RchiOBHm_Chr5g0078091

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
83993484 .. 83998908
5425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35263

Sequence Viewer

Length: 2946 bp
ATGTTGAAACCCAGACTACTTCACCCATCAGAGTCTCTGTTTCTCCACCCCAAGCCGTTCCTCCATGGAAGCAGTGGCCGCAGCAGTACTGCTTCACTTCCTGTCTGGTCAACAAAGCCCTCATTCCCCAATAAACACAAAAGCCTTCGATTCGGTTCAACTAATTACAGATACGAAACAAAAGCCGTAAGCAGTGATAGTACTATTACTAGTAGCAGCAGCGATAGTACCAGTGCTATTAGCAACAGTGATGGTACTAGTAGCAGCGTCAGCAGTACTAGTACTAGCAGCAGCAGCACTAGTAATACTAGCAATCCTGGACCGACGACGACAACAACGATAACCACTACCACTGAGGTGACGGAAGTAGTGACGGAAACTGAAGATGCAGTGGTCGACAAAGAAGTAGAAGTAGTGACCACAAAAGAAGTGGTGACGGAGAAGTTCACGAGTGTTAAAGCAACCATAACGGTGACGCTTACTGTTGGAGGGTTTCTGAACAACTTAGGCCTAACCCGAGGAATCGATGATGTCAGAGATATGCTTGGTCAAACTCTCTTCATGGATCTTATTAGTGCTCACGTTGATCCCAAAACTGGATCAGAGAAGGAGCATGTTACCGGTTTCGCACACAGGAGTAGCCAGAAGGACAGTGAGATTGTATACGAGACAGATTTTAAAGTTCCATTAGATTTTGGAGAAGTGGGTGCCGTTTTAATAGAGAATGAGCACCACAAGGAGATGTATCTCAAGGATATTGTGCTGGATGGCTTGCCTAATGGTCCTGTACTACTTACCTGTAATTCATGGCTCCATTCCAAGTATGACAATCCAGCGAAGAGAGTCTTCTTCACAAACAAGTCATATTTGCCATCTCAAACACCAAGTGCTTTGGTGAGGTTAAGAGAAGAGGAGCTTGTTACTTTGCGTGGCAATGGCCAAGGAGAACGCAAGATCTTTGAGAGAGTATACGACTATGATGTTTACAATGATCTTGGGGATCCTGATTCAAAATTAAGGTTAAAAAGAACTGTTATTGGGGGCAGCACAGAGTTCCCCTATCCCAGGCGATGCCGAACCGGGCGACCAATGTGCGAAACAGATAGGCTTTCGGAGAAAAGAAGTAGAAGTACGTATGTTCCCAGAGATGAAGCATTCTCAGAGATTAAACAATTAACTTTTTCAGCAAAGACAGTATATTCTGTCTTGCACGCAGTGGTACCTGCCTTGGAGACTGCCATGGTCGACTCTGATCTCGGATTCCCACTGTTCACATCTATAGACTCACTCTACAATGAAGGCATTAGCTTGCCTCCCCTTAAAGATCAAGGGGTTCTCAGAACCATGGTTCCCAGGCTAGTCAATGCTATAGCTTCCGGTGAAGATGTTCTGCGGTTTGTGCCCCCAGAAACAATGAATAGAGACAAATTCTTTTGGTTTAGGGATGAGGAATTTGCTAGGCAGACTCTTGCGGGTCTTAACCCATATAGCATCAAGTTGGTGACGGAATGGCCATTGAGGAGTGAATTGGACCCTGACGTATATGGTCCTCCAGAATCAGCAATCACCACGAAAATGATTGAGCAAGAGATCAGAGGCTTTGCGACCATCCAAGAGGCCATAAGAGAAAAGAAGTTGTTTATACTAGATTACCATGATTTGTTCTTACCGTACGTGGGCAAAGTAAGAGAGATCGAAGGTACAACTCTGTATGGATCTAGGACACTTTTTTTCCTCACCCCAGACGGCACATTGAGGCCGCTGGTTATTGAGTTGACTCGACCGCCACTGGACGGAAAGCCTCAGTGGAAGCAAACCTTCCAACCCAGCTGGAATGCTACCGGTGTCTGGCTTTGGAGGATCGCCAAAGCTCATGTTCTTGCTCACGACTCCGGTTACCATCAACTTGTTACTCACTGGCTAAGAACACATTGTGCCACAGAGCCATATATAATCGCAACAAATCGGCAACTGAGTGTGATGCACCCAATCTATCGATTGTTGCATCCCCATTTCAGATACACGATGGAGATTAATGCTCTTGCTCGCGAAGCACTAGTCAACGCCGGTGGCATCATTGAAACGTCATTCTCGCCGGGAAAATATTCCATGGAGATTTGCTCTATTGCCTATGGTAAGGAGTGGCGATTCGACCTAGAAGCACTGCCCGCTGACCTTATTCGCAGGGGCATGGCCGTTGAGGACCCAACTGCTCCACATGGTCTGAGGTTATCAATTCAAGACTACCCTTTTGCTAATGACGGACTCCTCCTATGGGATGCCCTCAAACAATGGGTCACTGATTATGTAAGCCACTACTACACAGACTCCACCATAGTACAAACTGACCAAGAGCTCCAAGCCTGGTGGACAGAGATCAGAACAGTAGGGCACGGAGACAAAAAGGATGAACCCTGGTGGCCTGAGCTAAATACCCCTCAAGATCTCATCGACATTATCACAACAATGGTTTGGGTCACATCCGGTCACCACGCAGCAGTCAACTTTGGTCAATATACCTATGCAGGTTACTTCCCTAACCGCCCAACAATTGCAAGGACCAACGTTCCCACGGAGGACCCCGACGACGAGGTCTGGAAGAAGTTCTTGGAAAAACCCGAAAGCGCACTTTTGCAGTGCTTTCCTTCGCAAATTCAAGCCACAACGATCATGGCGGTTTTGGACATTTTGTCTAATCATTCGCCTGATGAAGAGTACATGGTAGAGAAGATGGAGGACGCATGGGCTGAAGACGAAGTCATAAGGGCGGCGTACGAGCGGTTTAAAGGGAGGTTGATGATGCTTGAAGGAACTATTGATGATAGAAATGCTAATTATGAGTTGAAGAATCGAAGTGGTGCTGGGGTTGTGCCTTACGAGCTTCTAAAGCCCTTCTCAGAACCTGGGGTTACAGGAAAGGGAGTCCCATATAGCATCTCTATTTGA

Protein Analysis

981

Amino Acids

110.59

Weight (kDa)

5.48

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 206 - 284 3.5e-09 PLAT/LH2 domain
Lipoxygenase PF00305 298 - 964 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2591
Acc36I ACCTGC 2 cut(s) 1231, 2516
Acc65I GGTACC 1 cut(s) 1219
AccB1I GGYRCC 2 cut(s) 707, 1219
AccBSI CCGCTC 1 cut(s) 2779
AccI GTMKAC 4 cut(s) 396, 663, 969, 1245
AccII CGCG 1 cut(s) 2049
AclI AACGTT 1 cut(s) 2565
AclWI GGATC 7 cut(s) 573, 581, 607, 995, 1008, 1723, 1868
AcoI YGGCCR 4 cut(s) 76, 937, 1511, 2193
AcsI RAATTY 3 cut(s) 1427, 1451, 2652
AcuI CTGAAG 2 cut(s) 402, 2769
AdeI CACNNNGTG 3 cut(s) 887, 1216, 1934
AfiI CCNNNNNNNGG 6 cut(s) 596, 1065, 1676, 1793, 1848, 2275
AgeI ACCGGT 2 cut(s) 620, 1841
AgsI TTSAA 8 cut(s) 7, 159, 1011, 2081, 2240, 2657, 2807, 2845
AhdI GACNNNNNGTC 1 cut(s) 2689
AhlI ACTAGT 5 cut(s) 209, 257, 278, 299, 2056
AjnI CCWGG 6 cut(s) 316, 1064, 1352, 2363, 2414, 2902
AjuI GAANNNNNNNTTGG 2 cut(s) 2591, 2623
AleI CACNNNNGTG 1 cut(s) 356
AloI GAACNNNNNNTCC 2 cut(s) 1333, 1365
AluBI AGCT 8 cut(s) 916, 1308, 1373, 1830, 1871, 2356, 2428, 2881
AluI AGCT 8 cut(s) 916, 1308, 1373, 1830, 1871, 2356, 2428, 2881
Alw21I GWGCWC 3 cut(s) 580, 732, 2358
Alw26I GTCTC 5 cut(s) 39, 662, 1226, 1416, 2391
AlwI GGATC 7 cut(s) 573, 581, 607, 995, 1008, 1723, 1868
AlwNI CAGNNNCTG 1 cut(s) 2903
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 8 cut(s) 76, 508, 937, 1511, 1617, 1757, 2193, 2420
ApeKI GCWGC 9 cut(s) 81, 216, 219, 264, 288, 291, 294, 1044, 2495
ApoI RAATTY 3 cut(s) 1427, 1451, 2652
ArsI GACNNNNNNTTYG 6 cut(s) 2043, 2075, 2234, 2266, 2280, 2312
AseI ATTAAT 1 cut(s) 2034
AsiGI ACCGGT 2 cut(s) 620, 1841
Asp700I GAANNNNTTC 3 cut(s) 1386, 2104, 2603
Asp718I GGTACC 1 cut(s) 1219
AspLEI GCGC 1 cut(s) 2627
AspS9I GGNCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
AsuC2I CCSGG 2 cut(s) 1081, 2097
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
BaeGI GKGCMC 2 cut(s) 1404, 2394
BalI TGGCCA 2 cut(s) 939, 1513
BamHI GGATCC 1 cut(s) 1000
BanI GGYRCC 2 cut(s) 707, 1219
BanII GRGCYC 1 cut(s) 2358
BarI GAAGNNNNNNTAC 2 cut(s) 1114, 1146
BauI CACGAG 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 838, 2757
Bbv12I GWGCWC 3 cut(s) 580, 732, 2358
BbvI GCAGC 9 cut(s) 93, 228, 231, 276, 300, 303, 306, 1056, 2507
BccI CCATC 8 cut(s) 34, 245, 761, 880, 1616, 1908, 2020, 2725
BceAI ACGGC 5 cut(s) 40, 170, 695, 1762, 2180
BcgI CGANNNNNNTGC 2 cut(s) 1074, 1108
BciT130I CCWGG 6 cut(s) 318, 1066, 1354, 2365, 2416, 2904
BcnI CCSGG 2 cut(s) 1081, 2097
BcoDI GTCTC 5 cut(s) 39, 662, 1226, 1416, 2391
BcuI ACTAGT 5 cut(s) 209, 257, 278, 299, 2056
BfmI CTRYAG 2 cut(s) 1278, 1368
BfuAI ACCTGC 2 cut(s) 1231, 2516
BglII AGATCT 2 cut(s) 954, 2443
BmcAI AGTACT 4 cut(s) 88, 202, 277, 283
Bme1390I CCNGG 8 cut(s) 318, 1066, 1081, 1354, 2097, 2365, 2416, 2904
Bme18I GGWCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
BmeRI GACNNNNNGTC 1 cut(s) 2689
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
BmiI GGNNCC 8 cut(s) 709, 812, 1002, 1221, 1350, 1533, 2205, 2580
BmrFI CCNGG 8 cut(s) 318, 1066, 1081, 1354, 2097, 2365, 2416, 2904
BmsI GCATC 8 cut(s) 376, 1061, 1500, 1971, 2014, 2082, 2269, 2790
BpiI GAAGAC 2 cut(s) 838, 2757
BplI GAGNNNNNCTC 2 cut(s) 2105, 2137
BpmI CTGGAG 1 cut(s) 1536
Bpu10I CCTNAGC 1 cut(s) 2424
BpuEI CTTGAG 2 cut(s) 734, 2424
BpuMI CCSGG 2 cut(s) 1081, 2097
Bsa29I ATCGAT 2 cut(s) 525, 1996
BsaAI YACGTR 2 cut(s) 1134, 1675
BsaWI WCCGGW 5 cut(s) 620, 1376, 1841, 1892, 2483
BsaXI ACNNNNNCTCC 2 cut(s) 2312, 2342
Bsc4I CCNNNNNNNGG 6 cut(s) 596, 1065, 1676, 1793, 1848, 2275
Bse118I RCCGGY 3 cut(s) 620, 1841, 2066
Bse1I ACTGG 4 cut(s) 231, 601, 1794, 1922
Bse3DI GCAATG 1 cut(s) 940
BseBI CCWGG 6 cut(s) 318, 1066, 1354, 2365, 2416, 2904
BseCI ATCGAT 2 cut(s) 525, 1996
BseGI GGATG 7 cut(s) 772, 1450, 1608, 2005, 2284, 2413, 2480
BseLI CCNNNNNNNGG 6 cut(s) 596, 1065, 1676, 1793, 1848, 2275
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 8 cut(s) 345, 1173, 1351, 1817, 1964, 2216, 2415, 2910
BseNI ACTGG 4 cut(s) 231, 601, 1794, 1922
BseRI GAGGAG 3 cut(s) 926, 1534, 2258
BseSI GKGCMC 2 cut(s) 1404, 2394
BseXI GCAGC 9 cut(s) 93, 228, 231, 276, 300, 303, 306, 1056, 2507
BseYI CCCAGC 2 cut(s) 1826, 2861
Bsh1236I CGCG 1 cut(s) 2049
Bsh1285I CGRYCG 1 cut(s) 1784
BshFI GGCC 8 cut(s) 78, 510, 939, 1513, 1619, 1759, 2195, 2422
BshNI GGYRCC 2 cut(s) 707, 1219
BshTI ACCGGT 2 cut(s) 620, 1841
BshVI ATCGAT 2 cut(s) 525, 1996
BsiEI CGRYCG 1 cut(s) 1784
BsiHKAI GWGCWC 3 cut(s) 580, 732, 2358
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 8 cut(s) 621, 1080, 1377, 1842, 1893, 2067, 2096, 2484
BsiWI CGTACG 2 cut(s) 1671, 2772
BslFI GGGAC 1 cut(s) 2909
BslI CCNNNNNNNGG 6 cut(s) 596, 1065, 1676, 1793, 1848, 2275
BsmAI GTCTC 5 cut(s) 39, 662, 1226, 1416, 2391
BsmFI GGGAC 1 cut(s) 2909
BsmI GAATGC 2 cut(s) 1154, 1840
BsnI GGCC 8 cut(s) 78, 510, 939, 1513, 1619, 1759, 2195, 2422
BsoBI CYCGRG 1 cut(s) 516
Bsp1286I GDGCHC 5 cut(s) 580, 732, 1404, 2358, 2394
Bsp19I CCATGG 4 cut(s) 64, 1239, 1344, 2109
Bsp68I TCGCGA 1 cut(s) 2049
BspANI GGCC 8 cut(s) 78, 510, 939, 1513, 1619, 1759, 2195, 2422
BspCNI CTCAG 8 cut(s) 346, 1172, 1350, 1816, 1965, 2217, 2416, 2909
BspDI ATCGAT 2 cut(s) 525, 1996
BspFNI CGCG 1 cut(s) 2049
BspLI GGNNCC 8 cut(s) 709, 812, 1002, 1221, 1350, 1533, 2205, 2580
BspMI ACCTGC 2 cut(s) 1231, 2516
BspPI GGATC 7 cut(s) 573, 581, 607, 995, 1008, 1723, 1868
BspT107I GGYRCC 2 cut(s) 707, 1219
BsrBI CCGCTC 1 cut(s) 2779
BsrDI GCAATG 1 cut(s) 940
BsrFI RCCGGY 3 cut(s) 620, 1841, 2066
BsrI ACTGG 4 cut(s) 231, 601, 1794, 1922
BssAI RCCGGY 3 cut(s) 620, 1841, 2066
BssNAI GTATAC 2 cut(s) 664, 970
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 6 cut(s) 64, 940, 1227, 1239, 1344, 2109
Bst1107I GTATAC 2 cut(s) 664, 970
Bst2BI CACGAG 1 cut(s) 448
Bst2UI CCWGG 6 cut(s) 318, 1066, 1354, 2365, 2416, 2904
Bst4CI ACNGT 9 cut(s) 248, 472, 484, 653, 1033, 1195, 1269, 1671, 2386
Bst6I CTCTTC 4 cut(s) 563, 833, 903, 2706
BstBAI YACGTR 2 cut(s) 1134, 1675
BstC8I GCNNGC 5 cut(s) 773, 1212, 1310, 2047, 2169
BstDSI CCRYGG 5 cut(s) 64, 1239, 1344, 2109, 2571
BstEII GGTNACC 2 cut(s) 1895, 2486
BstENI CCTNNNNNAGG 1 cut(s) 1063
BstF5I GGATG 7 cut(s) 772, 1450, 1608, 2005, 2284, 2413, 2480
BstFNI CGCG 1 cut(s) 2049
BstHHI GCGC 1 cut(s) 2627
BstMAI GTCTC 5 cut(s) 39, 662, 1226, 1416, 2391
BstMCI CGRYCG 1 cut(s) 1784
BstMWI GCNNNNNNNGC 8 cut(s) 78, 270, 294, 1399, 2051, 2168, 2878, 2887
BstNI CCWGG 6 cut(s) 318, 1066, 1354, 2365, 2416, 2904
BstNSI RCATGY 1 cut(s) 617
BstPI GGTNACC 2 cut(s) 1895, 2486
BstSCI CCNGG 8 cut(s) 316, 1064, 1079, 1352, 2095, 2363, 2414, 2902
BstSFI CTRYAG 2 cut(s) 1278, 1368
BstSLI GKGCMC 2 cut(s) 1404, 2394
BstSNI TACGTA 1 cut(s) 1134
BstUI CGCG 1 cut(s) 2049
BstV1I GCAGC 9 cut(s) 93, 228, 231, 276, 300, 303, 306, 1056, 2507
BstV2I GAAGAC 2 cut(s) 838, 2757
BstX2I RGATCY 5 cut(s) 565, 954, 1000, 1715, 2443
BstYI RGATCY 5 cut(s) 565, 954, 1000, 1715, 2443
BstZ17I GTATAC 2 cut(s) 664, 970
Bsu15I ATCGAT 2 cut(s) 525, 1996
BsuRI GGCC 8 cut(s) 78, 510, 939, 1513, 1619, 1759, 2195, 2422
BsuTUI ATCGAT 2 cut(s) 525, 1996
BtgI CCRYGG 5 cut(s) 64, 1239, 1344, 2109, 2571
BtgZI GCGATG 1 cut(s) 1084
BtsCI GGATG 7 cut(s) 772, 1450, 1608, 2005, 2284, 2413, 2480
BtsI GCAGTG 6 cut(s) 79, 199, 396, 1221, 2162, 2642
BtuMI TCGCGA 1 cut(s) 2049
BveI ACCTGC 2 cut(s) 1231, 2516
Cac8I GCNNGC 5 cut(s) 773, 1212, 1310, 2047, 2169
CaiI CAGNNNCTG 1 cut(s) 2903
CfoI GCGC 1 cut(s) 2627
Cfr10I RCCGGY 3 cut(s) 620, 1841, 2066
Cfr13I GGNCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
ClaI ATCGAT 2 cut(s) 525, 1996
CseI GACGC 3 cut(s) 256, 484, 2747
CspAI ACCGGT 2 cut(s) 620, 1841
CspCI CAANNNNNGTGG 6 cut(s) 411, 446, 2050, 2085, 2348, 2383
DraI TTTAAA 2 cut(s) 679, 2785
DraIII CACNNNGTG 3 cut(s) 887, 1216, 1934
DrdI GACNNNNNNGTC 1 cut(s) 2591
DriI GACNNNNNGTC 1 cut(s) 2689
DseDI GACNNNNNNGTC 1 cut(s) 2591
EaeI YGGCCR 4 cut(s) 76, 937, 1511, 2193
Eam1104I CTCTTC 4 cut(s) 563, 833, 903, 2706
Eam1105I GACNNNNNGTC 1 cut(s) 2689
EarI CTCTTC 4 cut(s) 563, 833, 903, 2706
Ecl136II GAGCTC 1 cut(s) 2356
Eco105I TACGTA 1 cut(s) 1134
Eco130I CCWWGG 6 cut(s) 64, 940, 1227, 1239, 1344, 2109
Eco147I AGGCCT 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 2358
Eco47I GGWCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
Eco53kI GAGCTC 1 cut(s) 2356
Eco57I CTGAAG 2 cut(s) 402, 2769
Eco88I CYCGRG 1 cut(s) 516
Eco91I GGTNACC 2 cut(s) 1895, 2486
EcoICRI GAGCTC 1 cut(s) 2356
EcoNI CCTNNNNNAGG 1 cut(s) 1063
EcoO109I RGGNCCY 2 cut(s) 2203, 2578
EcoO65I GGTNACC 2 cut(s) 1895, 2486
EcoRII CCWGG 6 cut(s) 316, 1064, 1352, 2363, 2414, 2902
EcoT14I CCWWGG 6 cut(s) 64, 940, 1227, 1239, 1344, 2109
EcoT38I GRGCYC 1 cut(s) 2358
ErhI CCWWGG 6 cut(s) 64, 940, 1227, 1239, 1344, 2109
FalI AAGNNNNNCTT 8 cut(s) 830, 862, 900, 932, 1802, 1834, 2591, 2623
FaqI GGGAC 1 cut(s) 2909
FauI CCCGC 2 cut(s) 1465, 2176
FblI GTMKAC 4 cut(s) 396, 663, 969, 1245
FokI GGATG 7 cut(s) 779, 1457, 1595, 1992, 2291, 2420, 2467
FriOI GRGCYC 1 cut(s) 2358
GlaI GCGC 1 cut(s) 2626
GsaI CCCAGC 2 cut(s) 1830, 2865
GsuI CTGGAG 1 cut(s) 1536
HaeIII GGCC 8 cut(s) 78, 510, 939, 1513, 1619, 1759, 2195, 2422
HapII CCGG 8 cut(s) 621, 1080, 1377, 1842, 1893, 2067, 2096, 2484
HgaI GACGC 3 cut(s) 256, 484, 2747
HhaI GCGC 1 cut(s) 2627
Hin6I GCGC 1 cut(s) 2625
HinP1I GCGC 1 cut(s) 2625
HincII GTYRAC 6 cut(s) 111, 397, 1246, 1776, 2062, 2503
HindII GTYRAC 6 cut(s) 111, 397, 1246, 1776, 2062, 2503
HpaII CCGG 8 cut(s) 621, 1080, 1377, 1842, 1893, 2067, 2096, 2484
Hpy188III TCNNGA 8 cut(s) 448, 1004, 1553, 1886, 2048, 2240, 2441, 2596
Hpy99I CGWCG 4 cut(s) 328, 331, 2588, 2591
HpyAV CCTTC 9 cut(s) 155, 601, 640, 1292, 1691, 1828, 2655, 2801, 2902
HpyCH4III ACNGT 9 cut(s) 248, 472, 484, 653, 1033, 1195, 1269, 1671, 2386
HpyCH4IV ACGT 6 cut(s) 582, 1133, 1539, 1674, 2084, 2565
HpyCH4V TGCA 7 cut(s) 389, 1210, 1984, 2005, 2525, 2555, 2635
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 270, 294, 1399, 2051, 2168, 2878, 2887
HpySE526I ACGT 6 cut(s) 582, 1133, 1539, 1674, 2084, 2565
HspAI GCGC 1 cut(s) 2625
KpnI GGTACC 1 cut(s) 1223
LmnI GCTCC 5 cut(s) 610, 816, 913, 2218, 2361
Lsp1109I GCAGC 9 cut(s) 93, 228, 231, 276, 300, 303, 306, 1056, 2507
LweI GCATC 8 cut(s) 376, 1061, 1500, 1971, 2014, 2082, 2269, 2790
MaeII ACGT 6 cut(s) 582, 1133, 1539, 1674, 2084, 2565
MbiI CCGCTC 1 cut(s) 2779
MfeI CAATTG 1 cut(s) 2550
MflI RGATCY 5 cut(s) 565, 954, 1000, 1715, 2443
MhlI GDGCHC 5 cut(s) 580, 732, 1404, 2358, 2394
MlsI TGGCCA 2 cut(s) 939, 1513
MluNI TGGCCA 2 cut(s) 939, 1513
MmeI TCCRAC 2 cut(s) 466, 1846
Mox20I TGGCCA 2 cut(s) 939, 1513
MroXI GAANNNNTTC 3 cut(s) 1386, 2104, 2603
MscI TGGCCA 2 cut(s) 939, 1513
MslI CAYNNNNRTG 4 cut(s) 356, 470, 1574, 2465
Msp20I TGGCCA 2 cut(s) 939, 1513
MspA1I CMGCKG 3 cut(s) 1762, 1830, 2171
MspI CCGG 8 cut(s) 621, 1080, 1377, 1842, 1893, 2067, 2096, 2484
MspR9I CCNGG 8 cut(s) 318, 1066, 1081, 1354, 2097, 2365, 2416, 2904
MunI CAATTG 1 cut(s) 2550
Mva1269I GAATGC 2 cut(s) 1154, 1840
MvaI CCWGG 6 cut(s) 318, 1066, 1354, 2365, 2416, 2904
MvnI CGCG 1 cut(s) 2049
MwoI GCNNNNNNNGC 8 cut(s) 78, 270, 294, 1399, 2051, 2168, 2878, 2887
NciI CCSGG 2 cut(s) 1081, 2097
NcoI CCATGG 4 cut(s) 64, 1239, 1344, 2109
NlaIV GGNNCC 8 cut(s) 709, 812, 1002, 1221, 1350, 1533, 2205, 2580
NmuCI GTSAC 9 cut(s) 358, 370, 415, 433, 472, 1501, 2296, 2476, 2486
NruI TCGCGA 1 cut(s) 2049
NspI RCATGY 1 cut(s) 617
OliI CACNNNNGTG 1 cut(s) 356
PceI AGGCCT 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PctI GAATGC 2 cut(s) 1154, 1840
PdmI GAANNNNTTC 3 cut(s) 1386, 2104, 2603
PfeI GAWTC 7 cut(s) 150, 522, 1007, 1260, 1556, 2148, 2848
Pfl23II CGTACG 2 cut(s) 1671, 2772
PflFI GACNNNGTC 2 cut(s) 2591, 2756
PfoI TCCNGGA 1 cut(s) 316
PinAI ACCGGT 2 cut(s) 620, 1841
Ppu21I YACGTR 2 cut(s) 1134, 1675
PpuMI RGGWCCY 2 cut(s) 2203, 2578
PshBI ATTAAT 1 cut(s) 2034
Psp124BI GAGCTC 1 cut(s) 2358
Psp1406I AACGTT 1 cut(s) 2565
Psp5II RGGWCCY 2 cut(s) 2203, 2578
Psp6I CCWGG 6 cut(s) 316, 1064, 1352, 2363, 2414, 2902
PspEI GGTNACC 2 cut(s) 1895, 2486
PspFI CCCAGC 2 cut(s) 1826, 2861
PspGI CCWGG 6 cut(s) 316, 1064, 1352, 2363, 2414, 2902
PspLI CGTACG 2 cut(s) 1671, 2772
PspN4I GGNNCC 8 cut(s) 709, 812, 1002, 1221, 1350, 1533, 2205, 2580
PspPI GGNCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
PspPPI RGGWCCY 2 cut(s) 2203, 2578
PstNI CAGNNNCTG 1 cut(s) 2903
PsuI RGATCY 5 cut(s) 565, 954, 1000, 1715, 2443
PsyI GACNNNGTC 2 cut(s) 2591, 2756
PvuII CAGCTG 1 cut(s) 1830
RruI TCGCGA 1 cut(s) 2049
RseI CAYNNNNRTG 4 cut(s) 356, 470, 1574, 2465
SacI GAGCTC 1 cut(s) 2358
SalI GTCGAC 2 cut(s) 395, 1244
Sau96I GGNCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
ScaI AGTACT 4 cut(s) 88, 202, 277, 283
ScrFI CCNGG 8 cut(s) 318, 1066, 1081, 1354, 2097, 2365, 2416, 2904
SduI GDGCHC 5 cut(s) 580, 732, 1404, 2358, 2394
SfaNI GCATC 8 cut(s) 376, 1061, 1500, 1971, 2014, 2082, 2269, 2790
SfcI CTRYAG 2 cut(s) 1278, 1368
SgrAI CRCCGGYG 1 cut(s) 2066
SinI GGWCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
SmiMI CAYNNNNRTG 4 cut(s) 356, 470, 1574, 2465
SmlI CTYRAG 2 cut(s) 749, 2439
SmoI CTYRAG 2 cut(s) 749, 2439
SnaBI TACGTA 1 cut(s) 1134
SpeI ACTAGT 5 cut(s) 209, 257, 278, 299, 2056
SseBI AGGCCT 1 cut(s) 510
SspI AATATT 1 cut(s) 2105
SstI GAGCTC 1 cut(s) 2358
StuI AGGCCT 1 cut(s) 510
StyD4I CCNGG 8 cut(s) 316, 1064, 1079, 1352, 2095, 2363, 2414, 2902
StyI CCWWGG 6 cut(s) 64, 940, 1227, 1239, 1344, 2109
TaaI ACNGT 9 cut(s) 248, 472, 484, 653, 1033, 1195, 1269, 1671, 2386
TaiI ACGT 6 cut(s) 585, 1136, 1542, 1677, 2087, 2568
TaqII GACCGA 1 cut(s) 337
TatI WGTACW 7 cut(s) 86, 200, 275, 281, 787, 2338, 2715
TauI GCSGC 3 cut(s) 81, 1762, 2771
TfiI GAWTC 7 cut(s) 150, 522, 1007, 1260, 1556, 2148, 2848
TseFI GTSAC 9 cut(s) 358, 370, 415, 433, 472, 1501, 2296, 2476, 2486
TseI GCWGC 9 cut(s) 81, 216, 219, 264, 288, 291, 294, 1044, 2495
Tsp45I GTSAC 9 cut(s) 358, 370, 415, 433, 472, 1501, 2296, 2476, 2486
TspDTI ATGAA 7 cut(s) 550, 795, 1164, 1311, 1430, 2424, 2724
TspGWI ACGGA 8 cut(s) 377, 389, 452, 1520, 1809, 2277, 2409, 2588
Tth111I GACNNNGTC 2 cut(s) 2591, 2756
VpaK11BI GGWCC 7 cut(s) 320, 782, 1531, 1547, 2203, 2559, 2578
VspI ATTAAT 1 cut(s) 2034
XagI CCTNNNNNAGG 1 cut(s) 1063
XapI RAATTY 3 cut(s) 1427, 1451, 2652
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 3 cut(s) 71, 427, 2668
XmiI GTMKAC 4 cut(s) 396, 663, 969, 1245
XmnI GAANNNNTTC 3 cut(s) 1386, 2104, 2603
ZrmI AGTACT 4 cut(s) 88, 202, 277, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.