FvH4_7g00380

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
1005292 .. 1012950
7659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00380.t3

Sequence Viewer

Length: 2643 bp
ATGAATTCTCAGCTGCAGCAGGAATCCCACTTGGATGAGCTGATCAGTCACCATGAAAATTCCTCCCTTGCCAACATCCTTCGCCACCGCCGCGGTGTCCGCCCTTGCAAAGTTTCCAATGATGCACTCGAAGCAGCAGATGATCAAGCTGCAGCACTAACCATAAAAGCTGTAGTTACGGTCATAGCAACAGCCGGAGGCTTCCTATCAACTATAGGGATCACTCATCACCTCGAGGACTTGCTAGGCAAAACCTTTCTGCTGGAGCTAGTTAGCGCCGAGCTTGATCCCAAGACGGGAACAGAGAAGGAAGCGATCAAGGGGCACCTTCGCAGAGTGAGAAGAGACGTCAAGGAGGTGATATATGAGAGTGAGTTGAGCGTCCCAGCAGGTTTCGGAGAAATCGGAGCTGTTCAGATTGAGAATGAGCACCGCAAGGAGATTTACATCCAGACCATCGACCTCACCGGCTTCCCAAATGGCTCCACTCTCACCATTCCCTGTAAATCGTGGGTTCATTCCAAGCATAATAATACACAGAAGAGAGTTTTCTTCACCAACAAGTCTTACTTGCCATCAGAGACTCCAAGTGGGTTGAAGAGGCTTAGAGAAATGGAGCTGAGAATTTTGCGAGGGAATGGTGAGGGCGAAAGGAAAACGTCGGACAGGATTTACGATTATGATCTATATAATGATCTTGGAGATCCAGATAACAATCTGATTAGGCCAGTCCTCGGCGGCAAAGAACATCCATACCCTAGGCGCTGCAGAACAGGACGCCCGCACAGTGAAACTGACCCATTATCTGAAGAAACAAGCTCCAGTGTGTATATACCAAGAGATGAAGCGTTTTCAGAGGAGAAACATCTCACTTTCAACGGAAAGACACTAAAATCTGTGCTGCACGCTTTGCTCCCTCAGCTTGAGATAACACTCATTGATCGGGACTTGGGATTCCCACTCTTCAAAGAAATAGATTCATTGTTTAATGAAGGCATCGCGTTGCCTAAGCCCCAAACAATTGGGTTTCTTAGGTCCGTCATTCCAAAGCTAGTGAATGCTGTTAGTGATGGGAAGAAAGATATTTTGCTCTTTGAGACCCCTGCAATGCTTGATCGTGATAAATTTTCCTGGTTCAGAGACGAGGAATTTTCACGGCAAACTCTAGCTGGTCTTAATCCATTTAGTATTGAGCTAGTTAAGGAATGGCCACTGAAAAGTAAGCTTGACCCTGAGATTTACGGCTCACCTGAATCATTGATCACAACTGAACTGGTGGAGAAAGAGATTAAGGGATTCATGACTGTAAATGAGGCCTTGGACAAAAAGAAGCTGTTTCTCTTGGATTATCATGACCTGCTCATTCCTCTAGTTAAAAAAGTGAGAGAAATTGAAGGGACTACGTTGTATGGTTCTCGGACACTATTTTTTCTCACTGAGAATGGATGTCTAAGGCCTATTGCTATTGAACTTACTCGACCACCAATTGGTGACAAGCCACAATGGAAGCAAGTCTTCATCCCCTGCTGGGATGCCACAGGTGTCTGGCTATGGAGGCTTGCTAAAGCTCATGTTTGTGCTCATGACTCTGGCTATCATGAGCTTGTGATCCACTGGCTGCGGACTCATTGTGTGACAGAGCCATACATAATTGCCGCTAATCGGCAAATGAGTGCTATGCATCCCATCTATAGACTTCTTCATCCTCATTTTCGATATACAATGGCAATCAATGCTCTGTCTCGAGGAAGCCTCATTAATGCAGGCGGAGTCATTGAGAGTTGCTTTTCACCGGGGAAGTACTCTATGGAGGTCAGTTCTGCTGCCTATGAAAAGCTCTGGCGCTTTGACATGGAAGCTTTACCCGCAGATCTAGTAAGAAGAGGAATGGCAGTTGAGGATCCTACAGCTGAGCATGGTCTGAAGCTAACAATAGAAGACTACCCGTTTGCAAACGACGGTCTTATTCTTTGGGATGCCATTAAGAAGTGGGTGAGCGACTATGTAAATCACTACTACCAAGACGCTAGTGTTGTTGAATGTGATGAGGAGCTTCAAGGTTGGTGGACAGAAGTTAGAACTAAAGGCCATGAAGACAAAAAAGATGAGCCATGGTGGCCTGTTCTGAAAACCCCAGAAGATCTCGTTCATGTTTTGACAACAATAATTTGGGTGACATCCGGTCATCATGCAGCAGTGAACTTTGGTCAGTACACATATGCTGGATACTTCCCGAACAGACCTGCAATAGCTCGAACAAACATGCCATGTGAAGATCCATCCGATGAAGATTACAAAACTTTTCTGGCAAAACCTGAAACAGCACTGCTAAACTGCTTTCCCTCAAAGATTCAAGCAACAACTGTGATGGCTGTGATTGATGTGTTATCGGAACATTCACCTGATGAGGAGTATATTGGTGAGATTTTGGAGCCATCTTGGACTGAAAATCCTATTATAATGGATGGTTTTCAGCGCTTTAAAGACAGTTTAAAAGAGCTAGAAAGAACCATCAATGAGAGGAACCTCAATAAAAAACTAAGAAACAGAGTTGGAGCAGGGGTTGTTCCATACGAGCTGCTGAAACCATTCTCAAAACCTGGGGTCACTGGAATGGGAGTCCCTAATAGCATCTCCATCTAA

Protein Analysis

881

Amino Acids

99.89

Weight (kDa)

5.8

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 115 - 185 1.2e-07 PLAT/LH2 domain
Lipoxygenase PF00305 198 - 630 2.6e-195 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2459
AatII GACGTC 1 cut(s) 351
AbsI CCTCGAGG 1 cut(s) 233
Acc36I ACCTGC 3 cut(s) 380, 1365, 2251
AccB1I GGYRCC 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 1487
AccII CGCG 2 cut(s) 93, 1001
AclWI GGATC 7 cut(s) 227, 281, 698, 1603, 1895, 1908, 2270
AcoI YGGCCR 1 cut(s) 1208
AcsI RAATTY 5 cut(s) 4, 58, 624, 1124, 1148
AcuI CTGAAG 2 cut(s) 828, 1943
AcyI GRCGYC 2 cut(s) 348, 778
AfaI GTAC 2 cut(s) 1802, 2213
AfeI AGCGCT 1 cut(s) 2477
AfiI CCNNNNNNNGG 5 cut(s) 296, 734, 1487, 1528, 1662
AgsI TTSAA 8 cut(s) 598, 877, 967, 1394, 1469, 2039, 2057, 2354
AhdI GACNNNNNGTC 1 cut(s) 2181
AjnI CCWGG 2 cut(s) 1130, 2599
Alw21I GWGCWC 2 cut(s) 432, 1582
Alw26I GTCTC 5 cut(s) 339, 575, 1091, 1134, 1746
AlwI GGATC 7 cut(s) 227, 281, 698, 1603, 1895, 1908, 2270
Ama87I CYCGRG 2 cut(s) 233, 1743
Aor51HI AGCGCT 1 cut(s) 2477
AoxI GGCC 6 cut(s) 725, 1208, 1314, 1454, 2086, 2117
ApoI RAATTY 5 cut(s) 4, 58, 624, 1124, 1148
ArsI GACNNNNNNTTYG 2 cut(s) 1931, 1963
AseI ATTAAT 1 cut(s) 1758
Asp700I GAANNNNTTC 1 cut(s) 2588
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 4 cut(s) 278, 765, 1845, 2478
AspS9I GGNCC 1 cut(s) 1035
AsuC2I CCSGG 1 cut(s) 1794
AvaI CYCGRG 2 cut(s) 233, 1743
AvaII GGWCC 1 cut(s) 1035
AvrII CCTAGG 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 327
BalI TGGCCA 1 cut(s) 1210
BamHI GGATCC 1 cut(s) 1900
BanI GGYRCC 1 cut(s) 324
BbsI GAAGAC 3 cut(s) 1507, 1944, 2100
Bbv12I GWGCWC 2 cut(s) 432, 1582
BbvCI CCTCAGC 1 cut(s) 918
BccI CCATC 9 cut(s) 464, 583, 1064, 1694, 2287, 2362, 2443, 2459, 2519
BceAI ACGGC 2 cut(s) 1172, 1258
BciT130I CCWGG 2 cut(s) 1132, 2601
BciVI GTATCC 1 cut(s) 2219
BclI TGATCA 3 cut(s) 42, 142, 1260
BcnI CCSGG 1 cut(s) 1794
BcoDI GTCTC 5 cut(s) 339, 575, 1091, 1134, 1746
BfmI CTRYAG 7 cut(s) 14, 150, 171, 213, 766, 1690, 1905
BfoI RGCGCY 4 cut(s) 279, 766, 1846, 2479
BfuAI ACCTGC 3 cut(s) 380, 1365, 2251
BfuI GTATCC 1 cut(s) 2219
BglI GCCNNNNNGGC 1 cut(s) 2116
BglII AGATCT 2 cut(s) 1870, 2140
BlnI CCTAGG 1 cut(s) 758
BlpI GCTNAGC 1 cut(s) 1911
BmcAI AGTACT 1 cut(s) 1802
Bme1390I CCNGG 3 cut(s) 1132, 1794, 2601
Bme18I GGWCC 1 cut(s) 1035
BmeRI GACNNNNNGTC 1 cut(s) 2181
BmeT110I CYCGRG 2 cut(s) 233, 1743
BmgT120I GGNCC 1 cut(s) 1035
BmiI GGNNCC 5 cut(s) 326, 484, 1902, 2433, 2525
BmrFI CCNGG 3 cut(s) 1132, 1794, 2601
BmsI GCATC 5 cut(s) 112, 1005, 1522, 1690, 1966
BpiI GAAGAC 3 cut(s) 1507, 1944, 2100
BplI GAGNNNNNCTC 2 cut(s) 1737, 1769
BpmI CTGGAG 2 cut(s) 284, 805
Bpu10I CCTNAGC 2 cut(s) 918, 1008
Bpu1102I GCTNAGC 1 cut(s) 1911
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 1794
BsaBI GATNNNNATC 3 cut(s) 446, 681, 714
BsaHI GRCGYC 2 cut(s) 348, 778
BsaI GGTCTC 1 cut(s) 1091
BsaJI CCNNGG 7 cut(s) 91, 733, 758, 1317, 1793, 2111, 2600
BsaWI WCCGGW 1 cut(s) 2180
BsaXI ACNNNNNCTCC 2 cut(s) 2547, 2577
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 734, 1487, 1528, 1662
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 5 cut(s) 728, 822, 1278, 1619, 2614
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 3 cut(s) 446, 681, 714
BseBI CCWGG 2 cut(s) 1132, 2601
BseDI CCNNGG 7 cut(s) 91, 733, 758, 1317, 1793, 2111, 2600
BseJI GATNNNNATC 3 cut(s) 446, 681, 714
BseLI CCNNNNNNNGG 5 cut(s) 296, 734, 1487, 1528, 1662
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 6 cut(s) 23, 611, 932, 1224, 1428, 1902
BseNI ACTGG 5 cut(s) 728, 822, 1278, 1619, 2614
BseRI GAGGAG 3 cut(s) 872, 2063, 2423
BseSI GKGCMC 1 cut(s) 327
BseYI CCCAGC 2 cut(s) 385, 1527
BsgI GTGCAG 1 cut(s) 887
Bsh1236I CGCG 2 cut(s) 93, 1001
BshFI GGCC 6 cut(s) 727, 1210, 1316, 1456, 2088, 2119
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 432, 1582
BsiHKCI CYCGRG 2 cut(s) 233, 1743
BsiSI CCGG 4 cut(s) 195, 468, 1793, 2181
BslFI GGGAC 4 cut(s) 368, 959, 1411, 2606
BslI CCNNNNNNNGG 5 cut(s) 296, 734, 1487, 1528, 1662
BsmAI GTCTC 5 cut(s) 339, 575, 1091, 1134, 1746
BsmBI CGTCTC 2 cut(s) 339, 1134
BsmFI GGGAC 4 cut(s) 368, 959, 1411, 2606
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 6 cut(s) 727, 1210, 1316, 1456, 2088, 2119
Bso31I GGTCTC 1 cut(s) 1091
BsoBI CYCGRG 2 cut(s) 233, 1743
Bsp1286I GDGCHC 3 cut(s) 327, 432, 1582
Bsp1720I GCTNAGC 1 cut(s) 1911
Bsp19I CCATGG 1 cut(s) 2111
BspANI GGCC 6 cut(s) 727, 1210, 1316, 1456, 2088, 2119
BspCNI CTCAG 6 cut(s) 22, 612, 931, 1225, 1429, 1903
BspFNI CGCG 2 cut(s) 93, 1001
BspHI TCATGA 4 cut(s) 1299, 1351, 1582, 1597
BspLI GGNNCC 5 cut(s) 326, 484, 1902, 2433, 2525
BspMAI CTGCAG 3 cut(s) 18, 154, 770
BspMI ACCTGC 3 cut(s) 380, 1365, 2251
BspPI GGATC 7 cut(s) 227, 281, 698, 1603, 1895, 1908, 2270
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 1113
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 5 cut(s) 728, 822, 1278, 1619, 2614
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 7 cut(s) 91, 733, 758, 1317, 1793, 2111, 2600
BssNI GRCGYC 2 cut(s) 348, 778
BssT1I CCWWGG 3 cut(s) 758, 1317, 2111
Bst2UI CCWGG 2 cut(s) 1132, 2601
Bst4CI ACNGT 6 cut(s) 181, 788, 1306, 1961, 2365, 2489
Bst6I CTCTTC 5 cut(s) 337, 536, 593, 968, 1876
BstACI GRCGYC 2 cut(s) 348, 778
BstAPI GCANNNNNTGC 2 cut(s) 910, 1733
BstC8I GCNNGC 4 cut(s) 782, 906, 1560, 1765
BstDSI CCRYGG 2 cut(s) 91, 2111
BstFNI CGCG 2 cut(s) 93, 1001
BstH2I RGCGCY 4 cut(s) 279, 766, 1846, 2479
BstHHI GCGC 4 cut(s) 278, 765, 1845, 2478
BstMAI GTCTC 5 cut(s) 339, 575, 1091, 1134, 1746
BstMWI GCNNNNNNNGC 9 cut(s) 90, 99, 131, 910, 919, 1555, 1733, 1865, 2116
BstNI CCWGG 2 cut(s) 1132, 2601
BstNSI RCATGY 1 cut(s) 2266
BstSCI CCNGG 3 cut(s) 1130, 1792, 2599
BstSFI CTRYAG 7 cut(s) 14, 150, 171, 213, 766, 1690, 1905
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 2 cut(s) 93, 1001
BstV2I GAAGAC 3 cut(s) 1507, 1944, 2100
BstX2I RGATCY 5 cut(s) 703, 1870, 1900, 2140, 2275
BstXI CCANNNNNNTGG 1 cut(s) 1022
BstYI RGATCY 5 cut(s) 703, 1870, 1900, 2140, 2275
BsuI GTATCC 1 cut(s) 2219
BsuRI GGCC 6 cut(s) 727, 1210, 1316, 1456, 2088, 2119
BtgI CCRYGG 2 cut(s) 91, 2111
BtgZI GCGATG 1 cut(s) 982
BtsI GCAGTG 2 cut(s) 2202, 2324
BtsIMutI CAGTG 8 cut(s) 793, 829, 1211, 1434, 1612, 2202, 2324, 2607
BveI ACCTGC 3 cut(s) 380, 1365, 2251
Cac8I GCNNGC 4 cut(s) 782, 906, 1560, 1765
CciI TCATGA 4 cut(s) 1299, 1351, 1582, 1597
CfoI GCGC 4 cut(s) 278, 765, 1845, 2478
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 1035
Cfr42I CCGCGG 1 cut(s) 94
CseI GACGC 3 cut(s) 370, 786, 2033
Csp6I GTAC 2 cut(s) 1801, 2212
CspCI CAANNNNNGTGG 2 cut(s) 2045, 2080
CviQI GTAC 2 cut(s) 1801, 2212
DraI TTTAAA 2 cut(s) 2482, 2493
DriI GACNNNNNGTC 1 cut(s) 2181
EaeI YGGCCR 1 cut(s) 1208
Eam1104I CTCTTC 5 cut(s) 337, 536, 593, 968, 1876
Eam1105I GACNNNNNGTC 1 cut(s) 2181
EarI CTCTTC 5 cut(s) 337, 536, 593, 968, 1876
EciI GGCGGA 2 cut(s) 89, 1782
Eco130I CCWWGG 3 cut(s) 758, 1317, 2111
Eco147I AGGCCT 2 cut(s) 1316, 1456
Eco31I GGTCTC 1 cut(s) 1091
Eco47I GGWCC 1 cut(s) 1035
Eco47III AGCGCT 1 cut(s) 2477
Eco57I CTGAAG 2 cut(s) 828, 1943
Eco88I CYCGRG 2 cut(s) 233, 1743
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 1130, 2599
EcoT14I CCWWGG 3 cut(s) 758, 1317, 2111
EcoT22I ATGCAT 1 cut(s) 1683
ErhI CCWWGG 3 cut(s) 758, 1317, 2111
Esp3I CGTCTC 2 cut(s) 339, 1134
FalI AAGNNNNNCTT 4 cut(s) 554, 586, 1499, 1531
FaqI GGGAC 4 cut(s) 368, 959, 1411, 2606
FauI CCCGC 2 cut(s) 789, 1873
FauNDI CATATG 1 cut(s) 2218
FbaI TGATCA 3 cut(s) 42, 142, 1260
GlaI GCGC 4 cut(s) 277, 764, 1844, 2477
GsaI CCCAGC 2 cut(s) 389, 1531
GsuI CTGGAG 2 cut(s) 284, 805
HaeII RGCGCY 4 cut(s) 279, 766, 1846, 2479
HaeIII GGCC 6 cut(s) 727, 1210, 1316, 1456, 2088, 2119
HapII CCGG 4 cut(s) 195, 468, 1793, 2181
HgaI GACGC 3 cut(s) 370, 786, 2033
HhaI GCGC 4 cut(s) 278, 765, 1845, 2478
Hin1I GRCGYC 2 cut(s) 348, 778
Hin6I GCGC 4 cut(s) 276, 763, 1843, 2476
HinP1I GCGC 4 cut(s) 276, 763, 1843, 2476
HindIII AAGCTT 2 cut(s) 1223, 1857
HpaII CCGG 4 cut(s) 195, 468, 1793, 2181
Hpy166II GTNNAC 3 cut(s) 2067, 2200, 2214
Hpy8I GTNNAC 3 cut(s) 2067, 2200, 2214
Hpy99I CGWCG 2 cut(s) 664, 1961
HpyAV CCTTC 5 cut(s) 89, 301, 338, 986, 1388
HpyCH4III ACNGT 6 cut(s) 181, 788, 1306, 1961, 2365, 2489
HpyCH4IV ACGT 3 cut(s) 348, 659, 1403
HpyF10VI GCNNNNNNNGC 9 cut(s) 90, 99, 131, 910, 919, 1555, 1733, 1865, 2116
HpySE526I ACGT 3 cut(s) 348, 659, 1403
Hsp92I GRCGYC 2 cut(s) 348, 778
HspAI GCGC 4 cut(s) 276, 763, 1843, 2476
Ksp22I TGATCA 3 cut(s) 42, 142, 1260
KspI CCGCGG 1 cut(s) 94
LmnI GCTCC 9 cut(s) 265, 407, 488, 616, 824, 918, 2050, 2431, 2555
LweI GCATC 5 cut(s) 112, 1005, 1522, 1690, 1966
MaeII ACGT 3 cut(s) 348, 659, 1403
MaeIII GTNAC 6 cut(s) 47, 175, 1490, 1633, 2173, 2605
MfeI CAATTG 2 cut(s) 1020, 1485
MflI RGATCY 5 cut(s) 703, 1870, 1900, 2140, 2275
MhlI GDGCHC 3 cut(s) 327, 432, 1582
MlsI TGGCCA 1 cut(s) 1210
MluNI TGGCCA 1 cut(s) 1210
MlyI GAGTC 5 cut(s) 577, 1580, 1618, 1779, 2628
MmeI TCCRAC 2 cut(s) 642, 2533
Mox20I TGGCCA 1 cut(s) 1210
Mph1103I ATGCAT 1 cut(s) 1683
MroXI GAANNNNTTC 1 cut(s) 2588
MscI TGGCCA 1 cut(s) 1210
MseI TTAA 9 cut(s) 987, 1176, 1200, 1290, 1374, 1758, 1983, 2481, 2492
MslI CAYNNNNRTG 3 cut(s) 33, 1575, 2612
Msp20I TGGCCA 1 cut(s) 1210
MspA1I CMGCKG 3 cut(s) 13, 93, 1910
MspI CCGG 4 cut(s) 195, 468, 1793, 2181
MspR9I CCNGG 3 cut(s) 1132, 1794, 2601
MunI CAATTG 2 cut(s) 1020, 1485
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 2 cut(s) 1132, 2601
MvnI CGCG 2 cut(s) 93, 1001
MwoI GCNNNNNNNGC 9 cut(s) 90, 99, 131, 910, 919, 1555, 1733, 1865, 2116
NciI CCSGG 1 cut(s) 1794
NcoI CCATGG 1 cut(s) 2111
NdeI CATATG 1 cut(s) 2218
NlaIV GGNNCC 5 cut(s) 326, 484, 1902, 2433, 2525
NmeAIII GCCGAG 2 cut(s) 304, 714
NmuCI GTSAC 5 cut(s) 47, 1490, 1633, 2173, 2605
NsiI ATGCAT 1 cut(s) 1683
NspI RCATGY 1 cut(s) 2266
PaeR7I CTCGAG 2 cut(s) 233, 1743
PagI TCATGA 4 cut(s) 1299, 1351, 1582, 1597
PceI AGGCCT 2 cut(s) 1316, 1456
PctI GAATGC 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 2588
PfeI GAWTC 6 cut(s) 23, 954, 977, 1253, 1296, 2350
PflMI CCANNNNNTGG 1 cut(s) 1487
PleI GAGTC 5 cut(s) 577, 1580, 1618, 1778, 2627
PpsI GAGTC 5 cut(s) 577, 1580, 1618, 1778, 2627
PshBI ATTAAT 1 cut(s) 1758
PsiI TTATAA 1 cut(s) 2459
Psp6I CCWGG 2 cut(s) 1130, 2599
PspFI CCCAGC 2 cut(s) 385, 1527
PspGI CCWGG 2 cut(s) 1130, 2599
PspN4I GGNNCC 5 cut(s) 326, 484, 1902, 2433, 2525
PspPI GGNCC 1 cut(s) 1035
PspXI VCTCGAGB 1 cut(s) 233
PstI CTGCAG 3 cut(s) 18, 154, 770
PsuI RGATCY 5 cut(s) 703, 1870, 1900, 2140, 2275
PvuII CAGCTG 2 cut(s) 13, 1910
RsaI GTAC 2 cut(s) 1802, 2213
RsaNI GTAC 2 cut(s) 1801, 2212
RseI CAYNNNNRTG 3 cut(s) 33, 1575, 2612
SacII CCGCGG 1 cut(s) 94
SaqAI TTAA 9 cut(s) 987, 1176, 1200, 1290, 1374, 1758, 1983, 2481, 2492
Sau96I GGNCC 1 cut(s) 1035
ScaI AGTACT 1 cut(s) 1802
SchI GAGTC 5 cut(s) 577, 1580, 1618, 1779, 2628
ScrFI CCNGG 3 cut(s) 1132, 1794, 2601
SduI GDGCHC 3 cut(s) 327, 432, 1582
SfaNI GCATC 5 cut(s) 112, 1005, 1522, 1690, 1966
SfcI CTRYAG 7 cut(s) 14, 150, 171, 213, 766, 1690, 1905
Sfr274I CTCGAG 2 cut(s) 233, 1743
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SinI GGWCC 1 cut(s) 1035
SlaI CTCGAG 2 cut(s) 233, 1743
SmiMI CAYNNNNRTG 3 cut(s) 33, 1575, 2612
SmlI CTYRAG 3 cut(s) 233, 923, 1743
SmoI CTYRAG 3 cut(s) 233, 923, 1743
SseBI AGGCCT 2 cut(s) 1316, 1456
StuI AGGCCT 2 cut(s) 1316, 1456
StyD4I CCNGG 3 cut(s) 1130, 1792, 2599
StyI CCWWGG 3 cut(s) 758, 1317, 2111
TaaI ACNGT 6 cut(s) 181, 788, 1306, 1961, 2365, 2489
TaiI ACGT 3 cut(s) 351, 662, 1406
TaqI TCGA 7 cut(s) 129, 234, 459, 1477, 1714, 1744, 2254
TatI WGTACW 2 cut(s) 1800, 2211
TauI GCSGC 3 cut(s) 93, 741, 1658
TfiI GAWTC 6 cut(s) 23, 954, 977, 1253, 1296, 2350
Tru1I TTAA 9 cut(s) 987, 1176, 1200, 1290, 1374, 1758, 1983, 2481, 2492
Tru9I TTAA 9 cut(s) 987, 1176, 1200, 1290, 1374, 1758, 1983, 2481, 2492
TscAI CASTG 8 cut(s) 793, 829, 1218, 1441, 1619, 2202, 2331, 2614
TseFI GTSAC 5 cut(s) 47, 1490, 1633, 2173, 2605
Tsp45I GTSAC 5 cut(s) 47, 1490, 1633, 2173, 2605
TspGWI ACGGA 2 cut(s) 894, 1027
TspRI CASTG 8 cut(s) 793, 829, 1218, 1441, 1619, 2202, 2331, 2614
Van91I CCANNNNNTGG 1 cut(s) 1487
VpaK11BI GGWCC 1 cut(s) 1035
VspI ATTAAT 1 cut(s) 1758
XapI RAATTY 5 cut(s) 4, 58, 624, 1124, 1148
XceI RCATGY 1 cut(s) 2266
XhoI CTCGAG 2 cut(s) 233, 1743
XmaJI CCTAGG 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 2588
ZraI GACGTC 1 cut(s) 349
ZrmI AGTACT 1 cut(s) 1802
Zsp2I ATGCAT 1 cut(s) 1683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.