Rmu_sc0006218.1_g000018

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006218.1
OG0000438
Physical Location & Seq
Forward (+)
80417 .. 81274
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006218.1_g000018.1.cds

Sequence Viewer

Length: 858 bp
atgatcaacttagcaccaaacatgcccaccatgaaaactgaagagttggcttggttaacaattggtgacataaccactcagaaaattgtattccaagttatgctaagtagcaacaagactgtaaaattggctgactgggttgtatgcaactcagcattcgatctagaaccaggagcattcaccttggcaccacagattttgccaataggcccgcttttggcaagcaatcgccacgacaattcggcaggaaacttctggccaccagactcaacttgcttagaatggcttgatcaacaagctccttgttcagtcatctacgttgcttttggaagcttcacaatttttgatcaaacccagttccaagaattggctttggctctcgaactgtccaataggccattcctgtgggttgtgaggccagacatctgtgaaactactccctaccctgaaggatatgaagaaagagtagggtctaaagggttgatggtgggatgggccccacaacagaaggttctatcccatccttcaattgcttgcttcctaagccactgtggttggaactctaccttggaaggtctaagcaatggggttcctttcttgtgttggccatacttcgcggaccagttccttgatgagagttacatttgtaatgtttggaaggtgggattgaagtttgataagaatgagagtgggattattcctaaaggagaaattaacaacaaggtggaacaacttcttggtgacgaaaatttcagagccagggcttcaaaactcaaggaaatggccatgactagtgtcaaagaaggtggccggtctaacaagatatttaagaatttcattgaatggatgaagtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

285

Amino Acids

32.03

Weight (kDa)

5.11

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 1 cut(s) 617
AciI CCGC 2 cut(s) 212, 617
AcoI YGGCCR 4 cut(s) 257, 605, 783, 808
AcsI RAATTY 2 cut(s) 748, 832
AcuI CTGAAG 2 cut(s) 60, 468
AfiI CCNNNNNNNGG 2 cut(s) 217, 367
AgsI TTSAA 4 cut(s) 528, 670, 768, 842
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 2 cut(s) 169, 758
AjuI GAANNNNNNNTTGG 6 cut(s) 383, 415, 551, 583, 720, 752
AluBI AGCT 2 cut(s) 299, 333
AluI AGCT 2 cut(s) 299, 333
AoxI GGCC 8 cut(s) 208, 257, 395, 416, 495, 605, 783, 808
ApaI GGGCCC 1 cut(s) 499
ApoI RAATTY 2 cut(s) 748, 832
Asp700I GAANNNNTTC 1 cut(s) 732
AspS9I GGNCC 4 cut(s) 209, 495, 496, 619
AsuHPI GGTGA 3 cut(s) 77, 172, 752
AvaII GGWCC 1 cut(s) 619
BaeGI GKGCMC 1 cut(s) 499
BalI TGGCCA 3 cut(s) 259, 607, 785
BanI GGYRCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 499
BccI CCATC 3 cut(s) 478, 486, 528
BciT130I CCWGG 2 cut(s) 171, 760
BclI TGATCA 3 cut(s) 3, 289, 346
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 2 cut(s) 164, 792
Bme1390I CCNGG 2 cut(s) 171, 760
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 4 cut(s) 209, 495, 496, 619
BmiI GGNNCC 4 cut(s) 189, 497, 498, 591
BmrFI CCNGG 2 cut(s) 171, 760
BmrI ACTGGG 2 cut(s) 145, 349
BmuI ACTGGG 2 cut(s) 145, 349
BoxI GACNNNNGTC 1 cut(s) 794
Bpu10I CCTNAGC 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 3 cut(s) 183, 567, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 367
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 3 cut(s) 140, 355, 622
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 2 cut(s) 171, 760
BseDI CCNNGG 3 cut(s) 183, 567, 759
BseGI GGATG 3 cut(s) 497, 520, 852
BseLI CCNNNNNNNGG 2 cut(s) 217, 367
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 92, 165
BseNI ACTGG 3 cut(s) 140, 355, 622
BseSI GKGCMC 1 cut(s) 499
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 8 cut(s) 210, 259, 397, 418, 497, 607, 785, 810
BshNI GGYRCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 811
BslI CCNNNNNNNGG 2 cut(s) 217, 367
BsmI GAATGC 2 cut(s) 155, 176
BsnI GGCC 8 cut(s) 210, 259, 397, 418, 497, 607, 785, 810
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 4 cut(s) 3, 160, 289, 346
BspACI CCGC 2 cut(s) 212, 617
BspANI GGCC 8 cut(s) 210, 259, 397, 418, 497, 607, 785, 810
BspCNI CTCAG 2 cut(s) 91, 164
BspFNI CGCG 1 cut(s) 617
BspLI GGNNCC 4 cut(s) 189, 497, 498, 591
BspT107I GGYRCC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 810
BsrI ACTGG 3 cut(s) 140, 355, 622
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 3 cut(s) 183, 567, 759
BssMI GATC 4 cut(s) 3, 160, 289, 346
BssT1I CCWWGG 2 cut(s) 183, 567
Bst2UI CCWGG 2 cut(s) 171, 760
Bst4CI ACNGT 3 cut(s) 121, 387, 551
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 212, 223, 535
BstDEI CTNAG 7 cut(s) 10, 78, 104, 151, 277, 542, 578
BstF5I GGATG 3 cut(s) 497, 520, 852
BstFNI CGCG 1 cut(s) 617
BstKTI GATC 4 cut(s) 6, 163, 292, 349
BstMBI GATC 4 cut(s) 3, 160, 289, 346
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstNI CCWGG 2 cut(s) 171, 760
BstNSI RCATGY 1 cut(s) 25
BstPAI GACNNNNGTC 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 169, 758
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 617
BstXI CCANNNNNNTGG 1 cut(s) 405
BsuRI GGCC 8 cut(s) 210, 259, 397, 418, 497, 607, 785, 810
BtsCI GGATG 3 cut(s) 497, 520, 852
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 212, 223, 535
Cfr10I RCCGGY 1 cut(s) 810
Cfr13I GGNCC 4 cut(s) 209, 495, 496, 619
CspCI CAANNNNNGTGG 6 cut(s) 180, 215, 536, 571, 787, 822
CviAII CATG 3 cut(s) 22, 31, 787
DdeI CTNAG 7 cut(s) 10, 78, 104, 151, 277, 542, 578
DpnI GATC 4 cut(s) 5, 162, 291, 348
DpnII GATC 4 cut(s) 3, 160, 289, 346
EaeI YGGCCR 4 cut(s) 257, 605, 783, 808
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 183, 567
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 619
Eco57I CTGAAG 2 cut(s) 60, 468
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 169, 758
EcoT14I CCWWGG 2 cut(s) 183, 567
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 183, 567
FaeI CATG 3 cut(s) 25, 34, 790
FaiI YATR 9 cut(s) 23, 32, 71, 101, 145, 456, 610, 788, 856
FatI CATG 3 cut(s) 21, 30, 786
FauI CCCGC 1 cut(s) 219
FbaI TGATCA 3 cut(s) 3, 289, 346
FokI GGATG 2 cut(s) 504, 507
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 2 cut(s) 164, 792
HaeIII GGCC 8 cut(s) 210, 259, 397, 418, 497, 607, 785, 810
HapII CCGG 1 cut(s) 811
Hin1II CATG 3 cut(s) 25, 34, 790
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 1 cut(s) 266
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 1 cut(s) 811
HphI GGTGA 3 cut(s) 77, 172, 752
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 81, 755
Hpy188III TCNNGA 2 cut(s) 164, 380
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 6 cut(s) 443, 502, 534, 566, 652, 797
HpyCH4III ACNGT 3 cut(s) 121, 387, 551
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 7 cut(s) 10, 78, 104, 151, 277, 542, 578
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 3 cut(s) 25, 34, 790
Ksp22I TGATCA 3 cut(s) 3, 289, 346
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 4 cut(s) 3, 160, 289, 346
LmnI GCTCC 2 cut(s) 173, 304
MaeI CTAG 2 cut(s) 164, 792
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 65, 638, 740
MalI GATC 4 cut(s) 5, 162, 291, 348
MboI GATC 4 cut(s) 3, 160, 289, 346
MboII GAAGA 2 cut(s) 53, 470
MfeI CAATTG 2 cut(s) 60, 528
MhlI GDGCHC 1 cut(s) 499
MlsI TGGCCA 3 cut(s) 259, 607, 785
MluNI TGGCCA 3 cut(s) 259, 607, 785
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 1 cut(s) 408
Mox20I TGGCCA 3 cut(s) 259, 607, 785
MroXI GAANNNNTTC 1 cut(s) 732
MscI TGGCCA 3 cut(s) 259, 607, 785
MseI TTAA 3 cut(s) 56, 714, 828
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 3 cut(s) 259, 607, 785
MspI CCGG 1 cut(s) 811
MspR9I CCNGG 2 cut(s) 171, 760
MunI CAATTG 2 cut(s) 60, 528
Mva1269I GAATGC 2 cut(s) 155, 176
MvaI CCWGG 2 cut(s) 171, 760
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 543
NdeII GATC 4 cut(s) 3, 160, 289, 346
NlaIII CATG 3 cut(s) 25, 34, 790
NlaIV GGNNCC 4 cut(s) 189, 497, 498, 591
NmuCI GTSAC 2 cut(s) 65, 740
NspI RCATGY 1 cut(s) 25
PctI GAATGC 2 cut(s) 155, 176
PdmI GAANNNNTTC 1 cut(s) 732
PflMI CCANNNNNTGG 1 cut(s) 367
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 794
Psp6I CCWGG 2 cut(s) 169, 758
PspGI CCWGG 2 cut(s) 169, 758
PspN4I GGNNCC 4 cut(s) 189, 497, 498, 591
PspOMI GGGCCC 1 cut(s) 495
PspPI GGNCC 4 cut(s) 209, 495, 496, 619
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 3 cut(s) 56, 714, 828
Sau3AI GATC 4 cut(s) 3, 160, 289, 346
Sau96I GGNCC 4 cut(s) 209, 495, 496, 619
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 171, 760
SduI GDGCHC 1 cut(s) 499
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SpeI ACTAGT 1 cut(s) 791
SsiI CCGC 2 cut(s) 212, 617
SspMI CTAG 2 cut(s) 164, 792
StyD4I CCNGG 2 cut(s) 169, 758
StyI CCWWGG 2 cut(s) 183, 567
TaaI ACNGT 3 cut(s) 121, 387, 551
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 159, 381
Tru1I TTAA 3 cut(s) 56, 714, 828
Tru9I TTAA 3 cut(s) 56, 714, 828
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 2 cut(s) 65, 740
Tsp45I GTSAC 2 cut(s) 65, 740
TspDTI ATGAA 3 cut(s) 47, 471, 826
TspRI CASTG 1 cut(s) 554
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 2 cut(s) 748, 832
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 164, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.