Rorug02G0519400

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000438
Physical Location & Seq
Reverse (-)
65172032 .. 65173486
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0519400.1

Sequence Viewer

Length: 588 bp
ATGTTCACCCTTGAGCAACATATGAAATCTGAACGGAAGAATAACCTCTCTTCTGAAGCGATTGATGCCTGTCCTTTCAAGATTATATATGCTCTCGAAGATATGCTGGATCGTATCATTGCTCGTCTCCAACAGCCATATTCACTCAATTGCATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCGGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCATCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGGACCACATCAATATCTGCTACGAGGGAATCATTTGCAACACTTCAACATCTCAGAGTAGGTCATTCTGATACCGTTTCACCTATCACACCAGCCAAGGAATCCCGAAGAGTACCAGGGGTTTCCGATTGTGTAACTCCGCCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTAGCTATCAAAAGCTCAAGAAGGCCGAATATCAAGCATCAAGAAGCAGAGGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGAGTGTCATGGCCTCCTTCAGTTAAAAAGGCTGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

195

Amino Acids

21.88

Weight (kDa)

5.97

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 37 - 113 2.2e-30 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 428
AclWI GGATC 1 cut(s) 117
AcuI CTGAAG 3 cut(s) 75, 264, 549
AfaI GTAC 1 cut(s) 402
AgsI TTSAA 2 cut(s) 79, 335
AjnI CCWGG 2 cut(s) 403, 434
AluBI AGCT 4 cut(s) 453, 467, 477, 526
AluI AGCT 4 cut(s) 453, 467, 477, 526
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 117
AoxI GGCC 2 cut(s) 485, 557
ApeKI GCWGC 2 cut(s) 206, 578
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 360
AvaII GGWCC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 193, 565
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 2 cut(s) 405, 436
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 210, 537
BisI GCNGC 2 cut(s) 207, 579
BlsI GCNGC 2 cut(s) 208, 580
Bme1390I CCNGG 2 cut(s) 405, 436
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 3 cut(s) 257, 273, 292
BmrFI CCNGG 2 cut(s) 405, 436
BmsI GCATC 3 cut(s) 55, 242, 508
BpuEI CTTGAG 2 cut(s) 32, 463
BsaJI CCNNGG 3 cut(s) 384, 404, 434
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bse1I ACTGG 2 cut(s) 158, 250
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 405, 436
BseDI CCNNGG 3 cut(s) 384, 404, 434
BseGI GGATG 1 cut(s) 520
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 158, 250
BseXI GCAGC 2 cut(s) 193, 565
BshFI GGCC 2 cut(s) 487, 559
BslFI GGGAC 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 2 cut(s) 487, 559
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 487, 559
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 257, 273, 292
BspPI GGATC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 2 cut(s) 158, 250
BssECI CCNNGG 3 cut(s) 384, 404, 434
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 405, 436
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 55, 391
BstAPI GCANNNNNTGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 341, 463
BstF5I GGATG 1 cut(s) 520
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 65, 230, 239
BstNI CCWGG 2 cut(s) 405, 436
BstSCI CCNGG 2 cut(s) 403, 434
BstV1I GCAGC 2 cut(s) 193, 565
BsuRI GGCC 2 cut(s) 487, 559
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 165, 257
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 401
CviAII CATG 1 cut(s) 555
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 341, 463
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 2 cut(s) 55, 391
EarI CTCTTC 2 cut(s) 55, 391
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 291
Eco57I CTGAAG 3 cut(s) 75, 264, 549
EcoRII CCWGG 2 cut(s) 403, 434
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 1 cut(s) 558
FaqI GGGAC 1 cut(s) 304
FatI CATG 1 cut(s) 554
FauNDI CATATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 207, 579
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 2 cut(s) 207, 579
FspBI CTAG 2 cut(s) 210, 537
GluI GCNGC 2 cut(s) 207, 579
HaeIII GGCC 2 cut(s) 487, 559
Hin1II CATG 1 cut(s) 558
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 2 cut(s) 317, 389
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 7 cut(s) 31, 55, 177, 190, 344, 358, 415
Hpy188III TCNNGA 5 cut(s) 79, 95, 393, 480, 503
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 4 cut(s) 196, 288, 477, 573
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 153, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 230, 239
HpyF3I CTNAG 2 cut(s) 341, 463
Hsp92II CATG 1 cut(s) 558
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 221, 255, 271
Lsp1109I GCAGC 2 cut(s) 193, 565
LweI GCATC 3 cut(s) 55, 242, 508
MaeI CTAG 2 cut(s) 210, 537
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 4 cut(s) 42, 49, 110, 408
MfeI CAATTG 1 cut(s) 148
MluCI AATT 3 cut(s) 148, 182, 191
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 6 cut(s) 56, 285, 306, 441, 505, 570
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 4 cut(s) 227, 267, 570, 586
MslI CAYNNNNRTG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 405, 436
MunI CAATTG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 2 cut(s) 405, 436
MwoI GCNNNNNNNGC 3 cut(s) 65, 230, 239
NdeI CATATG 1 cut(s) 21
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 558
NlaIV GGNNCC 3 cut(s) 257, 273, 292
PctI GAATGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 317, 389
PkrI GCNGC 2 cut(s) 208, 580
Psp6I CCWGG 2 cut(s) 403, 434
PspGI CCWGG 2 cut(s) 403, 434
PspN4I GGNNCC 3 cut(s) 257, 273, 292
PspPI GGNCC 1 cut(s) 291
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 4 cut(s) 227, 267, 570, 586
SatI GCNGC 2 cut(s) 207, 579
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 405, 436
SetI ASST 7 cut(s) 48, 352, 373, 455, 469, 479, 528
SfaNI GCATC 3 cut(s) 55, 242, 508
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 11, 478
SmoI CTYRAG 2 cut(s) 11, 478
Sse9I AATT 3 cut(s) 148, 182, 191
SsiI CCGC 1 cut(s) 428
SspMI CTAG 2 cut(s) 210, 537
StyD4I CCNGG 2 cut(s) 403, 434
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 148, 182, 191
TfiI GAWTC 2 cut(s) 317, 389
Tru1I TTAA 4 cut(s) 227, 267, 570, 586
Tru9I TTAA 4 cut(s) 227, 267, 570, 586
TscAI CASTG 2 cut(s) 165, 257
TseI GCWGC 2 cut(s) 206, 578
TspDTI ATGAA 3 cut(s) 38, 215, 531
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 165, 257
VpaK11BI GGWCC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 210, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.