Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

538005 .. 545728

Gene Structure 7724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGGAAGCAACGGTGCTGGCCGAGGCGGCTCTGGCGGAGGAGGTTGCGGGAGTACCGGCGATTGGAGCCCAGGAGATAAGAATGAAGACTCGAAACCCTCAATTTCCTCCCCCTTTCATTTTCGATCCGATCAGATTAAGCCCTCCTCCATTGCTAGAGCTCCTACTTCCACTTCCCGATTTTATCTGGGTGACGGAAGTGGTGACGGAGAATGAAGATGCAGCGGTCGAGAAAGAAGTAGAAGTGGTGACCACGAAAGAAGTAGTGAAGGAGAAATTCATCAGTGTTAAAGCAACCATAACGGTGACGCTTACAGTTGGTGGGTTTCTGTCTCACATGGGTTTAGCTCGAGGACTTGATGATATAAAAGATTTGCTTGGCCAAACGCTCTTCATGGAGCTTCTTAGCGCTCACCTTGATCCCAAGAATGAGCATCACAAGGAGATGCATCTCAAGGATATTGTCCCGGATGGCTTGCCTAATAGCCCCGTACTCCTCGCCTGTAATTCATGGATCCACTCCAAGTATGACAATCCAACCAAGAGGGTCTTCTTCACTAACAAGGTCGATTCAGATAATTATGTATGCTATGCTATTGCATTGGTGAGGCTAAGAGAAGAGGAGCTTGTGACATTGCGCGGCAATGGCCAAGAAGAGCGCAAGAGCTTTGAGAGAATACACGATTACGATGTTTACAATGATCTTGGGAATCCTGATTCGAGTCTAAAGCTTATAAGACCGGTTCTTGGAGGAAGCAAAGAATTCCCCTATCCCAGGCGATGTCGAACTGGGCGACCAATGAGTGAAGCAGATAAACATTCGGAGAAAAGGAGCAGCAAGGTGTACGTTCCTAGAGACGAAGCTTTCTCAGAGGTGAAGCAGTTAACATTTTCAGCAAAGACAGTGTACGCTGTCATGCATGCAGTAGTACCGTCCCTGGAGAACGCCATCACTGACACTAATATTGGATTCACATTGTTCTCGTCAATAGACACACTTTTCAATGAAGGCATTAAGTTGCCTCCAATTAACGAACAAGGGATTCTCCAAGCTATACTTCCTAGACTAGTAAATGCTTTGGCTTCTGGAGGTGATGTTTTGAGGTTCGTGCCCCCAGAAACAATGAATAGTAAGCGAATCAATCAATCTGAATCTTTTGTCCCGATCAATGGAGACAAATTCTTCTGGTTTAGGGACGAGGAATTTGCTAGGCAGACTCTTGCCGGTCTCAACCCATATAGCATTAAGTTGGTGACGGAATGGCCATTGAACAGTGAATTGGATCCCGACGTGTATGGTCCCCCAGAATCTGCAATTACCTCGGAAATGATTGAGCAAGAAATTAAAGGCTTTGCAACCGTCAAAGAGGCCATAAGAGAAAAGAAGTTGTTCATACTAGATTACCATGATTTGTTTTTACCATACGTGAGCAAAGTACGAGAGATTGAAGGCACAACACTATATGGATCAAGGACATTGTTCTTCCTTACCCCAGAAGGCACCCTAAGGCCGCTGGCCATTGAGTTGACTCGACCGCCAATGGACGGGAAGCCTCAGTGGAAGCAAGCCTTCCAACCCAGCTGGAATGCTACCGGTGTCTGGCTTTGGAGGATTGCCAAAGCTCATGTCCTTGCTCATGACTCTGGTTACCATCAACTTGTTAGTCACTGGCTAAGAACGCATTGTGCCACAGAACCATATATAATCGCAACCAATCGTCAACTGAGTGTGTTGCACCCAATCTACAAATTGTTGCATCCCCATTTCAGATACACTATGGAGATCAATGCTCTTGCTCGTGAATCACTTATCAATGCCGGTGGCATCATTGAAACCTCATTCTCACCTGAAAATATTCCATGGAGCTTTGCTCTATTGCCTATGCTAAGGAGTGGCGATTCGACCAAGAGGCTCTACCAGCCGACCTTATTCGCAGGTATTACTTATTTGATGTCGTTAAAGCGAACGCTTCATATTGAATTTAATGATATTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010597 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

666

Amino Acids

75.42

Weight (kDa)

5.93

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	201 - 618	1.7e-176	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
Acc36I	ACCTGC	1 cut(s)	1925
AccB1I	GGYRCC	1 cut(s)	1499
AccII	CGCG	1 cut(s)	639
AciI	CCGC	7 cut(s)	26, 35, 47, 224, 639, 1511, 1535
AclWI	GGATC	7 cut(s)	119, 413, 508, 521, 1277, 1290, 1474
AcoI	YGGCCR	5 cut(s)	18, 379, 646, 1262, 1515
AcsI	RAATTY	5 cut(s)	275, 761, 1178, 1202, 1979
AfaI	GTAC	6 cut(s)	54, 492, 845, 908, 930, 1437
AfeI	AGCGCT	1 cut(s)	409
AfiI	CCNNNNNNNGG	6 cut(s)	62, 746, 774, 1169, 1544, 1599
AflIII	ACRYGT	1 cut(s)	1290
AgeI	ACCGGT	2 cut(s)	739, 1592
AgsI	TTSAA	5 cut(s)	1003, 1270, 1448, 1832, 1979
AhlI	ACTAGT	1 cut(s)	1066
AjiI	CACGTC	1 cut(s)	1291
AjnI	CCWGG	3 cut(s)	69, 773, 936
AjuI	GAANNNNNNNTTGG	6 cut(s)	533, 565, 1041, 1073, 1262, 1294
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	4 cut(s)	336, 849, 1167, 1232
AlwI	GGATC	7 cut(s)	119, 413, 508, 521, 1277, 1290, 1474
AlwNI	CAGNNNCTG	1 cut(s)	1310
Ama87I	CYCGRG	1 cut(s)	348
Aor51HI	AGCGCT	1 cut(s)	409
AoxI	GGCC	7 cut(s)	18, 379, 646, 1262, 1368, 1508, 1515
ApeKI	GCWGC	2 cut(s)	221, 834
ApoI	RAATTY	5 cut(s)	275, 761, 1178, 1202, 1979
ArsI	GACNNNNNNTTYG	4 cut(s)	1187, 1219, 1611, 1643
AsiGI	ACCGGT	2 cut(s)	739, 1592
Asp700I	GAANNNNTTC	2 cut(s)	1388, 1854
AspLEI	GCGC	3 cut(s)	410, 639, 660
AspS9I	GGNCC	1 cut(s)	1298
AsuC2I	CCSGG	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	1298
AxyI	CCTNAGG	1 cut(s)	1505
BaeGI	GKGCMC	1 cut(s)	1113
BalI	TGGCCA	4 cut(s)	381, 648, 1264, 1517
BamHI	GGATCC	2 cut(s)	513, 1282
BanI	GGYRCC	1 cut(s)	1499
BanII	GRGCYC	2 cut(s)	70, 162
BauI	CACGAG	1 cut(s)	1797
BbsI	GAAGAC	2 cut(s)	92, 541
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	233, 846
BccI	CCATC	3 cut(s)	464, 956, 1659
BcgI	CGANNNNNNTGC	4 cut(s)	1187, 1221, 1302, 1336
BciT130I	CCWGG	3 cut(s)	71, 775, 938
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	4 cut(s)	336, 849, 1167, 1232
BcuI	ACTAGT	1 cut(s)	1066
BfaI	CTAG	6 cut(s)	155, 852, 1062, 1067, 1209, 1397
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	1925
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	5 cut(s)	27, 222, 640, 835, 1511
BlsI	GCNGC	5 cut(s)	28, 223, 641, 836, 1512
Bme1390I	CCNGG	4 cut(s)	71, 467, 775, 938
Bme18I	GGWCC	1 cut(s)	1298
BmeT110I	CYCGRG	1 cut(s)	348
BmgBI	CACGTC	1 cut(s)	1291
BmgT120I	GGNCC	1 cut(s)	1298
BmiI	GGNNCC	5 cut(s)	67, 515, 1284, 1300, 1501
BmrFI	CCNGG	4 cut(s)	71, 467, 775, 938
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	6 cut(s)	208, 435, 442, 457, 1765, 1833
BmuI	ACTGGG	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	92, 541
BplI	GAGNNNNNCTC	2 cut(s)	1855, 1887
BpmI	CTGGAG	2 cut(s)	959, 1107
Bpu10I	CCTNAGC	1 cut(s)	1886
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	1426
BsaI	GGTCTC	1 cut(s)	1232
BsaJI	CCNNGG	6 cut(s)	21, 69, 773, 936, 1320, 1859
BsaWI	WCCGGW	2 cut(s)	739, 1592
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 746, 774, 1169, 1544, 1599
Bse118I	RCCGGY	5 cut(s)	55, 739, 1223, 1592, 1817
Bse1I	ACTGG	2 cut(s)	793, 1673
Bse21I	CCTNAGG	1 cut(s)	1505
Bse3DI	GCAATG	3 cut(s)	149, 632, 649
BseBI	CCWGG	3 cut(s)	71, 775, 938
BseDI	CCNNGG	6 cut(s)	21, 69, 773, 936, 1320, 1859
BseGI	GGATG	2 cut(s)	475, 1756
BseLI	CCNNNNNNNGG	6 cut(s)	62, 746, 774, 1169, 1544, 1599
BseMI	GCAATG	3 cut(s)	149, 632, 649
BseMII	CTCAG	3 cut(s)	882, 1568, 1715
BseNI	ACTGG	2 cut(s)	793, 1673
BseRI	GAGGAG	4 cut(s)	53, 135, 485, 635
BseSI	GKGCMC	1 cut(s)	1113
BseXI	GCAGC	2 cut(s)	233, 846
BseYI	CCCAGC	1 cut(s)	1577
Bsh1236I	CGCG	1 cut(s)	639
Bsh1285I	CGRYCG	2 cut(s)	228, 1535
BshFI	GGCC	7 cut(s)	20, 381, 648, 1264, 1370, 1510, 1517
BshNI	GGYRCC	1 cut(s)	1499
BshTI	ACCGGT	2 cut(s)	739, 1592
BsiEI	CGRYCG	2 cut(s)	228, 1535
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	6 cut(s)	56, 467, 740, 1224, 1593, 1818
BslFI	GGGAC	5 cut(s)	449, 919, 1145, 1208, 1284
BslI	CCNNNNNNNGG	6 cut(s)	62, 746, 774, 1169, 1544, 1599
BsmAI	GTCTC	4 cut(s)	336, 849, 1167, 1232
BsmBI	CGTCTC	1 cut(s)	849
BsmFI	GGGAC	5 cut(s)	449, 919, 1145, 1208, 1284
BsmI	GAATGC	1 cut(s)	1591
BsnI	GGCC	7 cut(s)	20, 381, 648, 1264, 1370, 1510, 1517
Bso31I	GGTCTC	1 cut(s)	1232
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	3 cut(s)	70, 162, 1113
Bsp143I	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
Bsp19I	CCATGG	1 cut(s)	1859
BspACI	CCGC	7 cut(s)	26, 35, 47, 224, 639, 1511, 1535
BspANI	GGCC	7 cut(s)	20, 381, 648, 1264, 1370, 1510, 1517
BspCNI	CTCAG	3 cut(s)	881, 1567, 1716
BspFNI	CGCG	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	1636
BspLI	GGNNCC	5 cut(s)	67, 515, 1284, 1300, 1501
BspMI	ACCTGC	1 cut(s)	1925
BspPI	GGATC	7 cut(s)	119, 413, 508, 521, 1277, 1290, 1474
BspQI	GCTCTTC	2 cut(s)	395, 648
BspT107I	GGYRCC	1 cut(s)	1499
BspTNI	GGTCTC	1 cut(s)	1232
BsrDI	GCAATG	3 cut(s)	149, 632, 649
BsrFI	RCCGGY	5 cut(s)	55, 739, 1223, 1592, 1817
BsrI	ACTGG	2 cut(s)	793, 1673
BssAI	RCCGGY	5 cut(s)	55, 739, 1223, 1592, 1817
BssECI	CCNNGG	6 cut(s)	21, 69, 773, 936, 1320, 1859
BssMI	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
BssSI	CACGAG	1 cut(s)	1797
BssT1I	CCWWGG	1 cut(s)	1859
Bst2BI	CACGAG	1 cut(s)	1797
Bst2UI	CCWGG	3 cut(s)	71, 775, 938
Bst4CI	ACNGT	7 cut(s)	13, 304, 316, 904, 933, 1274, 1360
Bst6I	CTCTTC	3 cut(s)	395, 612, 648
BstBAI	YACGTR	1 cut(s)	1426
BstC8I	GCNNGC	5 cut(s)	18, 476, 921, 1515, 1566
BstDEI	CTNAG	8 cut(s)	404, 611, 868, 1505, 1554, 1673, 1724, 1886
BstDSI	CCRYGG	1 cut(s)	1859
BstEII	GGTNACC	2 cut(s)	247, 1646
BstENI	CCTNNNNNAGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	475, 1756
BstFNI	CGCG	1 cut(s)	639
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	3 cut(s)	410, 639, 660
BstKTI	GATC	9 cut(s)	127, 132, 421, 516, 703, 1167, 1285, 1469, 1785
BstMAI	GTCTC	4 cut(s)	336, 849, 1167, 1232
BstMBI	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
BstMCI	CGRYCG	2 cut(s)	228, 1535
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 32, 65, 645, 1678, 1918
BstNI	CCWGG	3 cut(s)	71, 775, 938
BstNSI	RCATGY	1 cut(s)	923
BstPI	GGTNACC	2 cut(s)	247, 1646
BstSCI	CCNGG	4 cut(s)	69, 465, 773, 936
BstSLI	GKGCMC	1 cut(s)	1113
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	2 cut(s)	233, 846
BstV2I	GAAGAC	2 cut(s)	92, 541
BstX2I	RGATCY	2 cut(s)	513, 1282
BstYI	RGATCY	2 cut(s)	513, 1282
Bsu36I	CCTNAGG	1 cut(s)	1505
BsuRI	GGCC	7 cut(s)	20, 381, 648, 1264, 1370, 1510, 1517
BtgI	CCRYGG	1 cut(s)	1859
BtgZI	GCGATG	1 cut(s)	793
BtrI	CACGTC	1 cut(s)	1291
BtsCI	GGATG	2 cut(s)	475, 1756
BtsIMutI	CAGTG	6 cut(s)	289, 909, 951, 1279, 1562, 1666
BveI	ACCTGC	1 cut(s)	1925
Cac8I	GCNNGC	5 cut(s)	18, 476, 921, 1515, 1566
CaiI	CAGNNNCTG	1 cut(s)	1310
CciI	TCATGA	1 cut(s)	1636
CfoI	GCGC	3 cut(s)	410, 639, 660
Cfr10I	RCCGGY	5 cut(s)	55, 739, 1223, 1592, 1817
Cfr13I	GGNCC	1 cut(s)	1298
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	6 cut(s)	53, 491, 844, 907, 929, 1436
CspAI	ACCGGT	2 cut(s)	739, 1592
CspCI	CAANNNNNGTGG	2 cut(s)	1801, 1836
CviAII	CATG	9 cut(s)	337, 394, 510, 916, 920, 1406, 1625, 1637, 1860
CviQI	GTAC	6 cut(s)	53, 491, 844, 907, 929, 1436
DdeI	CTNAG	8 cut(s)	404, 611, 868, 1505, 1554, 1673, 1724, 1886
DpnI	GATC	9 cut(s)	126, 131, 420, 515, 702, 1166, 1284, 1468, 1784
DpnII	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
EaeI	YGGCCR	5 cut(s)	18, 379, 646, 1262, 1515
Eam1104I	CTCTTC	3 cut(s)	395, 612, 648
EarI	CTCTTC	3 cut(s)	395, 612, 648
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	1859
Eco24I	GRGCYC	2 cut(s)	70, 162
Eco31I	GGTCTC	1 cut(s)	1232
Eco47I	GGWCC	1 cut(s)	1298
Eco47III	AGCGCT	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	160
Eco81I	CCTNAGG	1 cut(s)	1505
Eco88I	CYCGRG	1 cut(s)	348
Eco91I	GGTNACC	2 cut(s)	247, 1646
EcoICRI	GAGCTC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	772
EcoO65I	GGTNACC	2 cut(s)	247, 1646
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	3 cut(s)	69, 773, 936
EcoT14I	CCWWGG	1 cut(s)	1859
EcoT22I	ATGCAT	2 cut(s)	450, 921
EcoT38I	GRGCYC	2 cut(s)	70, 162
ErhI	CCWWGG	1 cut(s)	1859
Esp3I	CGTCTC	1 cut(s)	849
FaeI	CATG	9 cut(s)	340, 397, 513, 919, 923, 1409, 1628, 1640, 1863
FaqI	GGGAC	5 cut(s)	449, 919, 1145, 1208, 1284
FatI	CATG	9 cut(s)	336, 393, 509, 915, 919, 1405, 1624, 1636, 1859
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	5 cut(s)	27, 222, 640, 835, 1511
FokI	GGATG	2 cut(s)	482, 1743
FriOI	GRGCYC	2 cut(s)	70, 162
Fsp4HI	GCNGC	5 cut(s)	27, 222, 640, 835, 1511
FspBI	CTAG	6 cut(s)	155, 852, 1062, 1067, 1209, 1397
GlaI	GCGC	3 cut(s)	409, 638, 659
GluI	GCNGC	5 cut(s)	27, 222, 640, 835, 1511
GsaI	CCCAGC	1 cut(s)	1581
GsuI	CTGGAG	2 cut(s)	959, 1107
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	7 cut(s)	20, 381, 648, 1264, 1370, 1510, 1517
HapII	CCGG	6 cut(s)	56, 467, 740, 1224, 1593, 1818
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	3 cut(s)	410, 639, 660
Hin1II	CATG	9 cut(s)	340, 397, 513, 919, 923, 1409, 1628, 1640, 1863
Hin6I	GCGC	3 cut(s)	408, 637, 658
HinP1I	GCGC	3 cut(s)	408, 637, 658
HincII	GTYRAC	3 cut(s)	885, 1527, 1721
HindII	GTYRAC	3 cut(s)	885, 1527, 1721
HindIII	AAGCTT	2 cut(s)	728, 861
HpaI	GTTAAC	1 cut(s)	885
HpaII	CCGG	6 cut(s)	56, 467, 740, 1224, 1593, 1818
Hpy166II	GTNNAC	6 cut(s)	694, 844, 885, 907, 1527, 1721
Hpy188I	TCNGA	8 cut(s)	129, 134, 574, 823, 871, 1150, 1324, 1769
Hpy188III	TCNNGA	8 cut(s)	176, 229, 713, 1086, 1162, 1286, 1637, 1799
Hpy8I	GTNNAC	6 cut(s)	694, 844, 885, 907, 1527, 1721
Hpy99I	CGWCG	1 cut(s)	1292
HpyAV	CCTTC	5 cut(s)	262, 1001, 1442, 1490, 1579
HpyCH4III	ACNGT	7 cut(s)	13, 304, 316, 904, 933, 1274, 1360
HpyCH4IV	ACGT	3 cut(s)	846, 1290, 1425
HpyCH4V	TGCA	9 cut(s)	221, 448, 599, 919, 923, 1313, 1355, 1735, 1756
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 32, 65, 645, 1678, 1918
HpyF3I	CTNAG	8 cut(s)	404, 611, 868, 1505, 1554, 1673, 1724, 1886
HpySE526I	ACGT	3 cut(s)	846, 1290, 1425
Hsp92II	CATG	9 cut(s)	340, 397, 513, 919, 923, 1409, 1628, 1640, 1863
HspAI	GCGC	3 cut(s)	408, 637, 658
KspAI	GTTAAC	1 cut(s)	885
Kzo9I	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
LguI	GCTCTTC	2 cut(s)	395, 648
LmnI	GCTCC	6 cut(s)	65, 165, 397, 622, 831, 1863
Lsp1109I	GCAGC	2 cut(s)	233, 846
LweI	GCATC	6 cut(s)	208, 435, 442, 457, 1765, 1833
MaeI	CTAG	6 cut(s)	155, 852, 1062, 1067, 1209, 1397
MaeII	ACGT	3 cut(s)	846, 1290, 1425
MaeIII	GTNAC	8 cut(s)	190, 202, 247, 304, 628, 1252, 1646, 1664
MalI	GATC	9 cut(s)	126, 131, 420, 515, 702, 1166, 1284, 1468, 1784
MboI	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
MboII	GAAGA	9 cut(s)	97, 227, 382, 541, 544, 629, 665, 1174, 1474
MflI	RGATCY	2 cut(s)	513, 1282
MhlI	GDGCHC	3 cut(s)	70, 162, 1113
MlsI	TGGCCA	4 cut(s)	381, 648, 1264, 1517
MluNI	TGGCCA	4 cut(s)	381, 648, 1264, 1517
MlyI	GAGTC	5 cut(s)	82, 730, 1210, 1522, 1634
MmeI	TCCRAC	2 cut(s)	560, 1597
Mox20I	TGGCCA	4 cut(s)	381, 648, 1264, 1517
Mph1103I	ATGCAT	2 cut(s)	450, 921
MroXI	GAANNNNTTC	2 cut(s)	1388, 1854
MscI	TGGCCA	4 cut(s)	381, 648, 1264, 1517
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	4 cut(s)	381, 648, 1264, 1517
MspA1I	CMGCKG	3 cut(s)	224, 1513, 1581
MspI	CCGG	6 cut(s)	56, 467, 740, 1224, 1593, 1818
MspR9I	CCNGG	4 cut(s)	71, 467, 775, 938
Mva1269I	GAATGC	1 cut(s)	1591
MvaI	CCWGG	3 cut(s)	71, 775, 938
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	6 cut(s)	26, 32, 65, 645, 1678, 1918
NciI	CCSGG	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	1859
NdeII	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
NlaIII	CATG	9 cut(s)	340, 397, 513, 919, 923, 1409, 1628, 1640, 1863
NlaIV	GGNNCC	5 cut(s)	67, 515, 1284, 1300, 1501
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	7 cut(s)	190, 202, 247, 304, 628, 1252, 1664
NsiI	ATGCAT	2 cut(s)	450, 921
NspI	RCATGY	1 cut(s)	923
PaeI	GCATGC	1 cut(s)	923
PaeR7I	CTCGAG	1 cut(s)	348
PagI	TCATGA	1 cut(s)	1636
PciSI	GCTCTTC	2 cut(s)	395, 648
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PctI	GAATGC	1 cut(s)	1591
PdmI	GAANNNNTTC	2 cut(s)	1388, 1854
PfoI	TCCNGGA	1 cut(s)	465
PinAI	ACCGGT	2 cut(s)	739, 1592
PkrI	GCNGC	5 cut(s)	28, 223, 641, 836, 1512
PleI	GAGTC	5 cut(s)	82, 729, 1210, 1522, 1634
PpsI	GAGTC	5 cut(s)	82, 729, 1210, 1522, 1634
Ppu21I	YACGTR	1 cut(s)	1426
PsiI	TTATAA	1 cut(s)	734
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	69, 773, 936
PspEI	GGTNACC	2 cut(s)	247, 1646
PspFI	CCCAGC	1 cut(s)	1577
PspGI	CCWGG	3 cut(s)	69, 773, 936
PspN4I	GGNNCC	5 cut(s)	67, 515, 1284, 1300, 1501
PspPI	GGNCC	1 cut(s)	1298
PspXI	VCTCGAGB	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	1310
PsuI	RGATCY	2 cut(s)	513, 1282
PvuII	CAGCTG	1 cut(s)	1581
RsaI	GTAC	6 cut(s)	54, 492, 845, 908, 930, 1437
RsaNI	GTAC	6 cut(s)	53, 491, 844, 907, 929, 1436
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	395, 648
SatI	GCNGC	5 cut(s)	27, 222, 640, 835, 1511
Sau3AI	GATC	9 cut(s)	124, 129, 418, 513, 700, 1164, 1282, 1466, 1782
Sau96I	GGNCC	1 cut(s)	1298
SchI	GAGTC	5 cut(s)	82, 730, 1210, 1522, 1634
ScrFI	CCNGG	4 cut(s)	71, 467, 775, 938
SduI	GDGCHC	3 cut(s)	70, 162, 1113
SfaNI	GCATC	6 cut(s)	208, 435, 442, 457, 1765, 1833
Sfr274I	CTCGAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	1298
SlaI	CTCGAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	348, 452
SmoI	CTYRAG	2 cut(s)	348, 452
SpeI	ACTAGT	1 cut(s)	1066
SphI	GCATGC	1 cut(s)	923
SsiI	CCGC	7 cut(s)	26, 35, 47, 224, 639, 1511, 1535
SspI	AATATT	2 cut(s)	964, 1855
SspMI	CTAG	6 cut(s)	155, 852, 1062, 1067, 1209, 1397
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	69, 465, 773, 936
StyI	CCWWGG	1 cut(s)	1859
TaaI	ACNGT	7 cut(s)	13, 304, 316, 904, 933, 1274, 1360
TaiI	ACGT	3 cut(s)	849, 1293, 1428
TaqI	TCGA	9 cut(s)	91, 123, 228, 349, 567, 719, 784, 1531, 1901
TauI	GCSGC	3 cut(s)	29, 642, 1513
TscAI	CASTG	6 cut(s)	289, 909, 958, 1279, 1562, 1673
TseFI	GTSAC	7 cut(s)	190, 202, 247, 304, 628, 1252, 1664
TseI	GCWGC	2 cut(s)	221, 834
Tsp45I	GTSAC	7 cut(s)	190, 202, 247, 304, 628, 1252, 1664
TspGWI	ACGGA	3 cut(s)	209, 221, 1271
TspRI	CASTG	6 cut(s)	289, 909, 958, 1279, 1562, 1673
VpaK11BI	GGWCC	1 cut(s)	1298
XagI	CCTNNNNNAGG	1 cut(s)	772
XapI	RAATTY	5 cut(s)	275, 761, 1178, 1202, 1979
XceI	RCATGY	1 cut(s)	923
XhoI	CTCGAG	1 cut(s)	348
XmnI	GAANNNNTTC	2 cut(s)	1388, 1854
XspI	CTAG	6 cut(s)	155, 852, 1062, 1067, 1209, 1397
Zsp2I	ATGCAT	2 cut(s)	450, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.