Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390647.1

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1216

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 797 bp

ttcaggttgagaatgagcaccacaaggaggcttacatcaagagtatcgagatcaccggcttcccaaatggcacctctgtcactgttccatgtaattcatggactcattccaagtctgataataagcagaagagaatctttttcaccaacaagtcttacttaccatcagagacaccaagtgggatcaaaaggctaagagaagaagagctgcagcttctacgaggaaatggcgagggtgaaaggaaagcatctgaaaggatttacgattatgatacatacaatgatcttggagacccggatagcaaagacgagttggctaggcctgtccttggtggcaaagaccacccgtaccctaggcgttgcagaactggacgaccacgcactaaaaaggatccattgtcagaggaaagaagtagtagcgtgtatgtgccaagagatgaagcgtttgcagagttgaaacaactcacattctctggaaagaccctgaaatctgtgctgcacgcattgcttcctcagcttgagataacacttgttgatccagagctaggatttccctatttcacagccatagattcattattcaatgaaggagtcacattgcctaagccaaaatctagtggcttttttcagtcaatcatcccaaggctagtcaaggcaattagggatggacaagatgatctcttgctctttgagacccctgaaatacttgatcgtgataaattttcttggttcaaagatgaagaattttctcggcaaactctagctggtcttaatccatatagcatagaactagttacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

265

Amino Acids

30.26

Weight (kDa)

5.86

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AclWI	GGATC	4 cut(s)	190, 385, 398, 529
AcsI	RAATTY	2 cut(s)	718, 742
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	27, 328, 544
AgsI	TTSAA	3 cut(s)	456, 582, 732
AhlI	ACTAGT	1 cut(s)	789
AluBI	AGCT	5 cut(s)	207, 213, 516, 543, 763
AluI	AGCT	5 cut(s)	207, 213, 516, 543, 763
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	163, 284, 685
AlwI	GGATC	4 cut(s)	190, 385, 398, 529
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	207, 210, 495
ApoI	RAATTY	2 cut(s)	718, 742
AspA2I	CCTAGG	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	45, 135, 247
AvrII	CCTAGG	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	194, 222, 482
BccI	CCATC	2 cut(s)	171, 658
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	163, 284, 685
BcuI	ACTAGT	1 cut(s)	789
BfaI	CTAG	7 cut(s)	317, 353, 544, 614, 646, 760, 790
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	3 cut(s)	208, 211, 496
BlnI	CCTAGG	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	209, 212, 497
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	72, 392
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	256
Bpu10I	CCTNAGC	2 cut(s)	512, 602
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	295
BsaI	GGTCTC	2 cut(s)	284, 685
BsaJI	CCNNGG	3 cut(s)	327, 352, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 328, 544
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	2 cut(s)	502, 595
BseDI	CCNNGG	3 cut(s)	327, 352, 640
BseGI	GGATG	2 cut(s)	635, 669
BseLI	CCNNNNNNNGG	3 cut(s)	27, 328, 544
BseMI	GCAATG	2 cut(s)	502, 595
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	194, 222, 482
BsgI	GTGCAG	1 cut(s)	481
BshFI	GGCC	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	56, 295
BslI	CCNNNNNNNGG	3 cut(s)	27, 328, 544
BsmAI	GTCTC	3 cut(s)	163, 284, 685
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	2 cut(s)	284, 685
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	72, 392
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	4 cut(s)	190, 385, 398, 529
BspQI	GCTCTTC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	2 cut(s)	284, 685
BsrDI	GCAATG	2 cut(s)	502, 595
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	327, 352, 640
BssMI	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
BssT1I	CCWWGG	3 cut(s)	327, 352, 640
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	2 cut(s)	124, 197
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	3 cut(s)	193, 512, 602
BstF5I	GGATG	2 cut(s)	635, 669
BstKTI	GATC	7 cut(s)	53, 185, 285, 393, 537, 678, 711
BstMAI	GTCTC	3 cut(s)	163, 284, 685
BstMBI	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 513
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	194, 222, 482
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	635, 669
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	2 cut(s)	89, 98
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	193, 512, 602
DpnI	GATC	7 cut(s)	52, 184, 284, 392, 536, 677, 710
DpnII	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
DraIII	CACNNNGTG	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	124, 197
EarI	CTCTTC	2 cut(s)	124, 197
Eco130I	CCWWGG	3 cut(s)	327, 352, 640
Eco147I	AGGCCT	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	284, 685
EcoT14I	CCWWGG	3 cut(s)	327, 352, 640
ErhI	CCWWGG	3 cut(s)	327, 352, 640
FaeI	CATG	2 cut(s)	92, 101
FaiI	YATR	9 cut(s)	90, 99, 269, 276, 425, 568, 777, 779, 784
FalI	AAGNNNNNCTT	4 cut(s)	121, 153, 142, 174
FatI	CATG	2 cut(s)	88, 97
Fnu4HI	GCNGC	3 cut(s)	208, 211, 496
FokI	GGATG	2 cut(s)	622, 676
Fsp4HI	GCNGC	3 cut(s)	208, 211, 496
FspBI	CTAG	7 cut(s)	317, 353, 544, 614, 646, 760, 790
GluI	GCNGC	3 cut(s)	208, 211, 496
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	2 cut(s)	56, 295
Hin1II	CATG	2 cut(s)	92, 101
HinfI	GANTC	4 cut(s)	102, 134, 571, 590
HpaII	CCGG	2 cut(s)	56, 295
HphI	GGTGA	3 cut(s)	45, 135, 247
Hpy188I	TCNGA	4 cut(s)	117, 168, 252, 402
Hpy188III	TCNNGA	5 cut(s)	39, 48, 473, 538, 712
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	210, 362, 448, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 513
HpyF3I	CTNAG	3 cut(s)	193, 512, 602
Hsp92II	CATG	2 cut(s)	92, 101
Kzo9I	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	9 cut(s)	69, 308, 335, 353, 458, 496, 551, 710, 749
Lsp1109I	GCAGC	3 cut(s)	194, 222, 482
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	7 cut(s)	317, 353, 544, 614, 646, 760, 790
MaeIII	GTNAC	3 cut(s)	78, 591, 792
MalI	GATC	7 cut(s)	52, 184, 284, 392, 536, 677, 710
MboI	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
MboII	GAAGA	4 cut(s)	141, 211, 214, 751
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	4 cut(s)	93, 656, 718, 742
MlyI	GAGTC	2 cut(s)	96, 599
MnlI	CCTC	6 cut(s)	21, 84, 214, 225, 396, 521
MseI	TTAA	1 cut(s)	770
MspI	CCGG	2 cut(s)	56, 295
MspR9I	CCNGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	504, 513
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
NlaIII	CATG	2 cut(s)	92, 101
NlaIV	GGNNCC	2 cut(s)	72, 392
NmeAIII	GCCGAG	1 cut(s)	729
NmuCI	GTSAC	2 cut(s)	78, 591
PceI	AGGCCT	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	134, 571
PkrI	GCNGC	3 cut(s)	209, 212, 497
PleI	GAGTC	2 cut(s)	96, 598
PpsI	GAGTC	2 cut(s)	96, 598
PspN4I	GGNNCC	2 cut(s)	72, 392
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	770
SatI	GCNGC	3 cut(s)	208, 211, 496
Sau3AI	GATC	7 cut(s)	50, 182, 282, 390, 534, 675, 708
SchI	GAGTC	2 cut(s)	96, 599
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	7 cut(s)	8, 76, 209, 215, 518, 545, 765
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SpeI	ACTAGT	1 cut(s)	789
Sse9I	AATT	4 cut(s)	93, 656, 718, 742
SseBI	AGGCCT	1 cut(s)	321
SspMI	CTAG	7 cut(s)	317, 353, 544, 614, 646, 760, 790
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	3 cut(s)	327, 352, 640
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	47
TasI	AATT	4 cut(s)	93, 656, 718, 742
TfiI	GAWTC	2 cut(s)	134, 571
Tru1I	TTAA	1 cut(s)	770
Tru9I	TTAA	1 cut(s)	770
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	2 cut(s)	78, 591
TseI	GCWGC	3 cut(s)	207, 210, 495
Tsp45I	GTSAC	2 cut(s)	78, 591
TspDTI	ATGAA	5 cut(s)	86, 452, 563, 599, 752
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	718, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmaJI	CCTAGG	1 cut(s)	352
XspI	CTAG	7 cut(s)	317, 353, 544, 614, 646, 760, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.