Rh1DG004600

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
731049 .. 740404
9356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG004600.1

Sequence Viewer

Length: 1881 bp
ATGAATTCTCGGCTGCAGCAGGGACCCCACTCTGATGATCTAATCAATCACCATGGAAACCCCTCCCTCGCCAACATCCTTCCCCGCCACGATGTCCATCCTGATCAGGTTTCCAATGATGTACTCAAACCTGCAGAGTCTCAAGCAGTACTAACCATAAAAGCTGTGGTTACAGTCATAGTAACAGCCGGAGGCTTCCTATCCACTATAGGGATCATTCGTCACCTTGAGGACTTGGCAGGCAAAACCTTGCTGCTGGAGCTAGTTAGCGCCCAGCTTGATCCCAAGACTGGAAAAGAGAAGGAAGCGATCAAGGGGCACTCGCACAGAGTGAGGGGAGACGTTGAGGAGGTGATATATGAGAGTGAGTTCAGCATCCCAGCAGGTTTTGGAGAGATTGGAGCTGTTCTGGTTGAGAATGAGCACCACAAGGAGATTTACATCCAGACCATCGACCTCACCGGCTTCCCAAATGCCTCCACTCTGTCCATTCCCTGTAAATCATGGGTTCATTCCAAACATTATAATGCACAGAAGAGAGTTTTCTTCACCAACAAGTCTTACTTGCCATCAGACACTCCAAGTGGGTTGAAGTGGATAAGAGAAATGGAGCTGCAAAATTTGAGAGGAAATGGAGACGGCGAAAGAAAAACATCGGACAGGATTTACGATTATGATAAATATAATGATCTCGGAGTTCCAGATAGCAAACTGGCTAGGCCAGTCCTGGGGGGAAAAGAGCTTCCCTACCCTAGGCGCTGCAGAACAGGACGTCCACGCACTGAAAAGGACCCATTATCTGAAGAAAGAAGCACCAGTGTGTATATACCAAGAGATGAAGCGTTTTCAGAGGAGAAACATCTGACATTCTCAGGAAAGACACTAAAATCTGTGCTGCACGCTTTGCTCCCTCAGCTTGAGATATCACTTATTGATCGGGACTTGGGATTTCCACTCTTCAAAGAAATAGATTCATTGTTTAATGAAGGCATTGCATTGCCTAAGCCAAAAACAATTGGTTTTTTTAGGTCAATCATTCCAAGGCTAGTGAAGGCTGTCAGTGATGGGCAGAACGATCTTTTGCTCTTTGAGACCCCTGCAATGCTTGACCGTGATAAATTTTCTTGGTTCAGAGATGAAGAATTTTCTCGGCAAACTCTAGCTGGTCTTAATCCATTTAGTATTGAGCTAGTTAAGGAATGGCCACTGAAAAGTAAACTTGACCCTGAGATTTACGGCCCCCCTGAATCATTGATTACTACTGAACTGGTGGAGAAAGAGATCAAGGGTTTCATGACTGTCAACGAGGCCTTGGACAAAAAGAAGCTGTTTCTTTTGGATTATCATGACCTGCTCATTCCTTTAGTGAACAAAGTGAGAGAAATTGAAGGGACCACATTGTATGGTTCTCGGACACTATTCTTTCTCACTGAGAATGGCTCGCTGAGGCCTGTTGCTATTGAACTTACTCGGCCACCAATTGGTGACAAGCCACAATGGAAGCAAGTCTTCGTCCCATGCTGGGATGCCACCGGTGCCTGGCTATGGAGGCTTGCTAAAGCTCATGTTTGTGCTCATGACTCTGGCTATCATCAGCTTGTGATCCACTGGCTGCGGACTCATTGTGTGACAGAGCCATACATAATTGCAGCTAATCGGCAAATGAGTGCTATGCATCCCATTTATAGGCTTCTTTGTCCTCATTTTCGGTATACAATGGAAATCAATGCCCTGGCTCGAGAAAGCCTCATTAACGCAGACGGAGTCATTGAGAGTAGCTTTTCACCAGGAAAGTACTCCATGGAGCTCAGTTCTGCTGCGTATGACCAGCTCTGGCGCTTTGACATGGAAGCTTTGCCAGCCGATCTGATAAGAAGGTAG

Protein Analysis

626

Amino Acids

70.99

Weight (kDa)

6.28

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 101 - 183 1.4e-07 PLAT/LH2 domain
Lipoxygenase PF00305 196 - 626 4.1e-196 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AatII GACGTC 1 cut(s) 775
Acc36I ACCTGC 3 cut(s) 139, 374, 1359
AccB1I GGYRCC 1 cut(s) 1535
AccB7I CCANNNNNTGG 1 cut(s) 1481
AccI GTMKAC 1 cut(s) 1712
AciI CCGC 2 cut(s) 85, 1615
AclWI GGATC 3 cut(s) 221, 275, 1597
AcoI YGGCCR 2 cut(s) 1202, 1472
AcsI RAATTY 4 cut(s) 4, 619, 1118, 1142
AcuI CTGAAG 1 cut(s) 822
AcyI GRCGYC 1 cut(s) 772
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 3 cut(s) 123, 150, 1796
AfiI CCNNNNNNNGG 9 cut(s) 210, 290, 728, 753, 1481, 1522, 1539, 1545, 1686
AgeI ACCGGT 1 cut(s) 1532
AgsI TTSAA 4 cut(s) 592, 961, 1388, 1463
AjnI CCWGG 4 cut(s) 726, 1538, 1731, 1786
AleI CACNNNNGTG 1 cut(s) 818
AloI GAACNNNNNNTCC 2 cut(s) 757, 789
Alw21I GWGCWC 3 cut(s) 426, 1576, 1809
Alw26I GTCTC 4 cut(s) 144, 333, 630, 1085
AlwI GGATC 3 cut(s) 221, 275, 1597
Ama87I CYCGRG 1 cut(s) 1737
AoxI GGCC 6 cut(s) 719, 1202, 1237, 1308, 1448, 1472
ApeKI GCWGC 9 cut(s) 13, 16, 253, 613, 759, 895, 1612, 1649, 1817
ApoI RAATTY 4 cut(s) 4, 619, 1118, 1142
AsiGI ACCGGT 1 cut(s) 1532
AspA2I CCTAGG 1 cut(s) 752
AspLEI GCGC 3 cut(s) 272, 759, 1839
AspS9I GGNCC 4 cut(s) 23, 790, 1238, 1392
AsuHPI GGTGA 7 cut(s) 41, 215, 364, 451, 541, 1496, 1776
AvaI CYCGRG 1 cut(s) 1737
AvaII GGWCC 3 cut(s) 23, 790, 1392
AvrII CCTAGG 1 cut(s) 752
BaeGI GKGCMC 1 cut(s) 321
BalI TGGCCA 1 cut(s) 1204
BanI GGYRCC 1 cut(s) 1535
BanII GRGCYC 1 cut(s) 1809
BbsI GAAGAC 1 cut(s) 1501
Bbv12I GWGCWC 3 cut(s) 426, 1576, 1809
BbvCI CCTCAGC 2 cut(s) 912, 1445
BbvI GCAGC 8 cut(s) 28, 240, 600, 746, 882, 1599, 1661, 1804
BccI CCATC 4 cut(s) 105, 458, 577, 1058
BceAI ACGGC 2 cut(s) 655, 1252
BciT130I CCWGG 4 cut(s) 728, 1540, 1733, 1788
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 4 cut(s) 144, 333, 630, 1085
BfaI CTAG 6 cut(s) 263, 717, 753, 1046, 1160, 1190
BfmI CTRYAG 4 cut(s) 14, 132, 207, 760
BfoI RGCGCY 3 cut(s) 273, 760, 1840
BfuAI ACCTGC 3 cut(s) 139, 374, 1359
BisI GCNGC 9 cut(s) 14, 17, 254, 614, 760, 896, 1613, 1650, 1818
BlnI CCTAGG 1 cut(s) 752
BlsI GCNGC 9 cut(s) 15, 18, 255, 615, 761, 897, 1614, 1651, 1819
BmcAI AGTACT 2 cut(s) 150, 1796
Bme1390I CCNGG 4 cut(s) 728, 1540, 1733, 1788
Bme18I GGWCC 3 cut(s) 23, 790, 1392
BmeT110I CYCGRG 1 cut(s) 1737
BmgT120I GGNCC 4 cut(s) 23, 790, 1238, 1392
BmiI GGNNCC 6 cut(s) 24, 25, 792, 1240, 1393, 1537
BmrFI CCNGG 4 cut(s) 728, 1540, 1733, 1788
BmsI GCATC 3 cut(s) 384, 1516, 1684
BpiI GAAGAC 1 cut(s) 1501
BplI GAGNNNNNCTC 4 cut(s) 1424, 1456, 1731, 1763
BpmI CTGGAG 1 cut(s) 278
Bpu10I CCTNAGC 3 cut(s) 912, 1002, 1445
BpuEI CTTGAG 3 cut(s) 126, 248, 938
BsaBI GATNNNNATC 2 cut(s) 96, 440
BsaHI GRCGYC 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 7 cut(s) 52, 727, 752, 1040, 1311, 1731, 1800
BsaWI WCCGGW 1 cut(s) 1532
Bsc4I CCNNNNNNNGG 9 cut(s) 210, 290, 728, 753, 1481, 1522, 1539, 1545, 1686
Bse118I RCCGGY 2 cut(s) 461, 1532
Bse1I ACTGG 6 cut(s) 295, 717, 722, 816, 1272, 1613
Bse3DI GCAATG 3 cut(s) 990, 995, 1107
Bse8I GATNNNNATC 2 cut(s) 96, 440
BseBI CCWGG 4 cut(s) 728, 1540, 1733, 1788
BseDI CCNNGG 7 cut(s) 52, 727, 752, 1040, 1311, 1731, 1800
BseGI GGATG 6 cut(s) 75, 97, 375, 441, 1531, 1675
BseJI GATNNNNATC 2 cut(s) 96, 440
BseLI CCNNNNNNNGG 9 cut(s) 210, 290, 728, 753, 1481, 1522, 1539, 1545, 1686
BseMI GCAATG 3 cut(s) 990, 995, 1107
BseMII CTCAG 6 cut(s) 885, 926, 1218, 1422, 1436, 1822
BseNI ACTGG 6 cut(s) 295, 717, 722, 816, 1272, 1613
BseRI GAGGAG 2 cut(s) 362, 866
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 8 cut(s) 28, 240, 600, 746, 882, 1599, 1661, 1804
BseYI CCCAGC 3 cut(s) 273, 379, 1521
BsgI GTGCAG 1 cut(s) 881
BshFI GGCC 6 cut(s) 721, 1204, 1239, 1310, 1450, 1474
BshNI GGYRCC 1 cut(s) 1535
BshTI ACCGGT 1 cut(s) 1532
BsiHKAI GWGCWC 3 cut(s) 426, 1576, 1809
BsiHKCI CYCGRG 1 cut(s) 1737
BsiSI CCGG 3 cut(s) 189, 462, 1533
BslFI GGGAC 4 cut(s) 36, 953, 1405, 1499
BslI CCNNNNNNNGG 9 cut(s) 210, 290, 728, 753, 1481, 1522, 1539, 1545, 1686
BsmAI GTCTC 4 cut(s) 144, 333, 630, 1085
BsmBI CGTCTC 2 cut(s) 333, 630
BsmFI GGGAC 4 cut(s) 36, 953, 1405, 1499
BsnI GGCC 6 cut(s) 721, 1204, 1239, 1310, 1450, 1474
Bso31I GGTCTC 1 cut(s) 1085
BsoBI CYCGRG 1 cut(s) 1737
Bsp1286I GDGCHC 4 cut(s) 321, 426, 1576, 1809
Bsp19I CCATGG 2 cut(s) 52, 1800
BspACI CCGC 2 cut(s) 85, 1615
BspANI GGCC 6 cut(s) 721, 1204, 1239, 1310, 1450, 1474
BspCNI CTCAG 6 cut(s) 884, 925, 1219, 1423, 1437, 1821
BspHI TCATGA 3 cut(s) 1293, 1345, 1576
BspLI GGNNCC 6 cut(s) 24, 25, 792, 1240, 1393, 1537
BspMAI CTGCAG 3 cut(s) 18, 136, 764
BspMI ACCTGC 3 cut(s) 139, 374, 1359
BspPI GGATC 3 cut(s) 221, 275, 1597
BspT107I GGYRCC 1 cut(s) 1535
BspTNI GGTCTC 1 cut(s) 1085
BsrDI GCAATG 3 cut(s) 990, 995, 1107
BsrFI RCCGGY 2 cut(s) 461, 1532
BsrI ACTGG 6 cut(s) 295, 717, 722, 816, 1272, 1613
BssAI RCCGGY 2 cut(s) 461, 1532
BssECI CCNNGG 7 cut(s) 52, 727, 752, 1040, 1311, 1731, 1800
BssNAI GTATAC 1 cut(s) 1713
BssNI GRCGYC 1 cut(s) 772
BssT1I CCWWGG 5 cut(s) 52, 752, 1040, 1311, 1800
Bst1107I GTATAC 1 cut(s) 1713
Bst2UI CCWGG 4 cut(s) 728, 1540, 1733, 1788
Bst4CI ACNGT 3 cut(s) 175, 1112, 1300
Bst6I CTCTTC 2 cut(s) 530, 962
BstACI GRCGYC 1 cut(s) 772
BstAPI GCANNNNNTGC 1 cut(s) 904
BstC8I GCNNGC 5 cut(s) 241, 900, 1442, 1554, 1860
BstDEI CTNAG 7 cut(s) 871, 912, 1002, 1227, 1431, 1445, 1808
BstDSI CCRYGG 2 cut(s) 52, 1800
BstENI CCTNNNNNAGG 1 cut(s) 751
BstF5I GGATG 6 cut(s) 75, 97, 375, 441, 1531, 1675
BstH2I RGCGCY 3 cut(s) 273, 760, 1840
BstHHI GCGC 3 cut(s) 272, 759, 1839
BstMAI GTCTC 4 cut(s) 144, 333, 630, 1085
BstMWI GCNNNNNNNGC 6 cut(s) 259, 904, 913, 1535, 1549, 1859
BstNI CCWGG 4 cut(s) 728, 1540, 1733, 1788
BstSCI CCNGG 4 cut(s) 726, 1538, 1731, 1786
BstSFI CTRYAG 4 cut(s) 14, 132, 207, 760
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 8 cut(s) 28, 240, 600, 746, 882, 1599, 1661, 1804
BstV2I GAAGAC 1 cut(s) 1501
BstZ17I GTATAC 1 cut(s) 1713
BsuRI GGCC 6 cut(s) 721, 1204, 1239, 1310, 1450, 1474
BtgI CCRYGG 2 cut(s) 52, 1800
BtsCI GGATG 6 cut(s) 75, 97, 375, 441, 1531, 1675
BtsIMutI CAGTG 6 cut(s) 780, 823, 1066, 1205, 1428, 1606
BveI ACCTGC 3 cut(s) 139, 374, 1359
Cac8I GCNNGC 5 cut(s) 241, 900, 1442, 1554, 1860
CciI TCATGA 3 cut(s) 1293, 1345, 1576
CfoI GCGC 3 cut(s) 272, 759, 1839
Cfr10I RCCGGY 2 cut(s) 461, 1532
Cfr13I GGNCC 4 cut(s) 23, 790, 1238, 1392
Csp6I GTAC 3 cut(s) 122, 149, 1795
CspAI ACCGGT 1 cut(s) 1532
CviAII CATG 9 cut(s) 53, 504, 1294, 1346, 1518, 1565, 1577, 1801, 1846
CviQI GTAC 3 cut(s) 122, 149, 1795
DdeI CTNAG 7 cut(s) 871, 912, 1002, 1227, 1431, 1445, 1808
DraIII CACNNNGTG 1 cut(s) 331
EaeI YGGCCR 2 cut(s) 1202, 1472
Eam1104I CTCTTC 2 cut(s) 530, 962
EarI CTCTTC 2 cut(s) 530, 962
Ecl136II GAGCTC 1 cut(s) 1807
Eco130I CCWWGG 5 cut(s) 52, 752, 1040, 1311, 1800
Eco147I AGGCCT 2 cut(s) 1310, 1450
Eco24I GRGCYC 1 cut(s) 1809
Eco31I GGTCTC 1 cut(s) 1085
Eco32I GATATC 1 cut(s) 924
Eco47I GGWCC 3 cut(s) 23, 790, 1392
Eco53kI GAGCTC 1 cut(s) 1807
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 1737
EcoICRI GAGCTC 1 cut(s) 1807
EcoNI CCTNNNNNAGG 1 cut(s) 751
EcoO109I RGGNCCY 2 cut(s) 23, 790
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 726, 1538, 1731, 1786
EcoRV GATATC 1 cut(s) 924
EcoT14I CCWWGG 5 cut(s) 52, 752, 1040, 1311, 1800
EcoT22I ATGCAT 1 cut(s) 1677
EcoT38I GRGCYC 1 cut(s) 1809
ErhI CCWWGG 5 cut(s) 52, 752, 1040, 1311, 1800
Esp3I CGTCTC 2 cut(s) 333, 630
FaeI CATG 9 cut(s) 56, 507, 1297, 1349, 1521, 1568, 1580, 1804, 1849
FalI AAGNNNNNCTT 4 cut(s) 548, 580, 1493, 1525
FaqI GGGAC 4 cut(s) 36, 953, 1405, 1499
FatI CATG 9 cut(s) 52, 503, 1293, 1345, 1517, 1564, 1576, 1800, 1845
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 1 cut(s) 1712
Fnu4HI GCNGC 9 cut(s) 14, 17, 254, 614, 760, 896, 1613, 1650, 1818
FokI GGATG 6 cut(s) 62, 84, 362, 428, 1538, 1662
FriOI GRGCYC 1 cut(s) 1809
Fsp4HI GCNGC 9 cut(s) 14, 17, 254, 614, 760, 896, 1613, 1650, 1818
FspBI CTAG 6 cut(s) 263, 717, 753, 1046, 1160, 1190
GlaI GCGC 3 cut(s) 271, 758, 1838
GluI GCNGC 9 cut(s) 14, 17, 254, 614, 760, 896, 1613, 1650, 1818
GsaI CCCAGC 3 cut(s) 277, 383, 1525
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 3 cut(s) 273, 760, 1840
HaeIII GGCC 6 cut(s) 721, 1204, 1239, 1310, 1450, 1474
HapII CCGG 3 cut(s) 189, 462, 1533
HhaI GCGC 3 cut(s) 272, 759, 1839
Hin1I GRCGYC 1 cut(s) 772
Hin1II CATG 9 cut(s) 56, 507, 1297, 1349, 1521, 1568, 1580, 1804, 1849
Hin6I GCGC 3 cut(s) 270, 757, 1837
HinP1I GCGC 3 cut(s) 270, 757, 1837
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HindIII AAGCTT 1 cut(s) 1851
HinfI GANTC 6 cut(s) 137, 971, 1247, 1580, 1618, 1764
HpaII CCGG 3 cut(s) 189, 462, 1533
HphI GGTGA 7 cut(s) 41, 215, 364, 451, 541, 1496, 1776
Hpy166II GTNNAC 5 cut(s) 776, 1217, 1303, 1369, 1713
Hpy188III TCNNGA 9 cut(s) 101, 445, 701, 873, 938, 1294, 1346, 1577, 1739
Hpy8I GTNNAC 5 cut(s) 776, 1217, 1303, 1369, 1713
HpyAV CCTTC 6 cut(s) 89, 295, 980, 1045, 1382, 1869
HpyCH4III ACNGT 3 cut(s) 175, 1112, 1300
HpyCH4IV ACGT 2 cut(s) 342, 772
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 904, 913, 1535, 1549, 1859
HpyF3I CTNAG 7 cut(s) 871, 912, 1002, 1227, 1431, 1445, 1808
HpySE526I ACGT 2 cut(s) 342, 772
Hsp92I GRCGYC 1 cut(s) 772
Hsp92II CATG 9 cut(s) 56, 507, 1297, 1349, 1521, 1568, 1580, 1804, 1849
HspAI GCGC 3 cut(s) 270, 757, 1837
KflI GGGWCCC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 103
LmnI GCTCC 5 cut(s) 259, 401, 610, 912, 1804
Lsp1109I GCAGC 8 cut(s) 28, 240, 600, 746, 882, 1599, 1661, 1804
LweI GCATC 3 cut(s) 384, 1516, 1684
MaeI CTAG 6 cut(s) 263, 717, 753, 1046, 1160, 1190
MaeII ACGT 2 cut(s) 342, 772
MaeIII GTNAC 5 cut(s) 169, 181, 221, 1484, 1627
MboII GAAGA 6 cut(s) 538, 547, 815, 949, 1151, 1501
MfeI CAATTG 2 cut(s) 1014, 1479
MhlI GDGCHC 4 cut(s) 321, 426, 1576, 1809
MlsI TGGCCA 1 cut(s) 1204
MluCI AATT 8 cut(s) 4, 619, 1014, 1118, 1142, 1383, 1479, 1644
MluNI TGGCCA 1 cut(s) 1204
MlyI GAGTC 4 cut(s) 146, 1574, 1612, 1773
Mox20I TGGCCA 1 cut(s) 1204
Mph1103I ATGCAT 1 cut(s) 1677
MscI TGGCCA 1 cut(s) 1204
MseI TTAA 4 cut(s) 981, 1170, 1194, 1752
MslI CAYNNNNRTG 4 cut(s) 33, 525, 818, 1569
Msp20I TGGCCA 1 cut(s) 1204
MspI CCGG 3 cut(s) 189, 462, 1533
MspR9I CCNGG 4 cut(s) 728, 1540, 1733, 1788
MunI CAATTG 2 cut(s) 1014, 1479
MvaI CCWGG 4 cut(s) 728, 1540, 1733, 1788
MwoI GCNNNNNNNGC 6 cut(s) 259, 904, 913, 1535, 1549, 1859
NcoI CCATGG 2 cut(s) 52, 1800
NlaIII CATG 9 cut(s) 56, 507, 1297, 1349, 1521, 1568, 1580, 1804, 1849
NlaIV GGNNCC 6 cut(s) 24, 25, 792, 1240, 1393, 1537
NmeAIII GCCGAG 2 cut(s) 1129, 1450
NmuCI GTSAC 3 cut(s) 221, 1484, 1627
NsiI ATGCAT 1 cut(s) 1677
OliI CACNNNNGTG 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 1737
PagI TCATGA 3 cut(s) 1293, 1345, 1576
PceI AGGCCT 2 cut(s) 1310, 1450
PfeI GAWTC 2 cut(s) 971, 1247
PflFI GACNNNGTC 1 cut(s) 1763
PflMI CCANNNNNTGG 1 cut(s) 1481
PinAI ACCGGT 1 cut(s) 1532
PkrI GCNGC 9 cut(s) 15, 18, 255, 615, 761, 897, 1614, 1651, 1819
PleI GAGTC 4 cut(s) 145, 1574, 1612, 1772
PpsI GAGTC 4 cut(s) 145, 1574, 1612, 1772
PpuMI RGGWCCY 2 cut(s) 23, 790
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 1809
Psp5II RGGWCCY 2 cut(s) 23, 790
Psp6I CCWGG 4 cut(s) 726, 1538, 1731, 1786
PspFI CCCAGC 3 cut(s) 273, 379, 1521
PspGI CCWGG 4 cut(s) 726, 1538, 1731, 1786
PspN4I GGNNCC 6 cut(s) 24, 25, 792, 1240, 1393, 1537
PspPI GGNCC 4 cut(s) 23, 790, 1238, 1392
PspPPI RGGWCCY 2 cut(s) 23, 790
PstI CTGCAG 3 cut(s) 18, 136, 764
PsyI GACNNNGTC 1 cut(s) 1763
RsaI GTAC 3 cut(s) 123, 150, 1796
RsaNI GTAC 3 cut(s) 122, 149, 1795
RseI CAYNNNNRTG 4 cut(s) 33, 525, 818, 1569
SacI GAGCTC 1 cut(s) 1809
SaqAI TTAA 4 cut(s) 981, 1170, 1194, 1752
SatI GCNGC 9 cut(s) 14, 17, 254, 614, 760, 896, 1613, 1650, 1818
Sau96I GGNCC 4 cut(s) 23, 790, 1238, 1392
ScaI AGTACT 2 cut(s) 150, 1796
SchI GAGTC 4 cut(s) 146, 1574, 1612, 1773
ScrFI CCNGG 4 cut(s) 728, 1540, 1733, 1788
SduI GDGCHC 4 cut(s) 321, 426, 1576, 1809
SfaNI GCATC 3 cut(s) 384, 1516, 1684
SfcI CTRYAG 4 cut(s) 14, 132, 207, 760
Sfr274I CTCGAG 1 cut(s) 1737
SgrAI CRCCGGYG 1 cut(s) 1532
SinI GGWCC 3 cut(s) 23, 790, 1392
SlaI CTCGAG 1 cut(s) 1737
SmiMI CAYNNNNRTG 4 cut(s) 33, 525, 818, 1569
SmlI CTYRAG 4 cut(s) 141, 227, 917, 1737
SmoI CTYRAG 4 cut(s) 141, 227, 917, 1737
Sse9I AATT 8 cut(s) 4, 619, 1014, 1118, 1142, 1383, 1479, 1644
SseBI AGGCCT 2 cut(s) 1310, 1450
SsiI CCGC 2 cut(s) 85, 1615
SspMI CTAG 6 cut(s) 263, 717, 753, 1046, 1160, 1190
SstI GAGCTC 1 cut(s) 1809
StuI AGGCCT 2 cut(s) 1310, 1450
StyD4I CCNGG 4 cut(s) 726, 1538, 1731, 1786
StyI CCWWGG 5 cut(s) 52, 752, 1040, 1311, 1800
TaaI ACNGT 3 cut(s) 175, 1112, 1300
TaiI ACGT 2 cut(s) 345, 775
TaqI TCGA 2 cut(s) 453, 1738
TasI AATT 8 cut(s) 4, 619, 1014, 1118, 1142, 1383, 1479, 1644
TatI WGTACW 3 cut(s) 121, 148, 1794
TfiI GAWTC 2 cut(s) 971, 1247
Tru1I TTAA 4 cut(s) 981, 1170, 1194, 1752
Tru9I TTAA 4 cut(s) 981, 1170, 1194, 1752
TscAI CASTG 6 cut(s) 787, 823, 1066, 1212, 1435, 1613
TseFI GTSAC 3 cut(s) 221, 1484, 1627
TseI GCWGC 9 cut(s) 13, 16, 253, 613, 759, 895, 1612, 1649, 1817
Tsp45I GTSAC 3 cut(s) 221, 1484, 1627
TspDTI ATGAA 7 cut(s) 17, 500, 852, 963, 999, 1152, 1282
TspGWI ACGGA 1 cut(s) 1776
TspRI CASTG 6 cut(s) 787, 823, 1066, 1212, 1435, 1613
Tth111I GACNNNGTC 1 cut(s) 1763
Van91I CCANNNNNTGG 1 cut(s) 1481
VpaK11BI GGWCC 3 cut(s) 23, 790, 1392
XagI CCTNNNNNAGG 1 cut(s) 751
XapI RAATTY 4 cut(s) 4, 619, 1118, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 1737
XmaJI CCTAGG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 1712
XspI CTAG 6 cut(s) 263, 717, 753, 1046, 1160, 1190
ZraI GACGTC 1 cut(s) 773
ZrmI AGTACT 2 cut(s) 150, 1796
Zsp2I ATGCAT 1 cut(s) 1677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.