RchiOBHm_Chr1g0314151

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
1462401 .. 1469489
7089 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54483

Sequence Viewer

Length: 2742 bp
ATGATGATGATGAAGCCTCAGCTGCAAAAACCACTCTCCTCCTCTGCTAGATCTAGTCCTCTCTTACCACCAAAACCCGGCAGCTCCGCCATTCTGAGCAGCCCTTTCTTCCTCAACATCCTTCCTGCACGCGGCCACACAAAGCACTACTTGAGCAAAAAATATAATCGCATCCGTGCCTCCAGTGAAGTAAAGGCAGCAACAGCAACCAACACAGGGGTAGATAAAACAGATACTGCAGTTACAGTAAAGGCAGTGGTTACAGTGCAAGAAACAGCGGCAAACATCCTCTCCACCCTTAGCTTGACTGCACCGCTCGACACCCTCACCGATTTCGCCGGCAAAACCTTTCTTCTCGAGCTCGTCAGCGCTCAACTTGACCCCAGGACTGGGTTGGAGAAGGAAACAATAAAGGGGTATGCACACAAAGTGAACCAAAAAGAGACGATCGTCACGTACGAGAGTGTGCTGACGATCCCAGCAGGGTTCGGGGATATTGGCGCGGTTCAGGTTGAGAATGAGCACCACAAGGAGGCTTACATCAAGAGTATCGAGATCACCGGCTTCCCAAATGCCACATCTGTTAGTGTTCCATGTAATTCATGGACTCATTCCAAGTATGACAATAAGCAGAAGAGAATCTTTTTCACCAACAAGTCTTACTTACCATCAGAGACACCAAGTGGGATCAAGAGGCTAAGAGAAGAGGAGTTGCAACTTAAGCGAGGAAATGGCGAGGGTGAAAGGAAAGCATCTGAAAGGATTTACGATTATGATACATACAATGATCTTGGAGACCCGGATAGCAAAGACGAGTTGGCTAGGCCTGTCCTTGGTGGCAAAGACCACCCGTACCCTAGGCGCTGCAGAACTGGACGACCACGCACTAAAAAGGATCCATTATCAGAGGCAAGAAGCAGCAGCGTGTATGTGCCAAGAGATGAAGCGTTTGCAGAGTTGAAACAGCTCACATTCTCTGCAAAGGCCTTGAAATCTGTGCTGCACGCATTGCTTCCTCAGCTTGAGATAACACTTGTTGATCCAGAGCTAGGATTTCCCTACTTCACAGCCATAGATTCATTGTTCAATGAAGGAGTCACATTGCCTAAGCCAACAGCTAGTGGCTTTTTTCAGTCAATCATCCCAAGGCTAGTCAAGGCAATTAGCGATGGACAAGATGATCTCTTGCTCTTTGAGACCCCTGAAATACTTGATCGTGATAAATTTTCTTGGTTCAGAGATGAAGAATTTTCTCGACAAACTCTAGCTGGTCTTAATCCATATAGCATAGAGCTAGTTACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCAGCTAAATCATTGATCACAACAGAACTGGTGGAGAAGGAGATCAGAGGCTTCATGACTGTCAATGAGGCCTTAAAAAGAAAGAAGCTCTTTATTTTGGATTATCATGATCTGCTCATGCCTTATGTGAACAAAGTGAGAGAGGTTGAAGGAACCACACTGTATGGTTCTCGGACACTTTTCTTCCTCAATGAGAATGGCACACTGAGGCCTGTTGCCATTGAACTCACTCGGCCACCCATTGGTGACAAGCCCCAATGGAAGGAAGTGTTTACCCCAACATGGGATGCCACTGGTTGCTGGCTTTGGAGGCTTGCGAAAGCCCACGTTTGTGCCCATGATTCAGGCTATCATCAGCTTGTCATCCACTGGTTGAGGACTCATTGTTGTACAGAACCATACATAATTGCAGCTAATCGACAATTAAGTGCAATGCATCCCATCTATAGGCTTCTACATCCTCATTTCCGTTATACAATGGAAATCAATGCTCTGGCTCGAGAAAGCCTCATTAATGCAGGTGGAATCATTGAGGCCTGCTTCTCACCAGCAAAGTACTCAATTGAGCTCAGTTCTGCCGCTTATGACCAGCTTTGGCGCTTTGACATGGAAGCTTTGCCTTCAGATCTAATCAGAAGGGGAATGGCAGTTGAGGATCCTACAGCTGAGCATGGTGTGAGGCTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTCTGTGGGATGCCATTAAGGAGTGGGTGGGTGACTATGTGAATCACTATTATCCAGACCCAACTCTTGTTGAATCTGATAATGAGCTTCAAGCTTGGTGGACAGATGTTAGAACCAAAGGCCATGCAGACAAAAAAGATGAACCATGGTGGCCTGTTTTGAAAACCCCAGAAGATCTCATTCATACCTTGACAACTATAATTTGGGTTACAGCTGGACATCATGCTGCAGTGAACTTTGGTCAGTACATGTATGCCGGATACTTCCCGAACCGGCCTACAATAGCTCGAAGCAACATGCCAACTGAAGATCCAAATGACGATCTTTTCAAGATATTTTTGAAGAAACCAGAAGCTGCATTGCTGAGGTGCTTCCCCTCACAGATTCAAGCAACAAAAGTGATGGCTGTCTTAGATGTATTATCAAACCATTCACCCGATGAGGAGTACATTGGTGGGAATGTGGAGTCATCTTGGGCTGAAAACCCGGTGATAAATGCAGCTTTCGAGCGGTTCAATGGAAATTTGAAGAAGCTAGAAGGAATTATTGATGAGAGGAACACCAATATGAAGCTGAAAAACAGAGTTGGAGCAGGGGTTGTTCCATATGAGCTTTTGAAGCCATTCTCAGAATCAGGGGTCACAGGAAAGGGAGTTCCCAACAGCATCTCCATCTAA

Protein Analysis

913

Amino Acids

102.84

Weight (kDa)

6.22

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 146 - 216 9.7e-08 PLAT/LH2 domain
Lipoxygenase PF00305 229 - 896 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1853
Acc36I ACCTGC 1 cut(s) 1853
AccB7I CCANNNNNTGG 1 cut(s) 1586
AccBSI CCGCTC 2 cut(s) 316, 2575
AccII CGCG 2 cut(s) 132, 503
AciI CCGC 7 cut(s) 87, 132, 278, 314, 503, 1923, 2575
AclWI GGATC 8 cut(s) 469, 695, 890, 903, 1034, 1994, 2007, 2369
AcoI YGGCCR 3 cut(s) 133, 1307, 1577
AcsI RAATTY 3 cut(s) 1223, 1247, 2587
AcuI CTGAAG 2 cut(s) 1950, 2391
AdeI CACNNNGTG 2 cut(s) 430, 683
AfaI GTAC 6 cut(s) 458, 854, 1735, 1901, 2312, 2513
AfeI AGCGCT 1 cut(s) 370
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 2313
AjnI CCWGG 1 cut(s) 383
AleI CACNNNNGTG 1 cut(s) 1674
AloI GAACNNNNNNTCC 2 cut(s) 2703, 2735
Alw21I GWGCWC 3 cut(s) 363, 525, 1914
Alw26I GTCTC 5 cut(s) 437, 668, 789, 1190, 2066
AlwI GGATC 8 cut(s) 469, 695, 890, 903, 1034, 1994, 2007, 2369
AlwNI CAGNNNCTG 2 cut(s) 236, 2420
Ama87I CYCGRG 3 cut(s) 356, 1331, 1842
Aor51HI AGCGCT 1 cut(s) 370
ApoI RAATTY 3 cut(s) 1223, 1247, 2587
ArsI GACNNNNNNTTYG 2 cut(s) 2030, 2062
AseI ATTAAT 1 cut(s) 1857
Asp700I GAANNNNTTC 1 cut(s) 2687
AspA2I CCTAGG 1 cut(s) 857
AspLEI GCGC 4 cut(s) 371, 503, 864, 1944
AspS9I GGNCC 1 cut(s) 1343
AsuC2I CCSGG 3 cut(s) 78, 800, 2552
AsuHPI GGTGA 9 cut(s) 319, 550, 640, 752, 1601, 1881, 2108, 2490, 2566
AvaI CYCGRG 3 cut(s) 356, 1331, 1842
AvrII CCTAGG 1 cut(s) 857
BaeGI GKGCMC 1 cut(s) 1681
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BalI TGGCCA 1 cut(s) 1309
BamHI GGATCC 2 cut(s) 895, 1999
BanII GRGCYC 2 cut(s) 363, 1914
BbsI GAAGAC 1 cut(s) 2043
Bbv12I GWGCWC 3 cut(s) 363, 525, 1914
BbvCI CCTCAGC 3 cut(s) 18, 1017, 2429
BccI CCATC 5 cut(s) 676, 1163, 1793, 2051, 2461
BciT130I CCWGG 1 cut(s) 385
BciVI GTATCC 1 cut(s) 2318
BclI TGATCA 1 cut(s) 1359
BcnI CCSGG 3 cut(s) 78, 800, 2552
BcoDI GTCTC 5 cut(s) 437, 668, 789, 1190, 2066
BfmI CTRYAG 5 cut(s) 237, 865, 1789, 2004, 2292
BfoI RGCGCY 3 cut(s) 372, 865, 1945
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 1853
BfuI GTATCC 1 cut(s) 2318
BglII AGATCT 3 cut(s) 50, 1969, 2239
BlnI CCTAGG 1 cut(s) 857
BlpI GCTNAGC 1 cut(s) 2010
BmcAI AGTACT 1 cut(s) 1901
Bme1390I CCNGG 4 cut(s) 78, 385, 800, 2552
BmeT110I CYCGRG 3 cut(s) 356, 1331, 1842
BmgT120I GGNCC 1 cut(s) 1343
BmiI GGNNCC 3 cut(s) 897, 1498, 2001
BmrFI CCNGG 4 cut(s) 78, 385, 800, 2552
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 5 cut(s) 180, 761, 1621, 1789, 2065
BmuI ACTGGG 1 cut(s) 399
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 2043
BplI GAGNNNNNCTC 2 cut(s) 1836, 1868
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 5 cut(s) 18, 299, 1017, 1107, 2429
Bpu1102I GCTNAGC 1 cut(s) 2010
BpuEI CTTGAG 2 cut(s) 172, 1043
BpuMI CCSGG 3 cut(s) 78, 800, 2552
BsaAI YACGTR 1 cut(s) 456
BsaI GGTCTC 3 cut(s) 789, 1190, 2066
BsaJI CCNNGG 5 cut(s) 383, 832, 857, 1145, 2210
BsaXI ACNNNNNCTCC 5 cut(s) 275, 305, 2646, 2676, 2717
Bse118I RCCGGY 3 cut(s) 338, 560, 2337
Bse1I ACTGG 6 cut(s) 183, 394, 877, 1377, 1642, 1718
Bse3DI GCAATG 4 cut(s) 1007, 1100, 1782, 2423
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 5 cut(s) 383, 832, 857, 1145, 2210
BseGI GGATG 9 cut(s) 117, 171, 285, 1140, 1636, 1707, 1780, 1801, 2080
BseMI GCAATG 4 cut(s) 1007, 1100, 1782, 2423
BseMII CTCAG 8 cut(s) 32, 86, 1031, 1541, 1927, 2001, 2420, 2706
BseNI ACTGG 6 cut(s) 183, 394, 877, 1377, 1642, 1718
BseRI GAGGAG 4 cut(s) 28, 31, 722, 2522
BseSI GKGCMC 1 cut(s) 1681
BseYI CCCAGC 2 cut(s) 478, 1345
BsgI GTGCAG 3 cut(s) 111, 294, 986
Bsh1236I CGCG 2 cut(s) 132, 503
Bsh1285I CGRYCG 1 cut(s) 450
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 3 cut(s) 363, 525, 1914
BsiHKCI CYCGRG 3 cut(s) 356, 1331, 1842
BsiSI CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2552
BsiWI CGTACG 1 cut(s) 456
BsmAI GTCTC 5 cut(s) 437, 668, 789, 1190, 2066
BsmBI CGTCTC 1 cut(s) 437
Bso31I GGTCTC 3 cut(s) 789, 1190, 2066
BsoBI CYCGRG 3 cut(s) 356, 1331, 1842
Bsp1286I GDGCHC 4 cut(s) 363, 525, 1681, 1914
Bsp1407I TGTACA 1 cut(s) 1733
Bsp1720I GCTNAGC 1 cut(s) 2010
Bsp19I CCATGG 1 cut(s) 2210
BspACI CCGC 7 cut(s) 87, 132, 278, 314, 503, 1923, 2575
BspCNI CTCAG 8 cut(s) 31, 87, 1030, 1542, 1926, 2002, 2421, 2705
BspFNI CGCG 2 cut(s) 132, 503
BspHI TCATGA 2 cut(s) 1398, 1450
BspLI GGNNCC 3 cut(s) 897, 1498, 2001
BspMAI CTGCAG 3 cut(s) 241, 869, 2296
BspMI ACCTGC 1 cut(s) 1853
BspPI GGATC 8 cut(s) 469, 695, 890, 903, 1034, 1994, 2007, 2369
BspTI CTTAAG 1 cut(s) 719
BspTNI GGTCTC 3 cut(s) 789, 1190, 2066
BsrBI CCGCTC 2 cut(s) 316, 2575
BsrDI GCAATG 4 cut(s) 1007, 1100, 1782, 2423
BsrFI RCCGGY 3 cut(s) 338, 560, 2337
BsrGI TGTACA 1 cut(s) 1733
BsrI ACTGG 6 cut(s) 183, 394, 877, 1377, 1642, 1718
BssAI RCCGGY 3 cut(s) 338, 560, 2337
BssECI CCNNGG 5 cut(s) 383, 832, 857, 1145, 2210
BssT1I CCWWGG 4 cut(s) 832, 857, 1145, 2210
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 4 cut(s) 247, 265, 1405, 1506
Bst6I CTCTTC 2 cut(s) 629, 699
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 1009
BstAUI TGTACA 1 cut(s) 1733
BstBAI YACGTR 1 cut(s) 456
BstC8I GCNNGC 6 cut(s) 130, 340, 1005, 1646, 1659, 1882
BstDSI CCRYGG 1 cut(s) 2210
BstF5I GGATG 9 cut(s) 117, 171, 285, 1140, 1636, 1707, 1780, 1801, 2080
BstFNI CGCG 2 cut(s) 132, 503
BstH2I RGCGCY 3 cut(s) 372, 865, 1945
BstHHI GCGC 4 cut(s) 371, 503, 864, 1944
BstMAI GTCTC 5 cut(s) 437, 668, 789, 1190, 2066
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 7 cut(s) 22, 203, 721, 1009, 1018, 1654, 2683
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 2 cut(s) 2317, 2365
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 76, 383, 798, 2550
BstSFI CTRYAG 5 cut(s) 237, 865, 1789, 2004, 2292
BstSLI GKGCMC 1 cut(s) 1681
BstUI CGCG 2 cut(s) 132, 503
BstV2I GAAGAC 1 cut(s) 2043
BstX2I RGATCY 6 cut(s) 50, 895, 1969, 1999, 2239, 2374
BstYI RGATCY 6 cut(s) 50, 895, 1969, 1999, 2239, 2374
BsuI GTATCC 1 cut(s) 2318
BtgI CCRYGG 1 cut(s) 2210
BtgZI GCGATG 1 cut(s) 1182
BtsCI GGATG 9 cut(s) 117, 171, 285, 1140, 1636, 1707, 1780, 1801, 2080
BtsI GCAGTG 2 cut(s) 261, 2301
BtsIMutI CAGTG 8 cut(s) 190, 261, 270, 1502, 1547, 1635, 1711, 2301
BveI ACCTGC 1 cut(s) 1853
Cac8I GCNNGC 6 cut(s) 130, 340, 1005, 1646, 1659, 1882
CaiI CAGNNNCTG 2 cut(s) 236, 2420
CciI TCATGA 2 cut(s) 1398, 1450
CfoI GCGC 4 cut(s) 371, 503, 864, 1944
Cfr10I RCCGGY 3 cut(s) 338, 560, 2337
Cfr13I GGNCC 1 cut(s) 1343
Csp6I GTAC 6 cut(s) 457, 853, 1734, 1900, 2311, 2512
CspCI CAANNNNNGTGG 2 cut(s) 2144, 2179
CviQI GTAC 6 cut(s) 457, 853, 1734, 1900, 2311, 2512
DraIII CACNNNGTG 2 cut(s) 430, 683
EaeI YGGCCR 3 cut(s) 133, 1307, 1577
Eam1104I CTCTTC 2 cut(s) 629, 699
EarI CTCTTC 2 cut(s) 629, 699
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 2 cut(s) 361, 1912
Eco130I CCWWGG 4 cut(s) 832, 857, 1145, 2210
Eco147I AGGCCT 5 cut(s) 826, 986, 1415, 1555, 1880
Eco24I GRGCYC 2 cut(s) 363, 1914
Eco31I GGTCTC 3 cut(s) 789, 1190, 2066
Eco47III AGCGCT 1 cut(s) 370
Eco53kI GAGCTC 2 cut(s) 361, 1912
Eco57I CTGAAG 2 cut(s) 1950, 2391
Eco88I CYCGRG 3 cut(s) 356, 1331, 1842
EcoICRI GAGCTC 2 cut(s) 361, 1912
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 4 cut(s) 832, 857, 1145, 2210
EcoT22I ATGCAT 1 cut(s) 1782
EcoT38I GRGCYC 2 cut(s) 363, 1914
ErhI CCWWGG 4 cut(s) 832, 857, 1145, 2210
Esp3I CGTCTC 1 cut(s) 437
FalI AAGNNNNNCTT 8 cut(s) 134, 166, 626, 658, 647, 679, 1418, 1450
FauNDI CATATG 1 cut(s) 2671
FbaI TGATCA 1 cut(s) 1359
FokI GGATG 9 cut(s) 104, 158, 272, 1127, 1643, 1694, 1767, 1788, 2087
FriOI GRGCYC 2 cut(s) 363, 1914
GlaI GCGC 4 cut(s) 370, 502, 863, 1943
GsaI CCCAGC 2 cut(s) 482, 1349
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 3 cut(s) 372, 865, 1945
HapII CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2552
HhaI GCGC 4 cut(s) 371, 503, 864, 1944
Hin6I GCGC 4 cut(s) 369, 501, 862, 1942
HinP1I GCGC 4 cut(s) 369, 501, 862, 1942
HindIII AAGCTT 2 cut(s) 1956, 2157
HpaII CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2552
HphI GGTGA 9 cut(s) 319, 550, 640, 752, 1601, 1881, 2108, 2490, 2566
Hpy166II GTNNAC 6 cut(s) 433, 1322, 1474, 1617, 2166, 2299
Hpy8I GTNNAC 6 cut(s) 433, 1322, 1474, 1617, 2166, 2299
HpyAV CCTTC 9 cut(s) 131, 394, 1085, 1375, 1487, 1600, 1974, 1974, 2597
HpyCH4III ACNGT 4 cut(s) 247, 265, 1405, 1506
HpyCH4IV ACGT 2 cut(s) 455, 1671
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 203, 721, 1009, 1018, 1654, 2683
HpySE526I ACGT 2 cut(s) 455, 1671
HspAI GCGC 4 cut(s) 369, 501, 862, 1942
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 1359
LmnI GCTCC 2 cut(s) 89, 2654
LweI GCATC 5 cut(s) 180, 761, 1621, 1789, 2065
MaeII ACGT 2 cut(s) 455, 1671
MaeIII GTNAC 9 cut(s) 241, 259, 451, 1096, 1297, 1589, 2096, 2272, 2704
MbiI CCGCTC 2 cut(s) 316, 2575
MfeI CAATTG 2 cut(s) 1905, 2031
MflI RGATCY 6 cut(s) 50, 895, 1969, 1999, 2239, 2374
MhlI GDGCHC 4 cut(s) 363, 525, 1681, 1914
MlsI TGGCCA 1 cut(s) 1309
MluNI TGGCCA 1 cut(s) 1309
MlyI GAGTC 4 cut(s) 601, 1104, 1717, 2540
MmeI TCCRAC 2 cut(s) 375, 2632
Mox20I TGGCCA 1 cut(s) 1309
Mph1103I ATGCAT 1 cut(s) 1782
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 2687
MscI TGGCCA 1 cut(s) 1309
MseI TTAA 6 cut(s) 720, 1275, 1418, 1769, 1857, 2082
MslI CAYNNNNRTG 2 cut(s) 1674, 2630
Msp20I TGGCCA 1 cut(s) 1309
MspA1I CMGCKG 4 cut(s) 22, 278, 2009, 2279
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 7 cut(s) 78, 339, 561, 800, 2322, 2338, 2552
MspR9I CCNGG 4 cut(s) 78, 385, 800, 2552
MunI CAATTG 2 cut(s) 1905, 2031
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 2 cut(s) 132, 503
MwoI GCNNNNNNNGC 7 cut(s) 22, 203, 721, 1009, 1018, 1654, 2683
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 3 cut(s) 78, 800, 2552
NcoI CCATGG 1 cut(s) 2210
NdeI CATATG 1 cut(s) 2671
NgoMIV GCCGGC 1 cut(s) 338
NlaIV GGNNCC 3 cut(s) 897, 1498, 2001
NmeAIII GCCGAG 1 cut(s) 1555
NmuCI GTSAC 5 cut(s) 451, 1096, 1589, 2096, 2704
NsiI ATGCAT 1 cut(s) 1782
NspI RCATGY 2 cut(s) 2317, 2365
OliI CACNNNNGTG 1 cut(s) 1674
PaeR7I CTCGAG 2 cut(s) 356, 1842
PagI TCATGA 2 cut(s) 1398, 1450
PaqCI CACCTGC 1 cut(s) 1853
PceI AGGCCT 5 cut(s) 826, 986, 1415, 1555, 1880
PciI ACATGT 1 cut(s) 2313
PcsI WCGNNNNNNNCGW 2 cut(s) 452, 456
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 2687
PfeI GAWTC 8 cut(s) 639, 1076, 1685, 1869, 2107, 2138, 2449, 2696
Pfl23II CGTACG 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 1586
Ple19I CGATCG 1 cut(s) 450
PleI GAGTC 4 cut(s) 601, 1103, 1717, 2539
PpsI GAGTC 4 cut(s) 601, 1103, 1717, 2539
Ppu21I YACGTR 1 cut(s) 456
PscI ACATGT 1 cut(s) 2313
PshAI GACNNNNGTC 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 1857
Psp124BI GAGCTC 2 cut(s) 363, 1914
Psp6I CCWGG 1 cut(s) 383
PspFI CCCAGC 2 cut(s) 478, 1345
PspGI CCWGG 1 cut(s) 383
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 897, 1498, 2001
PspPI GGNCC 1 cut(s) 1343
PstI CTGCAG 3 cut(s) 241, 869, 2296
PstNI CAGNNNCTG 2 cut(s) 236, 2420
PsuI RGATCY 6 cut(s) 50, 895, 1969, 1999, 2239, 2374
PvuI CGATCG 1 cut(s) 450
PvuII CAGCTG 3 cut(s) 22, 2009, 2279
RsaI GTAC 6 cut(s) 458, 854, 1735, 1901, 2312, 2513
RsaNI GTAC 6 cut(s) 457, 853, 1734, 1900, 2311, 2512
RseI CAYNNNNRTG 2 cut(s) 1674, 2630
SacI GAGCTC 2 cut(s) 363, 1914
SaqAI TTAA 6 cut(s) 720, 1275, 1418, 1769, 1857, 2082
Sau96I GGNCC 1 cut(s) 1343
ScaI AGTACT 1 cut(s) 1901
SchI GAGTC 4 cut(s) 601, 1104, 1717, 2540
ScrFI CCNGG 4 cut(s) 78, 385, 800, 2552
SduI GDGCHC 4 cut(s) 363, 525, 1681, 1914
SfaNI GCATC 5 cut(s) 180, 761, 1621, 1789, 2065
SfcI CTRYAG 5 cut(s) 237, 865, 1789, 2004, 2292
Sfr274I CTCGAG 2 cut(s) 356, 1842
SlaI CTCGAG 2 cut(s) 356, 1842
SmiMI CAYNNNNRTG 2 cut(s) 1674, 2630
SmlI CTYRAG 5 cut(s) 151, 356, 719, 1022, 1842
SmoI CTYRAG 5 cut(s) 151, 356, 719, 1022, 1842
SseBI AGGCCT 5 cut(s) 826, 986, 1415, 1555, 1880
SsiI CCGC 7 cut(s) 87, 132, 278, 314, 503, 1923, 2575
SstI GAGCTC 2 cut(s) 363, 1914
StuI AGGCCT 5 cut(s) 826, 986, 1415, 1555, 1880
StyD4I CCNGG 4 cut(s) 76, 383, 798, 2550
StyI CCWWGG 4 cut(s) 832, 857, 1145, 2210
TaaI ACNGT 4 cut(s) 247, 265, 1405, 1506
TaiI ACGT 2 cut(s) 458, 1674
TaqI TCGA 8 cut(s) 318, 357, 552, 1255, 1762, 1843, 2353, 2571
TatI WGTACW 4 cut(s) 1733, 1899, 2310, 2511
TauI GCSGC 3 cut(s) 135, 281, 1925
TfiI GAWTC 8 cut(s) 639, 1076, 1685, 1869, 2107, 2138, 2449, 2696
Tru1I TTAA 6 cut(s) 720, 1275, 1418, 1769, 1857, 2082
Tru9I TTAA 6 cut(s) 720, 1275, 1418, 1769, 1857, 2082
TscAI CASTG 8 cut(s) 190, 261, 270, 1509, 1554, 1642, 1718, 2301
TseFI GTSAC 5 cut(s) 451, 1096, 1589, 2096, 2704
Tsp45I GTSAC 5 cut(s) 451, 1096, 1589, 2096, 2704
TspGWI ACGGA 3 cut(s) 164, 1316, 1802
TspRI CASTG 8 cut(s) 190, 261, 270, 1509, 1554, 1642, 1718, 2301
Van91I CCANNNNNTGG 1 cut(s) 1586
Vha464I CTTAAG 1 cut(s) 719
VspI ATTAAT 1 cut(s) 1857
XapI RAATTY 3 cut(s) 1223, 1247, 2587
XceI RCATGY 2 cut(s) 2317, 2365
XcmI CCANNNNNNNNNTGG 2 cut(s) 391, 600
XhoI CTCGAG 2 cut(s) 356, 1842
XmaJI CCTAGG 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 2687
ZrmI AGTACT 1 cut(s) 1901
Zsp2I ATGCAT 1 cut(s) 1782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.