCACAGATATTACCAATAGGCCCGCTTTTAGCTAGCAGCCGCCTTGGCAACTCAGCAGGCAGCTTGTGGCCAACAGACTCAACTTGCTTAAATTGGTTGGATAAAAAACCACCTTGCTCAGTGATCTATGTTGCATTTGGTAGCACAACAGTTTTCAATCAAACCCAATTCCAAGAACTGGCTTTAGCTCTTGAGTTGTCTAATAGGCCATTCCTCTGGGTTGTGAGACCAGATACCAGTGATAACATTCCCTACCCTGAAGGATATCATGACAGAGTAGGATCTAATGGACTAATGGTGAGCTGGGCCCCACAACAGAACGTTCTGGCCCATCCTTCAATTGCTTGCTTCCTAAGTCATTGTGGGTGGAACTCTACCATGGAAGGTGTCAGCAATGGGGTTCCTTTCTTGTGCTGGCCATACTTTGCTGACCAGTTCATCAATGAGAGCTACATTTGCGATGTTTGGGAGGTCGGATTGGGGTTTGATAAGAATGAAAGTGGGATCATTACTCAAGGAGAAATCAAGAACAAAATCGAGCACTTGCTTGGTGATAAAGACTTCAAAGCAAGGGCTTCCAAACTCAAGGAAATGGCCATGACAACTGTCAAAGAAGGAGGCCAATCTAACAAGATATTGAAGAATTTAATTGAATGGATCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

300

Amino Acids

33.63

Weight (kDa)

5.98

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 119 - 274 6.6e-23 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 177 - 278 7.8e-07 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AccB7I CCANNNNNTGG 2 cut(s) 145, 412
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 257, 274
AclI AACGTT 1 cut(s) 555
AclWI GGATC 3 cut(s) 523, 746, 899
AcoI YGGCCR 3 cut(s) 302, 650, 828
AcsI RAATTY 3 cut(s) 112, 169, 877
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 145, 412
AgsI TTSAA 8 cut(s) 11, 37, 117, 391, 573, 799, 874, 887
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 5 cut(s) 266, 297, 422, 537, 684
AluI AGCT 5 cut(s) 266, 297, 422, 537, 684
Alw21I GWGCWC 1 cut(s) 777
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 3 cut(s) 523, 746, 899
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 8 cut(s) 253, 302, 440, 540, 561, 650, 828, 853
ApaI GGGCCC 1 cut(s) 544
ApeKI GCWGC 2 cut(s) 270, 294
ApoI RAATTY 3 cut(s) 112, 169, 877
AspS9I GGNCC 4 cut(s) 254, 540, 541, 562
AsuHPI GGTGA 2 cut(s) 544, 797
AsuNHI GCTAGC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 544
BalI TGGCCA 3 cut(s) 304, 652, 830
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 777
BbvI GCAGC 2 cut(s) 282, 306
BccI CCATC 2 cut(s) 40, 573
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 1 cut(s) 267
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 3 cut(s) 271, 274, 295
BlsI GCNGC 3 cut(s) 272, 275, 296
BmgT120I GGNCC 4 cut(s) 254, 540, 541, 562
BmiI GGNNCC 6 cut(s) 60, 213, 234, 542, 543, 636
BmtI GCTAGC 1 cut(s) 270
BoxI GACNNNNGTC 1 cut(s) 839
BpuEI CTTGAG 3 cut(s) 446, 732, 803
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 277, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 412
Bse1I ACTGG 4 cut(s) 185, 417, 471, 667
Bse3DI GCAATG 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 277, 612
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 2 cut(s) 145, 412
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 3 cut(s) 137, 300, 366
BseNI ACTGG 4 cut(s) 185, 417, 471, 667
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 2 cut(s) 282, 306
BseYI CCCAGC 1 cut(s) 537
BshFI GGCC 8 cut(s) 255, 304, 442, 542, 563, 652, 830, 855
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 777
BslI CCNNNNNNNGG 2 cut(s) 145, 412
BsmAI GTCTC 1 cut(s) 454
BsmI GAATGC 2 cut(s) 169, 221
BsnI GGCC 8 cut(s) 255, 304, 442, 542, 563, 652, 830, 855
Bso31I GGTCTC 1 cut(s) 454
Bsp120I GGGCCC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 544, 777
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 5 cut(s) 3, 357, 515, 738, 891
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 2 cut(s) 257, 274
BspANI GGCC 8 cut(s) 255, 304, 442, 542, 563, 652, 830, 855
BspCNI CTCAG 3 cut(s) 136, 299, 365
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 6 cut(s) 60, 213, 234, 542, 543, 636
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 523, 746, 899
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 4 cut(s) 185, 417, 471, 667
BssECI CCNNGG 2 cut(s) 277, 612
BssMI GATC 5 cut(s) 3, 357, 515, 738, 891
BssT1I CCWWGG 2 cut(s) 277, 612
Bst4CI ACNGT 3 cut(s) 31, 385, 841
BstAUI TGTACA 1 cut(s) 104
BstC8I GCNNGC 6 cut(s) 21, 257, 268, 292, 580, 650
BstDEI CTNAG 4 cut(s) 123, 286, 352, 587
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 565
BstKTI GATC 5 cut(s) 6, 360, 518, 741, 894
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 5 cut(s) 3, 357, 515, 738, 891
BstMWI GCNNNNNNNGC 2 cut(s) 279, 690
BstNSI RCATGY 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 839
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 282, 306
BstX2I RGATCY 1 cut(s) 515
BstXI CCANNNNNNTGG 1 cut(s) 450
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 8 cut(s) 255, 304, 442, 542, 563, 652, 830, 855
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 2 cut(s) 360, 478
Cac8I GCNNGC 6 cut(s) 21, 257, 268, 292, 580, 650
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 4 cut(s) 254, 540, 541, 562
Csp6I GTAC 1 cut(s) 105
CviAII CATG 5 cut(s) 20, 73, 503, 613, 832
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 4 cut(s) 123, 286, 352, 587
DpnI GATC 5 cut(s) 5, 359, 517, 740, 893
DpnII GATC 5 cut(s) 3, 357, 515, 738, 891
EaeI YGGCCR 3 cut(s) 302, 650, 828
Eco130I CCWWGG 2 cut(s) 277, 612
Eco24I GRGCYC 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 541
EcoRV GATATC 1 cut(s) 500
EcoT14I CCWWGG 2 cut(s) 277, 612
EcoT38I GRGCYC 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 277, 612
FaeI CATG 5 cut(s) 23, 76, 506, 616, 835
FatI CATG 5 cut(s) 19, 72, 502, 612, 831
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 271, 274, 295
FokI GGATG 1 cut(s) 552
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 3 cut(s) 271, 274, 295
FspBI CTAG 1 cut(s) 267
GluI GCNGC 3 cut(s) 271, 274, 295
GsaI CCCAGC 1 cut(s) 541
HaeIII GGCC 8 cut(s) 255, 304, 442, 542, 563, 652, 830, 855
Hin1II CATG 5 cut(s) 23, 76, 506, 616, 835
HinfI GANTC 1 cut(s) 311
HphI GGTGA 2 cut(s) 544, 797
Hpy166II GTNNAC 2 cut(s) 105, 178
Hpy188I TCNGA 2 cut(s) 126, 710
Hpy188III TCNNGA 3 cut(s) 425, 503, 760
Hpy8I GTNNAC 2 cut(s) 105, 178
HpyAV CCTTC 4 cut(s) 488, 579, 611, 842
HpyCH4III ACNGT 3 cut(s) 31, 385, 841
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 23, 167, 192, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 690
HpyF3I CTNAG 4 cut(s) 123, 286, 352, 587
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 5 cut(s) 23, 76, 506, 616, 835
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 357, 515, 738, 891
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 282, 306
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 555
MalI GATC 5 cut(s) 5, 359, 517, 740, 893
MboI GATC 5 cut(s) 3, 357, 515, 738, 891
MboII GAAGA 1 cut(s) 886
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 2 cut(s) 544, 777
MlsI TGGCCA 3 cut(s) 304, 652, 830
MluCI AATT 9 cut(s) 11, 112, 140, 169, 325, 401, 573, 877, 882
MluNI TGGCCA 3 cut(s) 304, 652, 830
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 2 cut(s) 312, 688
MnlI CCTC 3 cut(s) 458, 697, 845
Mox20I TGGCCA 3 cut(s) 304, 652, 830
MscI TGGCCA 3 cut(s) 304, 652, 830
MseI TTAA 3 cut(s) 78, 323, 881
Msp20I TGGCCA 3 cut(s) 304, 652, 830
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 169, 221
MwoI GCNNNNNNNGC 2 cut(s) 279, 690
NcoI CCATGG 1 cut(s) 612
NdeII GATC 5 cut(s) 3, 357, 515, 738, 891
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 5 cut(s) 23, 76, 506, 616, 835
NlaIV GGNNCC 6 cut(s) 60, 213, 234, 542, 543, 636
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 502
PctI GAATGC 2 cut(s) 169, 221
PflMI CCANNNNNTGG 2 cut(s) 145, 412
PkrI GCNGC 3 cut(s) 272, 275, 296
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PshAI GACNNNNGTC 1 cut(s) 839
Psp1406I AACGTT 1 cut(s) 555
PspFI CCCAGC 1 cut(s) 537
PspN4I GGNNCC 6 cut(s) 60, 213, 234, 542, 543, 636
PspOMI GGGCCC 1 cut(s) 540
PspPI GGNCC 4 cut(s) 254, 540, 541, 562
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 78, 323, 881
SatI GCNGC 3 cut(s) 271, 274, 295
Sau3AI GATC 5 cut(s) 3, 357, 515, 738, 891
Sau96I GGNCC 4 cut(s) 254, 540, 541, 562
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 2 cut(s) 544, 777
SetI ASST 9 cut(s) 268, 299, 349, 424, 539, 558, 622, 686, 708
SmlI CTYRAG 3 cut(s) 425, 747, 818
SmoI CTYRAG 3 cut(s) 425, 747, 818
SphI GCATGC 1 cut(s) 23
Sse9I AATT 9 cut(s) 11, 112, 140, 169, 325, 401, 573, 877, 882
SsiI CCGC 2 cut(s) 257, 274
SspMI CTAG 1 cut(s) 267
StyI CCWWGG 2 cut(s) 277, 612
TaaI ACNGT 3 cut(s) 31, 385, 841
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 771
TasI AATT 9 cut(s) 11, 112, 140, 169, 325, 401, 573, 877, 882
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 3 cut(s) 78, 323, 881
Tru9I TTAA 3 cut(s) 78, 323, 881
TscAI CASTG 2 cut(s) 360, 478
TseI GCWGC 2 cut(s) 270, 294
TspDTI ATGAA 2 cut(s) 661, 744
TspRI CASTG 2 cut(s) 360, 478
Van91I CCANNNNNTGG 2 cut(s) 145, 412
XapI RAATTY 3 cut(s) 112, 169, 877
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.