MD07G1003900.v1.1

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
404604 .. 412673
8070 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1003900.v1.1.491

Sequence Viewer

Length: 2763 bp
ATGACTTCTCAGCTTTATGCTCCATCCTTCTCTCTCTTACCAAAATCGTCCATTAACCCTAATCATCTGATTAAGGATGGTAGCCCCTCCCTGATCAGCATCGTTCCGCGCCACCATGTCCATCAAAATCGTAAGAAGAAAAAATCCTCCTCCTTGGTGATCCGTGCCACTTCTGGTGAGCTCAAATCATCACCTGCAGCAGTGTCCACCGTTACTTCAACGGAGAATCAGGCGTTTACGGTAAAGGCTTTGGTGACGGTGACGGTAACAGCTGGAGGGTCCAGCATACGCTTGAATCGTCCCCCCGATGACAATATCGACTTGCTTCGAAAAACCTTGCTTTTGGAGCTTGTTGGCGCCGAGCTTGACCCCAAGACGGGGTTGGAGAAGGAAACAGAGGGGTATGCGTACAATGTGAGCCACAAAGACGACGAGGTGGTGTATGAGGCTACTTTCACCATCCCAGCAGGGTTTGGAGACGTTGGAGCTGTTCAGATAGAGAATGAACACAACGAGGAGATCTTCATCAAGAGCATCGACCTCGATGGCTTCCCGAACGGCACTGTTAATATTCCCTGCAATTCCTGGGTTCATTCTCTGAAGAGAGTTTTTTTCACCAACAAGTCGTACATACCATCAGAGACGCCAAGTGGGTTGAAGAAGCTAAGAGAATCTGAGCTGCAGACTTTGCGAGGAGATGGGTTGGGCCAAAGAAAAACATCTGATAGGATCTACGATTATGATACTTATGACGACCTTGGCGATCCGGACCACGATGATGAACTGGCTAGGCCTGTCCTTGGCGGAAAAGATCACCCGTACCCGAGGCGCTGCAGAACTGGAAGACCACGCACTGAAAAGGATCCTTTGTCAGAACAAAGAAGCAGCAGTGAGTATGTACCAAGAAAACAAAGAATCAGCAGTGTGTATGTACCAAGAGATGAAGCGTTTTCGGAGGTGAAACAGCTGACATTTTTGACAAAGACCCTGAATTCTGTGCTACATATGTTGATCCCTTCGCTCGAGGCAGCAGGAGTTCTTGATCCAGCCCCAGAATTTACAGACTTCACAGCCATAGATTCACTGTTTAACGAAGGAGTCACGTTAGCTAAGCCAAAGGCTGGTGAGTCTTCCAAGACATTCTGGAAAGCGCTAGGCAAGACTATCCCATGGGTAGTCAAGGCTATTACAGGTGGCGAAAACAAACTTCTGGACTTTAAGACCCCTGAAATAATTGACCGTGATAAATTTGCTTGGTTTAGAGACGATGCATTTTCCAGGCAAACTCTAGCTGGTCTTAATCCATATAGTATTGAGCTAGTGACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCCCCTGAATCATTGATCACAACAGAAGTGGTTGAGAAGGCGATCAAAGGTTGTATGACTGTCAATGAGGCCTTGGAAGGAAAAAAGATGTTTATTTTGGATTACCATGACCTGCTCATGCCTTACGTGAACAAAGTAAGAGAGATTGAAGGTACCACACTGTATGGTTCTCGTACACTATTCTTCCTCACTGAAGATGGGACACTGAGGCCTATTGCCATTGAACTCACTCGACCGCCTGTTGGTAACAAGCCACAATGGAAGCAAGTCTTTACTCCAACCTGGGATGCCACCGGTCATTGGCTGTGGATTCTTGCTAAGGTCCACGTTCTTGCTCATGACTCTGCCTATCATCAGCTTGTCGTGCACTGGCTGAGGACTCATTGCAGTACAGAGCCATACATAATTGCAGCTAATCGACAATTAAGCGCAATGCATCCCATCTACAGACTTCTGCACCCTCATTTCCGGTATACAATGGCAATCAATGCTCTGGCTCGAGAAACCCTCATCAATGCAGGTGGAATCATTGAGAGCAGCTTTTCACTTGGAAAGTACTCCACGGAGTTCAGTTCTGTTGCTTACGACCAGCTTTGGAGATTTGACATGGAAGCTTTGCCAGAAGATCTCATTAGAAGGGGAATGGCAGTTGAGGATCCTACAGCTGAGCATGGCTTGAAGCTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTCTGTGGGATGCCATTAAGGAGTGGGTGAGTGCTTATGTGAACCACTACTATCCAGACCCAAATCTTATTGAGTCTGATACGGAGCTTCAAGGTTGGTGGACAGAAGTTAGAACCAAAGGTCATGCAGACAAGAAAGATGAGCCATGGTGGCCTGTTTTGAAAACTCCGGAAAGTCTGATTCACACTTTGACTACTATCATTTGGGTAACCGCTGGTCATCATGTAGCCGTGAACTTTGGTCAGTACATGTATGGTGGATATTTCCCTAACCGCCCTACAATTGCTCGAACCAACATGCCAACTGAAGATTCATCTGAATTTCTCCAGAAGTTCATGGAGAACCCAGAAATGGCTCTGCTGTTGTGCTTCCCCTCAAAGATTCAAGCAACAAAAGTGATGGCCGTGTTAGATTTACTATCGAATCATTCACCCGATGAGGAGTATATTGGTGAGAGTCTAAAGTCAGCTTGGGCTGAGAATCCTGTTATAAAGGCAGCATATGAGAAATTCAGTGGCAATTTGAAGAGGCTAGAAGGAATTATTGATGAGAGAAATAAAAATTTGAAACTGAAAAACAGAGTTGGAGCAGGCGTTGTTCCATATGAGCTTTTGAAGCCATTCTCAACCCACGGTGTCACAGGAATGGGAGTTCCAAACAGCATCTCCATCTAA

Protein Analysis

921

Amino Acids

103.51

Weight (kDa)

5.95

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 142 - 205 7.5e-08 PLAT/LH2 domain
Lipoxygenase PF00305 218 - 903 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2579
AarI CACCTGC 2 cut(s) 202, 1877
Acc36I ACCTGC 3 cut(s) 202, 1488, 1877
Acc65I GGTACC 1 cut(s) 1520
AccB1I GGYRCC 2 cut(s) 356, 1520
AccB7I CCANNNNNTGG 1 cut(s) 1121
AccI GTMKAC 1 cut(s) 1841
AccII CGCG 1 cut(s) 109
AccIII TCCGGA 2 cut(s) 766, 2257
AciI CCGC 5 cut(s) 107, 804, 1604, 2301, 2362
AclWI GGATC 9 cut(s) 154, 737, 758, 857, 870, 1006, 1037, 2018, 2031
AcoI YGGCCR 2 cut(s) 1331, 2490
AcsI RAATTY 6 cut(s) 991, 1055, 1247, 2408, 2597, 2650
AcuI CTGAAG 3 cut(s) 620, 1581, 2415
AcyI GRCGYC 2 cut(s) 357, 644
AfeI AGCGCT 1 cut(s) 1152
AfiI CCNNNNNNNGG 8 cut(s) 376, 377, 378, 800, 1121, 1610, 1668, 2440
AflIII ACRYGT 1 cut(s) 2337
AgeI ACCGGT 1 cut(s) 1661
AjnI CCWGG 3 cut(s) 584, 1277, 1649
AjuI GAANNNNNNNTTGG 2 cut(s) 2383, 2415
AloI GAACNNNNNNTCC 2 cut(s) 2724, 2756
Alw21I GWGCWC 2 cut(s) 183, 1737
Alw26I GTCTC 4 cut(s) 471, 635, 1257, 2090
Alw44I GTGCAC 1 cut(s) 1733
AlwI GGATC 9 cut(s) 154, 737, 758, 857, 870, 1006, 1037, 2018, 2031
Ama87I CYCGRG 4 cut(s) 823, 1022, 1355, 1866
Aor13HI TCCGGA 2 cut(s) 766, 2257
Aor51HI AGCGCT 1 cut(s) 1152
AoxI GGCC 8 cut(s) 706, 791, 1331, 1366, 1437, 1577, 2240, 2490
ApaLI GTGCAC 1 cut(s) 1733
ApeKI GCWGC 8 cut(s) 197, 679, 831, 885, 1028, 1778, 1905, 2585
ApoI RAATTY 6 cut(s) 991, 1055, 1247, 2408, 2597, 2650
ArsI GACNNNNNNTTYG 2 cut(s) 2054, 2086
AsiGI ACCGGT 1 cut(s) 1661
Asp700I GAANNNNTTC 1 cut(s) 2708
Asp718I GGTACC 1 cut(s) 1520
AspLEI GCGC 5 cut(s) 111, 359, 831, 1153, 1799
AspS9I GGNCC 5 cut(s) 279, 706, 769, 1367, 1690
AsuII TTCGAA 1 cut(s) 328
AvaI CYCGRG 4 cut(s) 823, 1022, 1355, 1866
AvaII GGWCC 3 cut(s) 279, 769, 1690
BaeGI GKGCMC 1 cut(s) 1737
BalI TGGCCA 1 cut(s) 1333
BamHI GGATCC 2 cut(s) 862, 2023
BanI GGYRCC 2 cut(s) 356, 1520
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 3 cut(s) 850, 1122, 2067
Bbv12I GWGCWC 2 cut(s) 183, 1737
BbvCI CCTCAGC 1 cut(s) 1742
BbvI GCAGC 8 cut(s) 209, 666, 818, 897, 1040, 1790, 1917, 2597
BceAI ACGGC 3 cut(s) 574, 2303, 2477
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 3 cut(s) 586, 1279, 1651
BclI TGATCA 2 cut(s) 93, 1383
BcoDI GTCTC 4 cut(s) 471, 635, 1257, 2090
BfaI CTAG 5 cut(s) 789, 1154, 1289, 1319, 2621
BfmI CTRYAG 5 cut(s) 195, 680, 832, 1813, 2028
BfoI RGCGCY 3 cut(s) 360, 832, 1154
BfuAI ACCTGC 3 cut(s) 202, 1488, 1877
BglI GCCNNNNNGGC 1 cut(s) 2239
BglII AGATCT 2 cut(s) 519, 1993
BisI GCNGC 8 cut(s) 198, 680, 832, 886, 1029, 1779, 1906, 2586
BlpI GCTNAGC 2 cut(s) 1110, 2034
BlsI GCNGC 8 cut(s) 199, 681, 833, 887, 1030, 1780, 1907, 2587
BmcAI AGTACT 1 cut(s) 1925
Bme1390I CCNGG 3 cut(s) 586, 1279, 1651
Bme18I GGWCC 3 cut(s) 279, 769, 1690
BmeT110I CYCGRG 4 cut(s) 823, 1022, 1355, 1866
BmgT120I GGNCC 5 cut(s) 279, 706, 769, 1367, 1690
BmiI GGNNCC 6 cut(s) 280, 358, 864, 1369, 1522, 2025
BmrFI CCNGG 3 cut(s) 586, 1279, 1651
BmsI GCATC 6 cut(s) 108, 543, 1258, 1645, 1813, 2089
BpiI GAAGAC 3 cut(s) 850, 1122, 2067
BplI GAGNNNNNCTC 2 cut(s) 1860, 1892
BpmI CTGGAG 2 cut(s) 294, 2399
Bpu10I CCTNAGC 2 cut(s) 1686, 1742
Bpu1102I GCTNAGC 2 cut(s) 1110, 2034
Bpu14I TTCGAA 1 cut(s) 328
BsaAI YACGTR 1 cut(s) 1495
BsaBI GATNNNNATC 2 cut(s) 98, 524
BsaHI GRCGYC 2 cut(s) 357, 644
BsaI GGTCTC 1 cut(s) 2090
BsaWI WCCGGW 4 cut(s) 766, 1661, 1836, 2257
BsaXI ACNNNNNCTCC 3 cut(s) 2667, 2697, 2738
Bsc4I CCNNNNNNNGG 8 cut(s) 376, 377, 378, 800, 1121, 1610, 1668, 2440
Bse118I RCCGGY 1 cut(s) 1661
Bse1I ACTGG 3 cut(s) 789, 844, 1742
Bse3DI GCAATG 2 cut(s) 1750, 1806
Bse8I GATNNNNATC 2 cut(s) 98, 524
BseAI TCCGGA 2 cut(s) 766, 2257
BseBI CCWGG 3 cut(s) 586, 1279, 1651
BseGI GGATG 6 cut(s) 23, 82, 459, 1660, 1804, 2104
BseJI GATNNNNATC 2 cut(s) 98, 524
BseLI CCNNNNNNNGG 8 cut(s) 376, 377, 378, 800, 1121, 1610, 1668, 2440
BseMI GCAATG 2 cut(s) 1750, 1806
BseMII CTCAG 6 cut(s) 23, 666, 1565, 1733, 2025, 2556
BseNI ACTGG 3 cut(s) 789, 844, 1742
BseRI GAGGAG 4 cut(s) 139, 530, 708, 2543
BseSI GKGCMC 1 cut(s) 1737
BseXI GCAGC 8 cut(s) 209, 666, 818, 897, 1040, 1790, 1917, 2597
BseYI CCCAGC 1 cut(s) 463
BsgI GTGCAG 1 cut(s) 1808
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 1604
BshFI GGCC 8 cut(s) 708, 793, 1333, 1368, 1439, 1579, 2242, 2492
BshNI GGYRCC 2 cut(s) 356, 1520
BshTI ACCGGT 1 cut(s) 1661
BsiEI CGRYCG 1 cut(s) 1604
BsiHKAI GWGCWC 2 cut(s) 183, 1737
BsiHKCI CYCGRG 4 cut(s) 823, 1022, 1355, 1866
BsiSI CCGG 4 cut(s) 767, 1662, 1837, 2258
BslFI GGGAC 2 cut(s) 285, 1582
BslI CCNNNNNNNGG 8 cut(s) 376, 377, 378, 800, 1121, 1610, 1668, 2440
BsmAI GTCTC 4 cut(s) 471, 635, 1257, 2090
BsmBI CGTCTC 3 cut(s) 471, 635, 1257
BsmFI GGGAC 2 cut(s) 285, 1582
BsnI GGCC 8 cut(s) 708, 793, 1333, 1368, 1439, 1579, 2242, 2492
Bso31I GGTCTC 1 cut(s) 2090
BsoBI CYCGRG 4 cut(s) 823, 1022, 1355, 1866
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 183, 1737
Bsp13I TCCGGA 2 cut(s) 766, 2257
Bsp1720I GCTNAGC 2 cut(s) 1110, 2034
Bsp19I CCATGG 2 cut(s) 1169, 2234
BspACI CCGC 5 cut(s) 107, 804, 1604, 2301, 2362
BspANI GGCC 8 cut(s) 708, 793, 1333, 1368, 1439, 1579, 2242, 2492
BspCNI CTCAG 6 cut(s) 22, 667, 1566, 1734, 2026, 2557
BspEI TCCGGA 2 cut(s) 766, 2257
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 1705
BspLI GGNNCC 6 cut(s) 280, 358, 864, 1369, 1522, 2025
BspMAI CTGCAG 3 cut(s) 199, 684, 836
BspMI ACCTGC 3 cut(s) 202, 1488, 1877
BspPI GGATC 9 cut(s) 154, 737, 758, 857, 870, 1006, 1037, 2018, 2031
BspT104I TTCGAA 1 cut(s) 328
BspT107I GGYRCC 2 cut(s) 356, 1520
BspTNI GGTCTC 1 cut(s) 2090
BsrDI GCAATG 2 cut(s) 1750, 1806
BsrFI RCCGGY 1 cut(s) 1661
BsrI ACTGG 3 cut(s) 789, 844, 1742
BssAI RCCGGY 1 cut(s) 1661
BssNAI GTATAC 1 cut(s) 1842
BssNI GRCGYC 2 cut(s) 357, 644
BssT1I CCWWGG 6 cut(s) 153, 757, 799, 1169, 1440, 2234
Bst1107I GTATAC 1 cut(s) 1842
Bst2UI CCWGG 3 cut(s) 586, 1279, 1651
Bst6I CTCTTC 2 cut(s) 596, 2609
BstACI GRCGYC 2 cut(s) 357, 644
BstAPI GCANNNNNTGC 2 cut(s) 688, 1856
BstBAI YACGTR 1 cut(s) 1495
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 2680
BstDEI CTNAG 9 cut(s) 9, 665, 675, 1110, 1574, 1686, 1742, 2034, 2565
BstDSI CCRYGG 4 cut(s) 1169, 1929, 2234, 2719
BstEII GGTNACC 1 cut(s) 2296
BstF5I GGATG 6 cut(s) 23, 82, 459, 1660, 1804, 2104
BstFNI CGCG 1 cut(s) 109
BstH2I RGCGCY 3 cut(s) 360, 832, 1154
BstHHI GCGC 5 cut(s) 111, 359, 831, 1153, 1799
BstMAI GTCTC 4 cut(s) 471, 635, 1257, 2090
BstMCI CGRYCG 1 cut(s) 1604
BstMWI GCNNNNNNNGC 6 cut(s) 346, 688, 1732, 1856, 2239, 2704
BstNI CCWGG 3 cut(s) 586, 1279, 1651
BstNSI RCATGY 2 cut(s) 2341, 2389
BstPI GGTNACC 1 cut(s) 2296
BstSCI CCNGG 3 cut(s) 584, 1277, 1649
BstSFI CTRYAG 5 cut(s) 195, 680, 832, 1813, 2028
BstSLI GKGCMC 1 cut(s) 1737
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 8 cut(s) 209, 666, 818, 897, 1040, 1790, 1917, 2597
BstV2I GAAGAC 3 cut(s) 850, 1122, 2067
BstX2I RGATCY 5 cut(s) 519, 729, 862, 1993, 2023
BstYI RGATCY 5 cut(s) 519, 729, 862, 1993, 2023
BstZ17I GTATAC 1 cut(s) 1842
BsuRI GGCC 8 cut(s) 708, 793, 1333, 1368, 1439, 1579, 2242, 2492
BtgI CCRYGG 4 cut(s) 1169, 1929, 2234, 2719
BtsCI GGATG 6 cut(s) 23, 82, 459, 1660, 1804, 2104
BtsI GCAGTG 3 cut(s) 207, 895, 928
BveI ACCTGC 3 cut(s) 202, 1488, 1877
Cac8I GCNNGC 1 cut(s) 2680
CciI TCATGA 1 cut(s) 1705
CfoI GCGC 5 cut(s) 111, 359, 831, 1153, 1799
Cfr10I RCCGGY 1 cut(s) 1661
Cfr13I GGNCC 5 cut(s) 279, 706, 769, 1367, 1690
CseI GACGC 1 cut(s) 652
CspAI ACCGGT 1 cut(s) 1661
CspCI CAANNNNNGTGG 6 cut(s) 1377, 1412, 1870, 1905, 2168, 2203
DdeI CTNAG 9 cut(s) 9, 665, 675, 1110, 1574, 1686, 1742, 2034, 2565
DinI GGCGCC 1 cut(s) 358
EaeI YGGCCR 2 cut(s) 1331, 2490
Eam1104I CTCTTC 2 cut(s) 596, 2609
EarI CTCTTC 2 cut(s) 596, 2609
EciI GGCGGA 1 cut(s) 819
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 6 cut(s) 153, 757, 799, 1169, 1440, 2234
Eco147I AGGCCT 3 cut(s) 793, 1439, 1579
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 2090
Eco47I GGWCC 3 cut(s) 279, 769, 1690
Eco47III AGCGCT 1 cut(s) 1152
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 3 cut(s) 620, 1581, 2415
Eco88I CYCGRG 4 cut(s) 823, 1022, 1355, 1866
Eco91I GGTNACC 1 cut(s) 2296
EcoICRI GAGCTC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 2296
EcoRI GAATTC 1 cut(s) 991
EcoRII CCWGG 3 cut(s) 584, 1277, 1649
EcoT14I CCWWGG 6 cut(s) 153, 757, 799, 1169, 1440, 2234
EcoT22I ATGCAT 2 cut(s) 1273, 1806
EcoT38I GRGCYC 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
ErhI CCWWGG 6 cut(s) 153, 757, 799, 1169, 1440, 2234
Esp3I CGTCTC 3 cut(s) 471, 635, 1257
FalI AAGNNNNNCTT 2 cut(s) 1622, 1654
FaqI GGGAC 2 cut(s) 285, 1582
FauNDI CATATG 3 cut(s) 1005, 2590, 2692
FbaI TGATCA 2 cut(s) 93, 1383
FblI GTMKAC 1 cut(s) 1841
Fnu4HI GCNGC 8 cut(s) 198, 680, 832, 886, 1029, 1779, 1906, 2586
FokI GGATG 6 cut(s) 10, 89, 446, 1667, 1791, 2111
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 8 cut(s) 198, 680, 832, 886, 1029, 1779, 1906, 2586
FspBI CTAG 5 cut(s) 789, 1154, 1289, 1319, 2621
GlaI GCGC 5 cut(s) 110, 358, 830, 1152, 1798
GluI GCNGC 8 cut(s) 198, 680, 832, 886, 1029, 1779, 1906, 2586
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 2 cut(s) 294, 2399
HaeII RGCGCY 3 cut(s) 360, 832, 1154
HaeIII GGCC 8 cut(s) 708, 793, 1333, 1368, 1439, 1579, 2242, 2492
HapII CCGG 4 cut(s) 767, 1662, 1837, 2258
HgaI GACGC 1 cut(s) 652
HhaI GCGC 5 cut(s) 111, 359, 831, 1153, 1799
Hin1I GRCGYC 2 cut(s) 357, 644
Hin6I GCGC 5 cut(s) 109, 357, 829, 1151, 1797
HinP1I GCGC 5 cut(s) 109, 357, 829, 1151, 1797
HindIII AAGCTT 1 cut(s) 1980
HpaII CCGG 4 cut(s) 767, 1662, 1837, 2258
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 9 cut(s) 37, 382, 1026, 1088, 1399, 1439, 1511, 1998, 2618
HpyCH4IV ACGT 4 cut(s) 480, 1103, 1494, 1695
HpyF10VI GCNNNNNNNGC 6 cut(s) 346, 688, 1732, 1856, 2239, 2704
HpyF3I CTNAG 9 cut(s) 9, 665, 675, 1110, 1574, 1686, 1742, 2034, 2565
HpySE526I ACGT 4 cut(s) 480, 1103, 1494, 1695
Hsp92I GRCGYC 2 cut(s) 357, 644
HspAI GCGC 5 cut(s) 109, 357, 829, 1151, 1797
KasI GGCGCC 1 cut(s) 356
Kpn2I TCCGGA 2 cut(s) 766, 2257
KpnI GGTACC 1 cut(s) 1524
Ksp22I TGATCA 2 cut(s) 93, 1383
LmnI GCTCC 5 cut(s) 25, 346, 485, 2173, 2675
Lsp1109I GCAGC 8 cut(s) 209, 666, 818, 897, 1040, 1790, 1917, 2597
LweI GCATC 6 cut(s) 108, 543, 1258, 1645, 1813, 2089
MaeI CTAG 5 cut(s) 789, 1154, 1289, 1319, 2621
MaeII ACGT 4 cut(s) 480, 1103, 1494, 1695
MaeIII GTNAC 9 cut(s) 211, 253, 259, 265, 1099, 1321, 1613, 2296, 2725
MfeI CAATTG 2 cut(s) 2055, 2370
MflI RGATCY 5 cut(s) 519, 729, 862, 1993, 2023
MhlI GDGCHC 2 cut(s) 183, 1737
MlsI TGGCCA 1 cut(s) 1333
MluNI TGGCCA 1 cut(s) 1333
Mly113I GGCGCC 1 cut(s) 357
MlyI GAGTC 6 cut(s) 1107, 1136, 1703, 1741, 2171, 2554
MmeI TCCRAC 4 cut(s) 363, 463, 1670, 2653
Mox20I TGGCCA 1 cut(s) 1333
Mph1103I ATGCAT 2 cut(s) 1273, 1806
MroI TCCGGA 2 cut(s) 766, 2257
MroXI GAANNNNTTC 1 cut(s) 2708
MscI TGGCCA 1 cut(s) 1333
MseI TTAA 8 cut(s) 54, 72, 567, 1089, 1218, 1299, 1793, 2106
MslI CAYNNNNRTG 2 cut(s) 777, 2732
Msp20I TGGCCA 1 cut(s) 1333
MspA1I CMGCKG 4 cut(s) 272, 967, 2033, 2303
MspI CCGG 4 cut(s) 767, 1662, 1837, 2258
MspR9I CCNGG 3 cut(s) 586, 1279, 1651
MunI CAATTG 2 cut(s) 2055, 2370
MvaI CCWGG 3 cut(s) 586, 1279, 1651
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 6 cut(s) 346, 688, 1732, 1856, 2239, 2704
NarI GGCGCC 1 cut(s) 357
NcoI CCATGG 2 cut(s) 1169, 2234
NdeI CATATG 3 cut(s) 1005, 2590, 2692
NlaIV GGNNCC 6 cut(s) 280, 358, 864, 1369, 1522, 2025
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 5 cut(s) 253, 259, 1099, 1321, 2725
NsiI ATGCAT 2 cut(s) 1273, 1806
NspI RCATGY 2 cut(s) 2341, 2389
NspV TTCGAA 1 cut(s) 328
PaeR7I CTCGAG 2 cut(s) 1022, 1866
PagI TCATGA 1 cut(s) 1705
PaqCI CACCTGC 2 cut(s) 202, 1877
PceI AGGCCT 3 cut(s) 793, 1439, 1579
PciI ACATGT 1 cut(s) 2337
PcsI WCGNNNNNNNCGW 2 cut(s) 295, 759
PdmI GAANNNNTTC 1 cut(s) 2708
PflMI CCANNNNNTGG 1 cut(s) 1121
PinAI ACCGGT 1 cut(s) 1661
PkrI GCNGC 8 cut(s) 199, 681, 833, 887, 1030, 1780, 1907, 2587
PleI GAGTC 6 cut(s) 1106, 1135, 1703, 1741, 2170, 2553
PluTI GGCGCC 1 cut(s) 360
PpsI GAGTC 6 cut(s) 1106, 1135, 1703, 1741, 2170, 2553
Ppu21I YACGTR 1 cut(s) 1495
PscI ACATGT 1 cut(s) 2337
PsiI TTATAA 1 cut(s) 2579
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 584, 1277, 1649
PspEI GGTNACC 1 cut(s) 2296
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 3 cut(s) 584, 1277, 1649
PspN4I GGNNCC 6 cut(s) 280, 358, 864, 1369, 1522, 2025
PspPI GGNCC 5 cut(s) 279, 706, 769, 1367, 1690
PspXI VCTCGAGB 1 cut(s) 1022
PstI CTGCAG 3 cut(s) 199, 684, 836
PsuI RGATCY 5 cut(s) 519, 729, 862, 1993, 2023
PvuII CAGCTG 3 cut(s) 272, 967, 2033
RseI CAYNNNNRTG 2 cut(s) 777, 2732
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 8 cut(s) 54, 72, 567, 1089, 1218, 1299, 1793, 2106
SatI GCNGC 8 cut(s) 198, 680, 832, 886, 1029, 1779, 1906, 2586
Sau96I GGNCC 5 cut(s) 279, 706, 769, 1367, 1690
ScaI AGTACT 1 cut(s) 1925
SchI GAGTC 6 cut(s) 1107, 1136, 1703, 1741, 2171, 2554
ScrFI CCNGG 3 cut(s) 586, 1279, 1651
SduI GDGCHC 2 cut(s) 183, 1737
SfaNI GCATC 6 cut(s) 108, 543, 1258, 1645, 1813, 2089
SfcI CTRYAG 5 cut(s) 195, 680, 832, 1813, 2028
SfoI GGCGCC 1 cut(s) 358
Sfr274I CTCGAG 2 cut(s) 1022, 1866
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 3 cut(s) 279, 769, 1690
SlaI CTCGAG 2 cut(s) 1022, 1866
SmiMI CAYNNNNRTG 2 cut(s) 777, 2732
SmlI CTYRAG 2 cut(s) 1022, 1866
SmoI CTYRAG 2 cut(s) 1022, 1866
SseBI AGGCCT 3 cut(s) 793, 1439, 1579
SsiI CCGC 5 cut(s) 107, 804, 1604, 2301, 2362
SspDI GGCGCC 1 cut(s) 356
SspI AATATT 1 cut(s) 571
SspMI CTAG 5 cut(s) 789, 1154, 1289, 1319, 2621
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 3 cut(s) 793, 1439, 1579
StyD4I CCNGG 3 cut(s) 584, 1277, 1649
StyI CCWWGG 6 cut(s) 153, 757, 799, 1169, 1440, 2234
TaiI ACGT 4 cut(s) 483, 1106, 1497, 1698
TatI WGTACW 3 cut(s) 1757, 1923, 2334
Tru1I TTAA 8 cut(s) 54, 72, 567, 1089, 1218, 1299, 1793, 2106
Tru9I TTAA 8 cut(s) 54, 72, 567, 1089, 1218, 1299, 1793, 2106
TseFI GTSAC 5 cut(s) 253, 259, 1099, 1321, 2725
TseI GCWGC 8 cut(s) 197, 679, 831, 885, 1028, 1778, 1905, 2585
Tsp45I GTSAC 5 cut(s) 253, 259, 1099, 1321, 2725
TspDTI ATGAA 7 cut(s) 514, 519, 581, 795, 957, 2391, 2413
TspGWI ACGGA 5 cut(s) 152, 236, 1340, 1946, 2186
Van91I CCANNNNNTGG 1 cut(s) 1121
VneI GTGCAC 1 cut(s) 1733
VpaK11BI GGWCC 3 cut(s) 279, 769, 1690
XapI RAATTY 6 cut(s) 991, 1055, 1247, 2408, 2597, 2650
XceI RCATGY 2 cut(s) 2341, 2389
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XhoI CTCGAG 2 cut(s) 1022, 1866
XmiI GTMKAC 1 cut(s) 1841
XmnI GAANNNNTTC 1 cut(s) 2708
XspI CTAG 5 cut(s) 789, 1154, 1289, 1319, 2621
ZrmI AGTACT 1 cut(s) 1925
Zsp2I ATGCAT 2 cut(s) 1273, 1806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.