Rroxscaffold_3G00242740

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
35209711 .. 35215487
5777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242740.1

Sequence Viewer

Length: 2688 bp
ATGACGATCAACTCTCTGCTGCAAAAGCCGACCTCCCCCTCCTCCTTCTCCTCCTCTTTGCCCGTAACATACACAAAAAATAGCATTCTTGCCGCTTCTGTTGAGGTTGAAGAACCTGAAGCCGCACGTACGAATACTAGTACTTCATCAGCAGAGAATAATAAAAATAATGAGGCAGTTACGGTAAAGGCAGTGGTTACAGTGAAAATAACAGCGGGAAGCCTGCTCTCCAACTTGTTTGGTTTGACAGCACCCCTCGATCTTTTCACTGATTTGCTCGGGAAAACCTTTCTTCTTGAGCTGGTTAGCACCGAGCTTGACCCTGATACTGGATTGGAGCAGAAACCAATCCAGGGATATGCGCACAAAGTGACCAGAATTGACGACGAGGTGAAGTATGAGAGCTCCTTCACTCTCCCAGCGGGTTTCGGAGAGGTGGGAGCTGTTCTGTTTGAAAATCAGCACCACGAGGAGCTTTACATCAAGACCATACATTTACACATCAATGGCTTCCCAGACCCTTCTGTGGTTACTGTCCCTTGTGATTCATGGGCTCACTCCAAGTATGTCAATCCAGACAAGAGAATCTTCTTCACCAGCAAGTCTTACTTACCATCAGAGACACCAAGTGGGTTGAAGAGGCTAAGAGAACTGGAGCTGCAATATTTGCAAGGAAATGGGGAGGGTGAAAGAAAAACGTCCGACAGGATTTATGATTATGATACATACAATGACCTTGGAAATCCTGATAGCGAAGATGATTTGGCCAGGCCCGTGCTTGGCGGCAAAGAGCATCCATACCCGAGGCGCTGCAGAACAGGACGACCACGCACCAAAAAGGATCCATTGTCGGAGGAAAGAAGCAGTAGTGTGTACGTACCAAGAGATGAAGCTTTCGCAGAGGTGAAACAACTAACATTTGCGGCAAAGACCCTGAAATCCGTGCTGCACGCATTGCTCCCGCAGCTTGAGATGTCACTTATTAATCCAAACCTAGGATTTCCCTACTTCACAGCCATAGATTCGCTGTTTAATGAAGGAGTCACAATGCCTAAGCCAAAAACTAGTGGGCTTTTTCAGTCCATCATCCCAAGGCTAGTGAAGGCTGTTAGTGACAGCCAAGACGATCTTTTGCTCTTTGAGACCCCTGAAATAATCGATCGTGATAAATTTTCCTGGTTTAGAGATGAAGAATTTTCCCGGCAAACTCTAGCTGGTCTTAATCCATTTAGTATAGAGCTAGTCAAGGAGTGGCCATTGAAAAGTAAACTGGACCCCAAAATTTATGGTCCTCCTGAATCATTGATCACAACAGAACTTGTGGAGAAAGAAATCCGAGGTTGTATGACTGTCAATGAGGCCTTGAAAAGAAAGAAGATGTTTATATTGGATTATCATGATCTGCTCATGCCTTATGTAAACAAAGTGAGAGAGATTGAAGGGACCACATTGTATGGTTCGAGGACACTGTTCTTCCTCACTAAAGAAGGCACATTGAGGCTTGTTGCCATTGAACTAACTCGCCCACCTGTTGGTGACAAGCCACAATGGAAGCAAGTGTTTACTCCCACATGGGATGCCACTGGATGCTGGCTGTGGAGACTCGCTAAAGCGCATGTTTGTGCTCATGATGCTGGCTATCATCAGCTTGTCATCCACTGGCTGAGAACTCATTGTTGTACGGAGCCATACATAATTGCCGCCAATCGCCAATTAAGTGCAATGCATCCCATCTATAGACTTCTACTTCCTCATTTTCGGTACACAATGGAAATCAATGCCCTGGCTCGAGAAAGCCTCATCAATGCAGGTGGAATCATTGAGACCTCCTTCTCACCGGCAAAGTACTCCATTGAGCTCAGTTCAGCTGCTTATGACAAGTTCTGGCGCTTTGACACAGAAGCTTTGCCAGCAGATTTGATCAGAAGGGGAATGGCAGTTGAGGATCCCACAGCTGAGCATGGCTTAAAGCTAACGATTGAAGACTACCCATTTGCAAATGATGGTCTTATTCTTTGGGATGCTATTAAGGAGTGGGTGAGGGACTATGTGAACCACTACTATGCATACCCAGCTCTTATTGAGAATGATCAAGAGCTTCAAGCTTGGTGGACAGAAGTTAGAACAAAAGGCCACGCTGACAAAAAGGATGAGCCATGGTGGCCAGTTCTGAATACCCAAGATAACCTAATACATGTTTTGACAACAATAATTTGGGTAACAGCTGGTCATCATGCAGCGGTAAACTTTGGCCAGTATATGTATGCCGGATACTTTCCAAATCGACCTACAATAGCTCGAACCAACATGCCAACTGAAGATCCATCTGAGGAGTATTTCAACAACTTTTTGAAGAAGCCGGAGTCTGCATTGCTAATGTGCTTCCCGTCACAGATTCAAGCAACCAAAGTGATGGCTGTCTTAGACGTGTTATCGAACCATTCACCTGATGAAGAGTATCTTGGTGAGAAAATGGAGTCCTCTTGGGCTGAAAATCCTGTCATCAAGGCTGCATTTGAGCGCTTCAATGGGAATTTGAAAAAGCTAGAAGCAATAATTGATGAGAGGAATACTAATATAAACCTGAAAAACAGAGTTGGAGCAGGGGTGGTTCCATATGAGCTTTTGAAGCCATTCTCAAAGCCTGGGGTCACAGGAATGGGAGTTCCTAATAGTATTTCAATTTGA

Protein Analysis

895

Amino Acids

101.32

Weight (kDa)

5.65

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 130 - 198 6.1e-06 PLAT/LH2 domain
Lipoxygenase PF00305 211 - 878 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1799
Acc16I TGCGCA 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 1799
AccB7I CCANNNNNTGG 1 cut(s) 1532
AciI CCGC 9 cut(s) 93, 123, 215, 422, 783, 923, 962, 1701, 2240
AclWI GGATC 5 cut(s) 836, 849, 1940, 1953, 2315
AcoI YGGCCR 4 cut(s) 765, 1253, 2162, 2251
AcsI RAATTY 4 cut(s) 1169, 1193, 1281, 2533
AcuI CTGAAG 2 cut(s) 138, 2337
AdeI CACNNNGTG 2 cut(s) 370, 629
AfaI GTAC 7 cut(s) 130, 142, 875, 879, 1681, 1763, 1847
AfeI AGCGCT 1 cut(s) 2522
AfiI CCNNNNNNNGG 6 cut(s) 329, 353, 526, 779, 995, 1532
AflIII ACRYGT 2 cut(s) 2194, 2427
AhlI ACTAGT 2 cut(s) 137, 1064
AjiI CACGTC 1 cut(s) 2428
AjnI CCWGG 5 cut(s) 351, 767, 1175, 1782, 2644
AjuI GAANNNNNNNTTGG 2 cut(s) 2445, 2477
AloI GAACNNNNNNTCC 2 cut(s) 2649, 2681
Alw21I GWGCWC 3 cut(s) 407, 1627, 1860
Alw26I GTCTC 4 cut(s) 614, 1136, 1594, 1817
AlwI GGATC 5 cut(s) 836, 849, 1940, 1953, 2315
Ama87I CYCGRG 3 cut(s) 278, 802, 1788
Aor51HI AGCGCT 1 cut(s) 2522
AoxI GGCC 7 cut(s) 765, 770, 1253, 1359, 2131, 2162, 2251
ApeKI GCWGC 8 cut(s) 19, 658, 810, 946, 964, 1868, 2237, 2510
ApoI RAATTY 4 cut(s) 1169, 1193, 1281, 2533
ArsI GACNNNNNNTTYG 2 cut(s) 1976, 2008
AseI ATTAAT 1 cut(s) 984
Asp700I GAANNNNTTC 1 cut(s) 2633
AspA2I CCTAGG 1 cut(s) 994
AspLEI GCGC 5 cut(s) 364, 810, 1615, 1890, 2523
AspS9I GGNCC 4 cut(s) 771, 1273, 1289, 1443
AsuC2I CCSGG 1 cut(s) 1201
AsuHPI GGTGA 9 cut(s) 403, 586, 698, 916, 1547, 1827, 2050, 2436, 2477
AvaI CYCGRG 3 cut(s) 278, 802, 1788
AvaII GGWCC 3 cut(s) 1273, 1289, 1443
AvrII CCTAGG 1 cut(s) 994
BalI TGGCCA 4 cut(s) 767, 1255, 2164, 2253
BamHI GGATCC 2 cut(s) 841, 1945
BanII GRGCYC 3 cut(s) 407, 556, 1860
BauI CACGAG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 1989
Bbv12I GWGCWC 3 cut(s) 407, 1627, 1860
BbvI GCAGC 8 cut(s) 6, 645, 797, 933, 976, 1855, 2249, 2497
BccI CCATC 6 cut(s) 622, 1091, 1739, 1997, 2332, 2407
BciT130I CCWGG 5 cut(s) 353, 769, 1177, 1784, 2646
BciVI GTATCC 1 cut(s) 2264
BclI TGATCA 3 cut(s) 1305, 1920, 2089
BcnI CCSGG 1 cut(s) 1201
BcoDI GTCTC 4 cut(s) 614, 1136, 1594, 1817
BcuI ACTAGT 2 cut(s) 137, 1064
BfaI CTAG 7 cut(s) 138, 995, 1065, 1097, 1211, 1241, 2546
BfmI CTRYAG 2 cut(s) 811, 1735
BfoI RGCGCY 3 cut(s) 811, 1891, 2524
BfuAI ACCTGC 1 cut(s) 1799
BfuI GTATCC 1 cut(s) 2264
BglI GCCNNNNNGGC 1 cut(s) 2161
BlnI CCTAGG 1 cut(s) 994
BlpI GCTNAGC 1 cut(s) 1956
BmcAI AGTACT 2 cut(s) 142, 1847
Bme1390I CCNGG 6 cut(s) 353, 769, 1177, 1201, 1784, 2646
Bme18I GGWCC 3 cut(s) 1273, 1289, 1443
BmeT110I CYCGRG 3 cut(s) 278, 802, 1788
BmgBI CACGTC 1 cut(s) 2428
BmgT120I GGNCC 4 cut(s) 771, 1273, 1289, 1443
BmiI GGNNCC 6 cut(s) 843, 1275, 1444, 1686, 1947, 2613
BmrFI CCNGG 6 cut(s) 353, 769, 1177, 1201, 1784, 2646
BmsI GCATC 6 cut(s) 802, 1567, 1577, 1621, 1735, 2011
BpiI GAAGAC 1 cut(s) 1989
BplI GAGNNNNNCTC 2 cut(s) 1782, 1814
BpmI CTGGAG 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 1053
Bpu1102I GCTNAGC 1 cut(s) 1956
BpuEI CTTGAG 2 cut(s) 317, 989
BpuMI CCSGG 1 cut(s) 1201
Bsa29I ATCGAT 1 cut(s) 1158
BsaAI YACGTR 2 cut(s) 128, 877
BsaI GGTCTC 2 cut(s) 1136, 1817
BsaJI CCNNGG 9 cut(s) 352, 736, 803, 994, 1091, 1336, 1782, 2156, 2645
BsaXI ACNNNNNCTCC 2 cut(s) 2592, 2622
Bsc4I CCNNNNNNNGG 6 cut(s) 329, 353, 526, 779, 995, 1532
Bse118I RCCGGY 1 cut(s) 1837
Bse1I ACTGG 7 cut(s) 334, 657, 1275, 1588, 1664, 2165, 2254
Bse3DI GCAATG 3 cut(s) 953, 1728, 2369
BseBI CCWGG 5 cut(s) 353, 769, 1177, 1784, 2646
BseCI ATCGAT 1 cut(s) 1158
BseDI CCNNGG 9 cut(s) 352, 736, 803, 994, 1091, 1336, 1782, 2156, 2645
BseGI GGATG 8 cut(s) 793, 1086, 1582, 1592, 1653, 1726, 2026, 2155
BseLI CCNNNNNNNGG 6 cut(s) 329, 353, 526, 779, 995, 1532
BseMI GCAATG 3 cut(s) 953, 1728, 2369
BseMII CTCAG 4 cut(s) 1655, 1873, 1947, 2319
BseNI ACTGG 7 cut(s) 334, 657, 1275, 1588, 1664, 2165, 2254
BseRI GAGGAG 5 cut(s) 31, 40, 43, 485, 2345
BseXI GCAGC 8 cut(s) 6, 645, 797, 933, 976, 1855, 2249, 2497
BseYI CCCAGC 2 cut(s) 418, 2071
BsgI GTGCAG 1 cut(s) 932
Bsh1285I CGRYCG 1 cut(s) 1162
BshFI GGCC 7 cut(s) 767, 772, 1255, 1361, 2133, 2164, 2253
BshVI ATCGAT 1 cut(s) 1158
BsiEI CGRYCG 1 cut(s) 1162
BsiHKAI GWGCWC 3 cut(s) 407, 1627, 1860
BsiHKCI CYCGRG 3 cut(s) 278, 802, 1788
BsiSI CCGG 4 cut(s) 1201, 1838, 2268, 2360
BsiWI CGTACG 1 cut(s) 128
BslFI GGGAC 3 cut(s) 521, 1456, 2057
BslI CCNNNNNNNGG 6 cut(s) 329, 353, 526, 779, 995, 1532
BsmAI GTCTC 4 cut(s) 614, 1136, 1594, 1817
BsmFI GGGAC 3 cut(s) 521, 1456, 2057
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 7 cut(s) 767, 772, 1255, 1361, 2133, 2164, 2253
Bso31I GGTCTC 2 cut(s) 1136, 1817
BsoBI CYCGRG 3 cut(s) 278, 802, 1788
Bsp1286I GDGCHC 4 cut(s) 407, 556, 1627, 1860
Bsp1720I GCTNAGC 1 cut(s) 1956
Bsp19I CCATGG 1 cut(s) 2156
BspACI CCGC 9 cut(s) 93, 123, 215, 422, 783, 923, 962, 1701, 2240
BspANI GGCC 7 cut(s) 767, 772, 1255, 1361, 2133, 2164, 2253
BspCNI CTCAG 4 cut(s) 1656, 1872, 1948, 2320
BspDI ATCGAT 1 cut(s) 1158
BspHI TCATGA 2 cut(s) 1396, 1627
BspLI GGNNCC 6 cut(s) 843, 1275, 1444, 1686, 1947, 2613
BspMAI CTGCAG 1 cut(s) 815
BspMI ACCTGC 1 cut(s) 1799
BspPI GGATC 5 cut(s) 836, 849, 1940, 1953, 2315
BspTNI GGTCTC 2 cut(s) 1136, 1817
BsrDI GCAATG 3 cut(s) 953, 1728, 2369
BsrFI RCCGGY 1 cut(s) 1837
BsrI ACTGG 7 cut(s) 334, 657, 1275, 1588, 1664, 2165, 2254
BssAI RCCGGY 1 cut(s) 1837
BssECI CCNNGG 9 cut(s) 352, 736, 803, 994, 1091, 1336, 1782, 2156, 2645
BssSI CACGAG 1 cut(s) 467
BssT1I CCWWGG 4 cut(s) 736, 994, 1091, 2156
Bst2BI CACGAG 1 cut(s) 467
Bst2UI CCWGG 5 cut(s) 353, 769, 1177, 1784, 2646
Bst4CI ACNGT 5 cut(s) 184, 202, 535, 1351, 1470
Bst6I CTCTTC 2 cut(s) 632, 2448
BstAPI GCANNNNNTGC 2 cut(s) 667, 955
BstBAI YACGTR 2 cut(s) 128, 877
BstC8I GCNNGC 5 cut(s) 224, 951, 1592, 1636, 1911
BstDEI CTNAG 7 cut(s) 644, 1053, 1664, 1859, 1956, 2328, 2422
BstDSI CCRYGG 1 cut(s) 2156
BstF5I GGATG 8 cut(s) 793, 1086, 1582, 1592, 1653, 1726, 2026, 2155
BstH2I RGCGCY 3 cut(s) 811, 1891, 2524
BstHHI GCGC 5 cut(s) 364, 810, 1615, 1890, 2523
BstMAI GTCTC 4 cut(s) 614, 1136, 1594, 1817
BstMCI CGRYCG 1 cut(s) 1162
BstMWI GCNNNNNNNGC 9 cut(s) 25, 667, 955, 964, 1631, 1910, 2072, 2161, 2629
BstNI CCWGG 5 cut(s) 353, 769, 1177, 1784, 2646
BstNSI RCATGY 3 cut(s) 1619, 2198, 2311
BstSCI CCNGG 6 cut(s) 351, 767, 1175, 1199, 1782, 2644
BstSFI CTRYAG 2 cut(s) 811, 1735
BstSNI TACGTA 1 cut(s) 877
BstV1I GCAGC 8 cut(s) 6, 645, 797, 933, 976, 1855, 2249, 2497
BstV2I GAAGAC 1 cut(s) 1989
BstX2I RGATCY 3 cut(s) 841, 1945, 2320
BstXI CCANNNNNNTGG 1 cut(s) 2413
BstYI RGATCY 3 cut(s) 841, 1945, 2320
Bsu15I ATCGAT 1 cut(s) 1158
BsuI GTATCC 1 cut(s) 2264
BsuRI GGCC 7 cut(s) 767, 772, 1255, 1361, 2133, 2164, 2253
BsuTUI ATCGAT 1 cut(s) 1158
BtgI CCRYGG 1 cut(s) 2156
BtrI CACGTC 1 cut(s) 2428
BtsCI GGATG 8 cut(s) 793, 1086, 1582, 1592, 1653, 1726, 2026, 2155
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 6 cut(s) 198, 207, 267, 1466, 1581, 1657
BveI ACCTGC 1 cut(s) 1799
Cac8I GCNNGC 5 cut(s) 224, 951, 1592, 1636, 1911
CciI TCATGA 2 cut(s) 1396, 1627
CfoI GCGC 5 cut(s) 364, 810, 1615, 1890, 2523
Cfr10I RCCGGY 1 cut(s) 1837
Cfr13I GGNCC 4 cut(s) 771, 1273, 1289, 1443
ClaI ATCGAT 1 cut(s) 1158
Csp6I GTAC 7 cut(s) 129, 141, 874, 878, 1680, 1762, 1846
CspCI CAANNNNNGTGG 4 cut(s) 1792, 1827, 2090, 2125
CviQI GTAC 7 cut(s) 129, 141, 874, 878, 1680, 1762, 1846
DdeI CTNAG 7 cut(s) 644, 1053, 1664, 1859, 1956, 2328, 2422
DraIII CACNNNGTG 2 cut(s) 370, 629
EaeI YGGCCR 4 cut(s) 765, 1253, 2162, 2251
Eam1104I CTCTTC 2 cut(s) 632, 2448
EarI CTCTTC 2 cut(s) 632, 2448
Ecl136II GAGCTC 2 cut(s) 405, 1858
Eco105I TACGTA 1 cut(s) 877
Eco130I CCWWGG 4 cut(s) 736, 994, 1091, 2156
Eco147I AGGCCT 1 cut(s) 1361
Eco24I GRGCYC 3 cut(s) 407, 556, 1860
Eco31I GGTCTC 2 cut(s) 1136, 1817
Eco47I GGWCC 3 cut(s) 1273, 1289, 1443
Eco47III AGCGCT 1 cut(s) 2522
Eco53kI GAGCTC 2 cut(s) 405, 1858
Eco57I CTGAAG 2 cut(s) 138, 2337
Eco88I CYCGRG 3 cut(s) 278, 802, 1788
EcoICRI GAGCTC 2 cut(s) 405, 1858
EcoRII CCWGG 5 cut(s) 351, 767, 1175, 1782, 2644
EcoT14I CCWWGG 4 cut(s) 736, 994, 1091, 2156
EcoT22I ATGCAT 2 cut(s) 1728, 2068
EcoT38I GRGCYC 3 cut(s) 407, 556, 1860
ErhI CCWWGG 4 cut(s) 736, 994, 1091, 2156
FalI AAGNNNNNCTT 8 cut(s) 572, 604, 593, 625, 1113, 1145, 2445, 2477
FaqI GGGAC 3 cut(s) 521, 1456, 2057
FauI CCCGC 3 cut(s) 208, 415, 969
FauNDI CATATG 1 cut(s) 2617
FbaI TGATCA 3 cut(s) 1305, 1920, 2089
FokI GGATG 8 cut(s) 780, 1073, 1589, 1599, 1640, 1713, 2033, 2162
FriOI GRGCYC 3 cut(s) 407, 556, 1860
FspAI RTGCGCAY 1 cut(s) 363
FspBI CTAG 7 cut(s) 138, 995, 1065, 1097, 1211, 1241, 2546
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 5 cut(s) 363, 809, 1614, 1889, 2522
GsaI CCCAGC 2 cut(s) 422, 2075
GsuI CTGGAG 1 cut(s) 674
HaeII RGCGCY 3 cut(s) 811, 1891, 2524
HaeIII GGCC 7 cut(s) 767, 772, 1255, 1361, 2133, 2164, 2253
HapII CCGG 4 cut(s) 1201, 1838, 2268, 2360
HhaI GCGC 5 cut(s) 364, 810, 1615, 1890, 2523
Hin6I GCGC 5 cut(s) 362, 808, 1613, 1888, 2521
HinP1I GCGC 5 cut(s) 362, 808, 1613, 1888, 2521
HindIII AAGCTT 3 cut(s) 891, 1902, 2103
HpaII CCGG 4 cut(s) 1201, 1838, 2268, 2360
HphI GGTGA 9 cut(s) 403, 586, 698, 916, 1547, 1827, 2050, 2436, 2477
Hpy166II GTNNAC 8 cut(s) 874, 1268, 1420, 1563, 1764, 2053, 2112, 2245
Hpy188I TCNGA 8 cut(s) 431, 619, 703, 853, 1337, 1925, 2172, 2329
Hpy8I GTNNAC 8 cut(s) 874, 1268, 1420, 1563, 1764, 2053, 2112, 2245
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 9 cut(s) 55, 418, 531, 1031, 1096, 1433, 1481, 1840, 1920
HpyCH4III ACNGT 5 cut(s) 184, 202, 535, 1351, 1470
HpyCH4IV ACGT 4 cut(s) 127, 698, 876, 2427
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 667, 955, 964, 1631, 1910, 2072, 2161, 2629
HpyF3I CTNAG 7 cut(s) 644, 1053, 1664, 1859, 1956, 2328, 2422
HpySE526I ACGT 4 cut(s) 127, 698, 876, 2427
HspAI GCGC 5 cut(s) 362, 808, 1613, 1888, 2521
Ksp22I TGATCA 3 cut(s) 1305, 1920, 2089
LmnI GCTCC 8 cut(s) 337, 410, 440, 472, 655, 963, 1684, 2600
Lsp1109I GCAGC 8 cut(s) 6, 645, 797, 933, 976, 1855, 2249, 2497
LweI GCATC 6 cut(s) 802, 1567, 1577, 1621, 1735, 2011
MaeI CTAG 7 cut(s) 138, 995, 1065, 1097, 1211, 1241, 2546
MaeII ACGT 4 cut(s) 127, 698, 876, 2427
MflI RGATCY 3 cut(s) 841, 1945, 2320
MhlI GDGCHC 4 cut(s) 407, 556, 1627, 1860
MlsI TGGCCA 4 cut(s) 767, 1255, 2164, 2253
MluNI TGGCCA 4 cut(s) 767, 1255, 2164, 2253
MlyI GAGTC 4 cut(s) 1050, 1596, 2372, 2486
MmeI TCCRAC 4 cut(s) 255, 726, 831, 2578
Mox20I TGGCCA 4 cut(s) 767, 1255, 2164, 2253
Mph1103I ATGCAT 2 cut(s) 1728, 2068
MroXI GAANNNNTTC 1 cut(s) 2633
MscI TGGCCA 4 cut(s) 767, 1255, 2164, 2253
MseI TTAA 6 cut(s) 984, 1032, 1221, 1715, 1967, 2028
MslI CAYNNNNRTG 4 cut(s) 504, 1620, 2061, 2657
Msp20I TGGCCA 4 cut(s) 767, 1255, 2164, 2253
MspA1I CMGCKG 6 cut(s) 215, 422, 1868, 1955, 2225, 2240
MspI CCGG 4 cut(s) 1201, 1838, 2268, 2360
MspR9I CCNGG 6 cut(s) 353, 769, 1177, 1201, 1784, 2646
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 5 cut(s) 353, 769, 1177, 1784, 2646
MwoI GCNNNNNNNGC 9 cut(s) 25, 667, 955, 964, 1631, 1910, 2072, 2161, 2629
NciI CCSGG 1 cut(s) 1201
NcoI CCATGG 1 cut(s) 2156
NdeI CATATG 1 cut(s) 2617
NlaIV GGNNCC 6 cut(s) 843, 1275, 1444, 1686, 1947, 2613
NmuCI GTSAC 7 cut(s) 370, 975, 1042, 1112, 1535, 2388, 2650
NsbI TGCGCA 1 cut(s) 363
NsiI ATGCAT 2 cut(s) 1728, 2068
NspI RCATGY 3 cut(s) 1619, 2198, 2311
PaeR7I CTCGAG 1 cut(s) 1788
PagI TCATGA 2 cut(s) 1396, 1627
PaqCI CACCTGC 1 cut(s) 1799
PceI AGGCCT 1 cut(s) 1361
PciI ACATGT 1 cut(s) 2194
PctI GAATGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 2633
PfeI GAWTC 6 cut(s) 545, 585, 1022, 1298, 1815, 2395
Pfl23II CGTACG 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 1532
Ple19I CGATCG 1 cut(s) 1162
PleI GAGTC 4 cut(s) 1049, 1596, 2371, 2485
PpsI GAGTC 4 cut(s) 1049, 1596, 2371, 2485
Ppu21I YACGTR 2 cut(s) 128, 877
PscI ACATGT 1 cut(s) 2194
PshBI ATTAAT 1 cut(s) 984
Psp124BI GAGCTC 2 cut(s) 407, 1860
Psp6I CCWGG 5 cut(s) 351, 767, 1175, 1782, 2644
PspFI CCCAGC 2 cut(s) 418, 2071
PspGI CCWGG 5 cut(s) 351, 767, 1175, 1782, 2644
PspLI CGTACG 1 cut(s) 128
PspN4I GGNNCC 6 cut(s) 843, 1275, 1444, 1686, 1947, 2613
PspPI GGNCC 4 cut(s) 771, 1273, 1289, 1443
PstI CTGCAG 1 cut(s) 815
PsuI RGATCY 3 cut(s) 841, 1945, 2320
PvuI CGATCG 1 cut(s) 1162
PvuII CAGCTG 3 cut(s) 1868, 1955, 2225
RsaI GTAC 7 cut(s) 130, 142, 875, 879, 1681, 1763, 1847
RsaNI GTAC 7 cut(s) 129, 141, 874, 878, 1680, 1762, 1846
RseI CAYNNNNRTG 4 cut(s) 504, 1620, 2061, 2657
SacI GAGCTC 2 cut(s) 407, 1860
SaqAI TTAA 6 cut(s) 984, 1032, 1221, 1715, 1967, 2028
Sau96I GGNCC 4 cut(s) 771, 1273, 1289, 1443
ScaI AGTACT 2 cut(s) 142, 1847
SchI GAGTC 4 cut(s) 1050, 1596, 2372, 2486
ScrFI CCNGG 6 cut(s) 353, 769, 1177, 1201, 1784, 2646
SduI GDGCHC 4 cut(s) 407, 556, 1627, 1860
SfaNI GCATC 6 cut(s) 802, 1567, 1577, 1621, 1735, 2011
SfcI CTRYAG 2 cut(s) 811, 1735
Sfr274I CTCGAG 1 cut(s) 1788
SinI GGWCC 3 cut(s) 1273, 1289, 1443
SlaI CTCGAG 1 cut(s) 1788
SmiMI CAYNNNNRTG 4 cut(s) 504, 1620, 2061, 2657
SmlI CTYRAG 3 cut(s) 296, 968, 1788
SmoI CTYRAG 3 cut(s) 296, 968, 1788
SnaBI TACGTA 1 cut(s) 877
SpeI ACTAGT 2 cut(s) 137, 1064
SseBI AGGCCT 1 cut(s) 1361
SsiI CCGC 9 cut(s) 93, 123, 215, 422, 783, 923, 962, 1701, 2240
SspI AATATT 1 cut(s) 665
SspMI CTAG 7 cut(s) 138, 995, 1065, 1097, 1211, 1241, 2546
SstI GAGCTC 2 cut(s) 407, 1860
StuI AGGCCT 1 cut(s) 1361
StyD4I CCNGG 6 cut(s) 351, 767, 1175, 1199, 1782, 2644
StyI CCWWGG 4 cut(s) 736, 994, 1091, 2156
TaaI ACNGT 5 cut(s) 184, 202, 535, 1351, 1470
TaiI ACGT 4 cut(s) 130, 701, 879, 2430
TaqI TCGA 7 cut(s) 258, 1158, 1460, 1789, 2284, 2299, 2435
TatI WGTACW 2 cut(s) 140, 1845
TauI GCSGC 5 cut(s) 95, 125, 786, 926, 1703
TfiI GAWTC 6 cut(s) 545, 585, 1022, 1298, 1815, 2395
Tru1I TTAA 6 cut(s) 984, 1032, 1221, 1715, 1967, 2028
Tru9I TTAA 6 cut(s) 984, 1032, 1221, 1715, 1967, 2028
TscAI CASTG 6 cut(s) 198, 207, 274, 1473, 1588, 1664
TseFI GTSAC 7 cut(s) 370, 975, 1042, 1112, 1535, 2388, 2650
TseI GCWGC 8 cut(s) 19, 658, 810, 946, 964, 1868, 2237, 2510
Tsp45I GTSAC 7 cut(s) 370, 975, 1042, 1112, 1535, 2388, 2650
TspDTI ATGAA 6 cut(s) 135, 537, 903, 1050, 1203, 2466
TspGWI ACGGA 2 cut(s) 931, 1697
TspRI CASTG 6 cut(s) 198, 207, 274, 1473, 1588, 1664
Van91I CCANNNNNTGG 1 cut(s) 1532
VpaK11BI GGWCC 3 cut(s) 1273, 1289, 1443
VspI ATTAAT 1 cut(s) 984
XapI RAATTY 4 cut(s) 1169, 1193, 1281, 2533
XceI RCATGY 3 cut(s) 1619, 2198, 2311
XhoI CTCGAG 1 cut(s) 1788
XmaJI CCTAGG 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 2633
XspI CTAG 7 cut(s) 138, 995, 1065, 1097, 1211, 1241, 2546
ZrmI AGTACT 2 cut(s) 142, 1847
Zsp2I ATGCAT 2 cut(s) 1728, 2068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.