Rorug02G0519700

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000438
Physical Location & Seq
Forward (+)
65190663 .. 65192654
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0519700.1

Sequence Viewer

Length: 849 bp
ATGGAAGAAAAAATGGAGGCCTCAACAACCAAGTTTCTTGTCCTGGCCACACATTGCCTTGCTCTTTTGGGGCCGTTTTATTTCAACTGGTCTGCGTTTTGGCTGGCTGTGGCACTCTATTTTGTTACAGGTGTGGGTATTACTCTGTCCTTCCATAGAAACCTCGCTCACCGCAGCTTTAAGCTTCCTAGATGGCTCGAGTACTCTTTTGCCTACTGCGCCGTCCTTTCGCTCCAGGGAAGTCCAATTGAATGGGTGAGCACACACAGAATCCTTCATCAGTTTACAGACACATGGGATGATCCTCACAGTCCCATTAAGGGATTTTGGTACAGTCATATTGGTTGGCTTGTTGACTATCATTCTCGGTTTGGAACCCCCGACACACTAGAATTCAAGAATGTCGGAGACTTAAAGAAGCAGTGGTACTATAGGTTTATTCACTGTACGTATCCTTATCACTCTGTAGCTCTTGGAATTCTGCTATATACTCGAGGAGGGCTACCATTCTTGGTTTGGGGAGTGGGTGTAAGGACTGTATTTTTACTCCACATTACCTTCTCAATAAACTCGATCTGCCACATATGGGGAAAGCAAGTATGGAATACTGGTGATTTGTCTAGAAACAACTGGTTGTTAGGTTTGCTAGCGCATGGCGAAGGTTGGCACAATAATCATCATGCCTTTGAGTACTCAGCTCGTCAAGGCTTGGAATGGTGGGAGATTGACACTACTTGGTATATAATACGCTTCCTTGAAGCCATTGGTTTGGCTACAGACGTAAAACTCCCAAATGAAGCTCATAAGAAAAGAAAGGCTTTTTGCAAGAATAGCAGTACTATCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

282

Amino Acids

32.92

Weight (kDa)

8.72

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 29 - 250 1.4e-15 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 296
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 392, 477
AfaI GTAC 6 cut(s) 203, 332, 428, 448, 692, 838
AfiI CCNNNNNNNGG 2 cut(s) 320, 586
AgsI TTSAA 4 cut(s) 85, 251, 397, 758
AjnI CCWGG 2 cut(s) 42, 234
AluBI AGCT 5 cut(s) 177, 184, 470, 698, 800
AluI AGCT 5 cut(s) 177, 184, 470, 698, 800
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 2 cut(s) 197, 492
AoxI GGCC 3 cut(s) 18, 45, 71
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 2 cut(s) 392, 477
AspLEI GCGC 2 cut(s) 221, 652
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 161, 268, 623
AsuNHI GCTAGC 1 cut(s) 646
AvaI CYCGRG 2 cut(s) 197, 492
BalI TGGCCA 1 cut(s) 47
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 186
BceAI ACGGC 2 cut(s) 58, 206
BciT130I CCWGG 2 cut(s) 44, 236
BciVI GTATCC 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 4 cut(s) 189, 389, 621, 647
BfmI CTRYAG 3 cut(s) 430, 465, 774
BfuI GTATCC 1 cut(s) 462
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmcAI AGTACT 3 cut(s) 203, 692, 838
Bme1390I CCNGG 2 cut(s) 44, 236
BmeT110I CYCGRG 2 cut(s) 197, 492
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 72, 376
BmrFI CCNGG 2 cut(s) 44, 236
BmtI GCTAGC 1 cut(s) 650
BpmI CTGGAG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 450
BsaJI CCNNGG 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 586
Bse1I ACTGG 4 cut(s) 92, 613, 635, 844
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 2 cut(s) 44, 236
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 320, 586
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 4 cut(s) 92, 613, 635, 844
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 186
BshFI GGCC 3 cut(s) 20, 47, 73
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 2 cut(s) 197, 492
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 320, 586
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 3 cut(s) 20, 47, 73
BsoBI CYCGRG 2 cut(s) 197, 492
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 301, 573
BspACI CCGC 1 cut(s) 172
BspANI GGCC 3 cut(s) 20, 47, 73
BspCNI CTCAG 1 cut(s) 707
BspLI GGNNCC 2 cut(s) 72, 376
BspOI GCTAGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 4 cut(s) 92, 613, 635, 844
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 2 cut(s) 301, 573
Bst2UI CCWGG 2 cut(s) 44, 236
Bst4CI ACNGT 4 cut(s) 311, 335, 446, 538
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 105, 648
BstDEI CTNAG 1 cut(s) 694
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 2 cut(s) 221, 652
BstKTI GATC 2 cut(s) 304, 576
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 2 cut(s) 301, 573
BstMWI GCNNNNNNNGC 2 cut(s) 218, 831
BstNI CCWGG 2 cut(s) 44, 236
BstSCI CCNGG 2 cut(s) 42, 234
BstSFI CTRYAG 3 cut(s) 430, 465, 774
BstSNI TACGTA 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 186
BstXI CCANNNNNNTGG 2 cut(s) 252, 769
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 3 cut(s) 20, 47, 73
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 2 cut(s) 428, 442
Cac8I GCNNGC 2 cut(s) 105, 648
CfoI GCGC 2 cut(s) 221, 652
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 6 cut(s) 202, 331, 427, 447, 691, 837
CviAII CATG 3 cut(s) 294, 653, 680
CviQI GTAC 6 cut(s) 202, 331, 427, 447, 691, 837
DdeI CTNAG 1 cut(s) 694
DpnI GATC 2 cut(s) 303, 575
DpnII GATC 2 cut(s) 301, 573
EaeI YGGCCR 1 cut(s) 45
Eco105I TACGTA 1 cut(s) 450
Eco147I AGGCCT 1 cut(s) 20
Eco88I CYCGRG 2 cut(s) 197, 492
EcoRI GAATTC 2 cut(s) 392, 477
EcoRII CCWGG 2 cut(s) 42, 234
FaeI CATG 3 cut(s) 297, 656, 683
FalI AAGNNNNNCTT 2 cut(s) 802, 834
FaqI GGGAC 1 cut(s) 297
FatI CATG 3 cut(s) 293, 652, 679
FauNDI CATATG 1 cut(s) 584
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 4 cut(s) 189, 389, 621, 647
GlaI GCGC 2 cut(s) 220, 651
GluI GCNGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 3 cut(s) 20, 47, 73
HhaI GCGC 2 cut(s) 221, 652
Hin1II CATG 3 cut(s) 297, 656, 683
Hin6I GCGC 2 cut(s) 219, 650
HinP1I GCGC 2 cut(s) 219, 650
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 270
HphI GGTGA 3 cut(s) 161, 268, 623
Hpy166II GTNNAC 2 cut(s) 285, 355
Hpy188I TCNGA 1 cut(s) 407
Hpy188III TCNNGA 2 cut(s) 397, 621
Hpy8I GTNNAC 2 cut(s) 285, 355
HpyAV CCTTC 4 cut(s) 160, 284, 568, 653
HpyCH4III ACNGT 4 cut(s) 311, 335, 446, 538
HpyCH4IV ACGT 2 cut(s) 449, 780
HpyCH4V TGCA 1 cut(s) 825
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 831
HpyF3I CTNAG 1 cut(s) 694
HpySE526I ACGT 2 cut(s) 449, 780
Hsp92II CATG 3 cut(s) 297, 656, 683
HspAI GCGC 2 cut(s) 219, 650
Kzo9I GATC 2 cut(s) 301, 573
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 9 cut(s) 29, 56, 73, 89, 114, 221, 248, 594, 616
Lsp1109I GCAGC 1 cut(s) 186
MaeI CTAG 4 cut(s) 189, 389, 621, 647
MaeII ACGT 2 cut(s) 449, 780
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 303, 575
MboI GATC 2 cut(s) 301, 573
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 263
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 3 cut(s) 246, 392, 477
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 6 cut(s) 10, 31, 173, 315, 488, 491
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 3 cut(s) 180, 318, 413
Msp20I TGGCCA 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 44, 236
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 2 cut(s) 44, 236
MwoI GCNNNNNNNGC 2 cut(s) 218, 831
NdeI CATATG 1 cut(s) 584
NdeII GATC 2 cut(s) 301, 573
NheI GCTAGC 1 cut(s) 646
NlaIII CATG 3 cut(s) 297, 656, 683
NlaIV GGNNCC 2 cut(s) 72, 376
PaeR7I CTCGAG 2 cut(s) 197, 492
PceI AGGCCT 1 cut(s) 20
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 42, 234
PspGI CCWGG 2 cut(s) 42, 234
PspN4I GGNNCC 2 cut(s) 72, 376
PspPI GGNCC 1 cut(s) 71
PspXI VCTCGAGB 2 cut(s) 197, 492
RsaI GTAC 6 cut(s) 203, 332, 428, 448, 692, 838
RsaNI GTAC 6 cut(s) 202, 331, 427, 447, 691, 837
SaqAI TTAA 3 cut(s) 180, 318, 413
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 301, 573
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 3 cut(s) 203, 692, 838
ScrFI CCNGG 2 cut(s) 44, 236
SduI GDGCHC 1 cut(s) 263
SfcI CTRYAG 3 cut(s) 430, 465, 774
Sfr274I CTCGAG 2 cut(s) 197, 492
SlaI CTCGAG 2 cut(s) 197, 492
SmlI CTYRAG 2 cut(s) 197, 492
SmoI CTYRAG 2 cut(s) 197, 492
SnaBI TACGTA 1 cut(s) 450
Sse9I AATT 3 cut(s) 246, 392, 477
SseBI AGGCCT 1 cut(s) 20
SsiI CCGC 1 cut(s) 172
SspMI CTAG 4 cut(s) 189, 389, 621, 647
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 42, 234
TaaI ACNGT 4 cut(s) 311, 335, 446, 538
TaiI ACGT 2 cut(s) 452, 783
TaqI TCGA 3 cut(s) 198, 493, 572
TasI AATT 3 cut(s) 246, 392, 477
TatI WGTACW 3 cut(s) 201, 690, 836
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 3 cut(s) 180, 318, 413
Tru9I TTAA 3 cut(s) 180, 318, 413
TscAI CASTG 2 cut(s) 428, 449
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 266, 810
TspRI CASTG 2 cut(s) 428, 449
XapI RAATTY 2 cut(s) 392, 477
XbaI TCTAGA 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
XhoI CTCGAG 2 cut(s) 197, 492
XspI CTAG 4 cut(s) 189, 389, 621, 647
ZrmI AGTACT 3 cut(s) 203, 692, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.