Rh2CG568000

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000438
Physical Location & Seq
Forward (+)
74877762 .. 74879730
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG568000.1

Sequence Viewer

Length: 843 bp
ATGTGCAAGCCACATATCATAGCCATTCCTTACCCAGCTCAAGGCCATGTAATTCCCTTGATGGAGTTATCACAGTGCTTAGTGAATGAAGGCTTCAAAGTCACATTTGTGAACACAGATTTTAACCACAAGCGAGTCATGAATTCCTTGGCAGCTGAAACTCATAAAAGGGATGATCAGATTTGTCTGGTTTCAATTCCGGATGGGTTAGAACCATGGGAGGACAGAAATGAGTTAGGGCAGCTATGTGAAGCAATACTTAGAGTCATGCCTGGGAAGTTGGAGGAGCTCATAGAGAAGATCAAGGAAGAAGAAGGTGATAAAGTTGCCTGTATCATTGCTGATGAGAGTAACGGATGGGCTCTGGAAGTAGCAGAGAAAATGCAAATAAAGAAAGTTGCCTTCTGGCCTGCGTCAGCTGCACTTTTGGCACTGGAGTTTTGTATCCCAAAATTAATTCAAGAAGGAATCATTGATGATGATGGATCCGCATTAAAAAGCCAGATGATCAACTTAGCACCAAACATGCCCACCATGAAAACTGAAGAGTTGGCTTGGTTAACCATTGGTGACATAACCACTCAGAAAATTGTATTCCAAGTTATGCTAAGTAGCAACAAGACTGTAAAATTGGCTGACTGGGTTGTGGGATTGAAGTTTGATAAGAATGAGAGTGGGATTATTCCTAAAGGAGAAATTAACAACAAGGTGGAACAACTTCTTGGTGACGAAAATTTCAGAGCCAGGGCTTCAAAACTCAAGGAAATGGCCATGACTAGTGTCAAAGAAGGTGGCCAGTCTAACAAGATATTTAAGAATTTCATTGAATGGATGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

280

Amino Acids

31.39

Weight (kDa)

5.24

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 489
AclWI GGATC 2 cut(s) 480, 493
AcoI YGGCCR 2 cut(s) 768, 793
AcsI RAATTY 3 cut(s) 142, 733, 817
AcuI CTGAAG 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 6 cut(s) 97, 195, 461, 655, 753, 827
AhlI ACTAGT 1 cut(s) 776
AjnI CCWGG 2 cut(s) 271, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 5 cut(s) 38, 155, 244, 289, 419
AluI AGCT 5 cut(s) 38, 155, 244, 289, 419
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 2 cut(s) 480, 493
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 4 cut(s) 43, 407, 768, 793
ApeKI GCWGC 3 cut(s) 152, 241, 419
ApoI RAATTY 3 cut(s) 142, 733, 817
AseI ATTAAT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 717
AsuHPI GGTGA 3 cut(s) 329, 581, 737
BalI TGGCCA 2 cut(s) 770, 795
BamHI GGATCC 1 cut(s) 485
BanII GRGCYC 2 cut(s) 291, 364
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 164, 253, 406
BccI CCATC 4 cut(s) 55, 197, 351, 476
BciT130I CCWGG 2 cut(s) 273, 745
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 2 cut(s) 175, 507
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 1 cut(s) 777
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 3 cut(s) 153, 242, 420
BlsI GCNGC 3 cut(s) 154, 243, 421
Bme1390I CCNGG 2 cut(s) 273, 745
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 2 cut(s) 273, 745
BmrI ACTGGG 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 649
BoxI GACNNNNGTC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 24, 743
BsaJI CCNNGG 4 cut(s) 147, 215, 272, 744
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 438, 644, 796
Bse3DI GCAATG 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 2 cut(s) 273, 745
BseDI CCNNGG 4 cut(s) 147, 215, 272, 744
BseGI GGATG 4 cut(s) 178, 208, 362, 837
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 3 cut(s) 438, 644, 796
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 164, 253, 406
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 4 cut(s) 45, 409, 770, 795
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 4 cut(s) 45, 409, 770, 795
Bsp1286I GDGCHC 2 cut(s) 291, 364
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 4 cut(s) 175, 300, 485, 507
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 1 cut(s) 489
BspANI GGCC 4 cut(s) 45, 409, 770, 795
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 199
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 487
BspPI GGATC 2 cut(s) 480, 493
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 3 cut(s) 438, 644, 796
BssECI CCNNGG 4 cut(s) 147, 215, 272, 744
BssMI GATC 4 cut(s) 175, 300, 485, 507
BssT1I CCWWGG 2 cut(s) 147, 215
Bst2UI CCWGG 2 cut(s) 273, 745
Bst4CI ACNGT 2 cut(s) 75, 625
Bst6I CTCTTC 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 8, 411
BstDEI CTNAG 5 cut(s) 79, 260, 514, 582, 608
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 4 cut(s) 178, 208, 362, 837
BstKTI GATC 4 cut(s) 178, 303, 488, 510
BstMBI GATC 4 cut(s) 175, 300, 485, 507
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 2 cut(s) 273, 745
BstNSI RCATGY 1 cut(s) 529
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 2 cut(s) 271, 743
BstV1I GCAGC 3 cut(s) 164, 253, 406
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 4 cut(s) 45, 409, 770, 795
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 4 cut(s) 178, 208, 362, 837
BtsIMutI CAGTG 2 cut(s) 80, 431
Cac8I GCNNGC 2 cut(s) 8, 411
CciI TCATGA 1 cut(s) 138
CseI GACGC 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 7 cut(s) 47, 139, 216, 268, 526, 535, 772
DdeI CTNAG 5 cut(s) 79, 260, 514, 582, 608
DpnI GATC 4 cut(s) 177, 302, 487, 509
DpnII GATC 4 cut(s) 175, 300, 485, 507
EaeI YGGCCR 2 cut(s) 768, 793
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 147, 215
Eco24I GRGCYC 2 cut(s) 291, 364
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 564
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 271, 743
EcoT14I CCWWGG 2 cut(s) 147, 215
EcoT38I GRGCYC 2 cut(s) 291, 364
ErhI CCWWGG 2 cut(s) 147, 215
FaeI CATG 7 cut(s) 50, 142, 219, 271, 529, 538, 775
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 7 cut(s) 46, 138, 215, 267, 525, 534, 771
FbaI TGATCA 2 cut(s) 175, 507
Fnu4HI GCNGC 3 cut(s) 153, 242, 420
FokI GGATG 3 cut(s) 185, 215, 369
FriOI GRGCYC 2 cut(s) 291, 364
Fsp4HI GCNGC 3 cut(s) 153, 242, 420
FspBI CTAG 1 cut(s) 777
GluI GCNGC 3 cut(s) 153, 242, 420
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 4 cut(s) 45, 409, 770, 795
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 402
Hin1II CATG 7 cut(s) 50, 142, 219, 271, 529, 538, 775
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 3 cut(s) 135, 264, 468
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 1 cut(s) 200
HphI GGTGA 3 cut(s) 329, 581, 737
Hpy166II GTNNAC 2 cut(s) 112, 561
Hpy188I TCNGA 3 cut(s) 180, 585, 740
Hpy188III TCNNGA 4 cut(s) 139, 200, 365, 461
Hpy8I GTNNAC 2 cut(s) 112, 561
HpyAV CCTTC 5 cut(s) 83, 308, 412, 458, 782
HpyCH4III ACNGT 2 cut(s) 75, 625
HpyCH4V TGCA 3 cut(s) 6, 385, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
HpyF3I CTNAG 5 cut(s) 79, 260, 514, 582, 608
Hsp92II CATG 7 cut(s) 50, 142, 219, 271, 529, 538, 775
Kpn2I TCCGGA 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 175, 507
KspAI GTTAAC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 175, 300, 485, 507
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 3 cut(s) 164, 253, 406
MaeI CTAG 1 cut(s) 777
MaeIII GTNAC 4 cut(s) 100, 350, 569, 725
MalI GATC 4 cut(s) 177, 302, 487, 509
MboI GATC 4 cut(s) 175, 300, 485, 507
MboII GAAGA 4 cut(s) 310, 320, 323, 557
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 291, 364
MlsI TGGCCA 2 cut(s) 770, 795
MluNI TGGCCA 2 cut(s) 770, 795
MlyI GAGTC 2 cut(s) 144, 273
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 214, 277
Mox20I TGGCCA 2 cut(s) 770, 795
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 717
MscI TGGCCA 2 cut(s) 770, 795
MseI TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 2 cut(s) 770, 795
MspA1I CMGCKG 2 cut(s) 155, 419
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 273, 745
MvaI CCWGG 2 cut(s) 273, 745
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NcoI CCATGG 1 cut(s) 215
NdeII GATC 4 cut(s) 175, 300, 485, 507
NlaIII CATG 7 cut(s) 50, 142, 219, 271, 529, 538, 775
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 3 cut(s) 100, 569, 725
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 3 cut(s) 154, 243, 421
PleI GAGTC 2 cut(s) 143, 272
PpsI GAGTC 2 cut(s) 143, 272
PshAI GACNNNNGTC 1 cut(s) 779
PshBI ATTAAT 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 271, 743
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 2 cut(s) 271, 743
PspN4I GGNNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 485
PvuII CAGCTG 2 cut(s) 155, 419
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
SatI GCNGC 3 cut(s) 153, 242, 420
Sau3AI GATC 4 cut(s) 175, 300, 485, 507
SchI GAGTC 2 cut(s) 144, 273
ScrFI CCNGG 2 cut(s) 273, 745
SduI GDGCHC 2 cut(s) 291, 364
SetI ASST 8 cut(s) 40, 157, 246, 291, 319, 421, 711, 793
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 39, 758
SmoI CTYRAG 2 cut(s) 39, 758
SpeI ACTAGT 1 cut(s) 776
SsiI CCGC 1 cut(s) 489
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 271, 743
StyI CCWWGG 2 cut(s) 147, 215
TaaI ACNGT 2 cut(s) 75, 625
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
Tru9I TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
TscAI CASTG 2 cut(s) 80, 438
TseFI GTSAC 3 cut(s) 100, 569, 725
TseI GCWGC 3 cut(s) 152, 241, 419
Tsp45I GTSAC 3 cut(s) 100, 569, 725
TspDTI ATGAA 4 cut(s) 102, 155, 551, 811
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 80, 438
VspI ATTAAT 1 cut(s) 455
XapI RAATTY 3 cut(s) 142, 733, 817
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.