Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

362571 .. 365076

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1003700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATTCGAAGCAGTCAATCTGAGCTACAGACTTTGCAAGGAGATGGGGCGGGCCAAAGAAAAACATCTAATAGGATCTACGATTATGATACTTATAACGACCTTGGCGATCCAGACCACGATGATAAACTGGCTAGGCCTGTCCTTGGCGGCAAAGATCACCCGTACCCGAGGAGCTGCAGAACTGGAAGACCACGCTCTGAAAAGGATCCTTTATCGGAACAAAGAAGCAGCAGTGACTATGCACCAAGAAAACAAAGAATCAGCAGTGTGTATGTAACAAGAGATGAAGCGTTTTCAGAGGTGAAACATCTGACATTTTTTACAAAGACACTGAATTCTGTGCTACGTACGTTGATCCCTTCGCTCGAGGCAGCAGGAATTCTTGATCCAGAACCAGAATTTACAGACTTCACAGCCATAGATTCACTGTTTAACGAAGGAGTCACGTTAGAAGATTTCCCAGACAATCTTCAAAGGGCTAGTCAAGACTATCCCATTGCTAGTGATAAATTTGCTTGGTTTAGAGTTGATGCATTTTCCAGGCAAACTCTAGCTGGTCTTAATCCATGTAGTATCGAGATAGTGACGGAATGGCAATTGAATAGTAAACTTGACCCCGAGATTTATGGATCCCCTGAATCATTGATCACAACAGAAGTGGTTGAGAAGGCGATCAAAGGTTGTATGACTGTCAATGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

4.82

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	6 - 234	2e-63	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AciI	CCGC	2 cut(s)	50, 150
AclWI	GGATC	8 cut(s)	83, 104, 203, 216, 352, 383, 627, 640
AcsI	RAATTY	4 cut(s)	337, 381, 401, 512
AfaI	GTAC	2 cut(s)	167, 352
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	476, 604
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	3 cut(s)	25, 177, 557
AluI	AGCT	3 cut(s)	25, 177, 557
AlwI	GGATC	8 cut(s)	83, 104, 203, 216, 352, 383, 627, 640
Ama87I	CYCGRG	3 cut(s)	169, 368, 620
AoxI	GGCC	2 cut(s)	52, 137
ApeKI	GCWGC	3 cut(s)	177, 231, 374
ApoI	RAATTY	4 cut(s)	337, 381, 401, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	469, 501
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	152, 316
AsuII	TTCGAA	1 cut(s)	7
AvaI	CYCGRG	3 cut(s)	169, 368, 620
BamHI	GGATCC	2 cut(s)	208, 632
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	164, 243, 386
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	544
BclI	TGATCA	1 cut(s)	648
BfaI	CTAG	4 cut(s)	135, 483, 504, 554
BfmI	CTRYAG	2 cut(s)	26, 178
BisI	GCNGC	4 cut(s)	151, 178, 232, 375
BlsI	GCNGC	4 cut(s)	152, 179, 233, 376
Bme1390I	CCNGG	1 cut(s)	544
BmeT110I	CYCGRG	3 cut(s)	169, 368, 620
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	210, 634
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	103, 145, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	135, 190
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	3 cut(s)	103, 145, 170
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	135, 190
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	164, 243, 386
BshFI	GGCC	2 cut(s)	54, 139
BsiHKCI	CYCGRG	3 cut(s)	169, 368, 620
BsiWI	CGTACG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	2 cut(s)	54, 139
BsoBI	CYCGRG	3 cut(s)	169, 368, 620
Bsp119I	TTCGAA	1 cut(s)	7
Bsp143I	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
BspACI	CCGC	2 cut(s)	50, 150
BspANI	GGCC	2 cut(s)	54, 139
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	210, 634
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	8 cut(s)	83, 104, 203, 216, 352, 383, 627, 640
BspT104I	TTCGAA	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	135, 190
BssECI	CCNNGG	3 cut(s)	103, 145, 170
BssMI	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
BssT1I	CCWWGG	2 cut(s)	103, 145
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	432, 694
BstBAI	YACGTR	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	21
BstKTI	GATC	9 cut(s)	78, 112, 160, 211, 360, 391, 635, 651, 678
BstMBI	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	2 cut(s)	26, 178
BstSNI	TACGTA	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	164, 243, 386
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	75, 208, 632
BstYI	RGATCY	3 cut(s)	75, 208, 632
BsuRI	GGCC	2 cut(s)	54, 139
BtsI	GCAGTG	2 cut(s)	241, 274
BtsIMutI	CAGTG	4 cut(s)	241, 274, 332, 428
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	166, 351
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	1 cut(s)	570
CviJI	RGCY	8 cut(s)	25, 54, 134, 139, 177, 419, 482, 557
CviKI_1	RGCY	8 cut(s)	25, 54, 134, 139, 177, 419, 482, 557
CviQI	GTAC	2 cut(s)	166, 351
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	9 cut(s)	77, 111, 159, 210, 359, 390, 634, 650, 677
DpnII	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
Eco105I	TACGTA	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	103, 145
Eco147I	AGGCCT	1 cut(s)	139
Eco88I	CYCGRG	3 cut(s)	169, 368, 620
EcoRI	GAATTC	2 cut(s)	337, 381
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	103, 145
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	103, 145
FaeI	CATG	1 cut(s)	573
FaiI	YATR	9 cut(s)	87, 96, 243, 276, 422, 571, 630, 689, 706
FatI	CATG	1 cut(s)	569
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	151, 178, 232, 375
Fsp4HI	GCNGC	4 cut(s)	151, 178, 232, 375
FspBI	CTAG	4 cut(s)	135, 483, 504, 554
GluI	GCNGC	4 cut(s)	151, 178, 232, 375
HaeIII	GGCC	2 cut(s)	54, 139
Hin1II	CATG	1 cut(s)	573
HinfI	GANTC	5 cut(s)	4, 261, 425, 444, 641
HphI	GGTGA	2 cut(s)	152, 316
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	5 cut(s)	22, 202, 220, 301, 315
Hpy188III	TCNNGA	5 cut(s)	113, 386, 392, 488, 580
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	372, 434, 664
HpyCH4III	ACNGT	2 cut(s)	432, 694
HpyCH4IV	ACGT	3 cut(s)	349, 353, 449
HpyCH4V	TGCA	4 cut(s)	37, 180, 245, 536
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	3 cut(s)	349, 353, 449
Hsp92II	CATG	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	3 cut(s)	164, 243, 386
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	4 cut(s)	135, 483, 504, 554
MaeII	ACGT	3 cut(s)	349, 353, 449
MaeIII	GTNAC	4 cut(s)	236, 277, 445, 586
MalI	GATC	9 cut(s)	77, 111, 159, 210, 359, 390, 634, 650, 677
MboI	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
MboII	GAAGA	3 cut(s)	201, 464, 467
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	3 cut(s)	75, 208, 632
MluCI	AATT	5 cut(s)	337, 381, 401, 512, 599
MlyI	GAGTC	1 cut(s)	453
MnlI	CCTC	3 cut(s)	165, 295, 364
Mph1103I	ATGCAT	1 cut(s)	538
MseI	TTAA	2 cut(s)	435, 564
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	544
NdeII	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
NlaIII	CATG	1 cut(s)	573
NlaIV	GGNNCC	2 cut(s)	210, 634
NmuCI	GTSAC	3 cut(s)	236, 445, 586
NsiI	ATGCAT	1 cut(s)	538
NspV	TTCGAA	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	4, 261, 425, 641
Pfl23II	CGTACG	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	152, 179, 233, 376
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Ppu21I	YACGTR	1 cut(s)	350
PsiI	TTATAA	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspLI	CGTACG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	210, 634
PspPI	GGNCC	1 cut(s)	52
PspXI	VCTCGAGB	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	182
PsuI	RGATCY	3 cut(s)	75, 208, 632
RsaI	GTAC	2 cut(s)	167, 352
RsaNI	GTAC	2 cut(s)	166, 351
SaqAI	TTAA	2 cut(s)	435, 564
SatI	GCNGC	4 cut(s)	151, 178, 232, 375
Sau3AI	GATC	9 cut(s)	75, 109, 157, 208, 357, 388, 632, 648, 675
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	544
SetI	ASST	9 cut(s)	27, 105, 179, 306, 352, 356, 452, 559, 685
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	2 cut(s)	26, 178
Sfr274I	CTCGAG	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	5 cut(s)	337, 381, 401, 512, 599
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	2 cut(s)	50, 150
SspMI	CTAG	4 cut(s)	135, 483, 504, 554
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	2 cut(s)	103, 145
TaaI	ACNGT	2 cut(s)	432, 694
TaiI	ACGT	3 cut(s)	352, 356, 452
TaqI	TCGA	3 cut(s)	7, 369, 579
TasI	AATT	5 cut(s)	337, 381, 401, 512, 599
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	4, 261, 425, 641
Tru1I	TTAA	2 cut(s)	435, 564
Tru9I	TTAA	2 cut(s)	435, 564
TscAI	CASTG	4 cut(s)	241, 274, 339, 435
TseFI	GTSAC	3 cut(s)	236, 445, 586
TseI	GCWGC	3 cut(s)	177, 231, 374
Tsp45I	GTSAC	3 cut(s)	236, 445, 586
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	4 cut(s)	241, 274, 339, 435
XapI	RAATTY	4 cut(s)	337, 381, 401, 512
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	4 cut(s)	135, 483, 504, 554
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.