Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

730164 .. 730919

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCAGTTGAGGATCCTACAGCCAAGCATGGTCTGAAGCTAACAATTGAAGACTATCCTTTTGCAAACGATGGTCTTATTCTTTGGGATGCCATTAACCAGTGGGTGAGCGACTATGTAAATCACTACTACCCAGACGCTAGTCTTGTTAAATGTGATCAGGAGCTTCAGGGTTGGTGGACAGAAGTTAGAACTAAAGGCCATGAAGACAAAAAAGATGAGCCATGGTGGCCTGTTTTGAAAACCCCAGAAGATCTCATTCTTGTTTTGACAACAATAATTTGGGTGACATCCGGTCATCATGCAGCAGTGAACTTTGGTCAGTACACATACGCTGGATACTTTCCAAACCGACCTACAATAGCTCGAACCAACATGCCATGTGAAGATCCATCCGAGGAGGTTGTCAATACTTTTATGACGAAACCCGAAACAATACTGCTAAACTGCTTTCCCTCAAAGATTCAAGCAACAACAGTGATGGCTGTGTTAGATGTGTTATCGACACATTCACCCGATGAGGAGTATATTGGTGAGATTTTGGAGCCATCTTGGACTGAAAATCCTGTTATAATGGATGCATTCGAGTGTTTCAAAGACAGTTTAAAAGAGCTAGAAAGAATTATTAATCAGAGGAACGCCGATAAGAACCTGAAAAACAGAGTTGGAGCAGGGGTTGTTCCATATGAGCTTCTGAAACCATTCTCAAAACAAGGGGTCACAGGAATGGGAGTCCCTAATAGCATCTCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

251

Amino Acids

28.46

Weight (kDa)

4.75

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 234	3.6e-112	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
AclWI	GGATC	3 cut(s)	8, 21, 383
AcuI	CTGAAG	2 cut(s)	56, 152
AfaI	GTAC	1 cut(s)	326
AgsI	TTSAA	4 cut(s)	50, 241, 467, 595
AhdI	GACNNNNNGTC	1 cut(s)	294
AluBI	AGCT	5 cut(s)	40, 166, 365, 613, 691
AluI	AGCT	5 cut(s)	40, 166, 365, 613, 691
AlwI	GGATC	3 cut(s)	8, 21, 383
AoxI	GGCC	2 cut(s)	199, 230
ApeKI	GCWGC	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	701
AsuHPI	GGTGA	4 cut(s)	118, 298, 504, 545
BamHI	GGATCC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	57, 213
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	4 cut(s)	65, 400, 475, 556
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	157
BfaI	CTAG	2 cut(s)	141, 614
BfmI	CTRYAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmeRI	GACNNNNNGTC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	15, 546
BmsI	GCATC	2 cut(s)	79, 568
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	2 cut(s)	57, 213
BsaJI	CCNNGG	2 cut(s)	224, 396
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bse1I	ACTGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	224, 396
BseGI	GGATG	4 cut(s)	94, 290, 392, 583
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	413, 536
BseXI	GCAGC	1 cut(s)	317
BshFI	GGCC	2 cut(s)	201, 232
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	2 cut(s)	201, 232
Bsp143I	GATC	4 cut(s)	13, 157, 253, 388
Bsp19I	CCATGG	1 cut(s)	224
BspANI	GGCC	2 cut(s)	201, 232
BspLI	GGNNCC	2 cut(s)	15, 546
BspPI	GGATC	3 cut(s)	8, 21, 383
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	224, 396
BssMI	GATC	4 cut(s)	13, 157, 253, 388
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	478, 602
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	94, 290, 392, 583
BstKTI	GATC	4 cut(s)	16, 160, 256, 391
BstMBI	GATC	4 cut(s)	13, 157, 253, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	379
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	2 cut(s)	57, 213
BstX2I	RGATCY	3 cut(s)	13, 253, 388
BstYI	RGATCY	3 cut(s)	13, 253, 388
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	201, 232
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	4 cut(s)	94, 290, 392, 583
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	107, 315, 483
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	6 cut(s)	29, 203, 225, 302, 376, 381
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	4 cut(s)	15, 159, 255, 390
DpnII	GATC	4 cut(s)	13, 157, 253, 388
DraI	TTTAAA	1 cut(s)	606
DriI	GACNNNNNGTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	56, 152
EcoT14I	CCWWGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	6 cut(s)	32, 206, 228, 305, 379, 384
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	6 cut(s)	28, 202, 224, 301, 375, 380
FauNDI	CATATG	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	4 cut(s)	101, 277, 379, 590
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	141, 614
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	201, 232
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	6 cut(s)	32, 206, 228, 305, 379, 384
HinfI	GANTC	2 cut(s)	463, 732
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	4 cut(s)	118, 298, 504, 545
Hpy166II	GTNNAC	3 cut(s)	180, 313, 327
Hpy188I	TCNGA	4 cut(s)	36, 397, 633, 696
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	180, 313, 327
HpyCH4III	ACNGT	2 cut(s)	478, 602
HpyCH4V	TGCA	3 cut(s)	65, 305, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	32, 206, 228, 305, 379, 384
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	13, 157, 253, 388
LmnI	GCTCC	3 cut(s)	163, 544, 668
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	2 cut(s)	79, 568
MaeI	CTAG	2 cut(s)	141, 614
MaeIII	GTNAC	2 cut(s)	286, 718
MalI	GATC	4 cut(s)	15, 159, 255, 390
MboI	GATC	4 cut(s)	13, 157, 253, 388
MboII	GAAGA	4 cut(s)	62, 218, 263, 398
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	3 cut(s)	13, 253, 388
MluCI	AATT	3 cut(s)	45, 279, 621
MlyI	GAGTC	1 cut(s)	741
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	6 cut(s)	4, 391, 394, 466, 514, 627
Mph1103I	ATGCAT	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	4 cut(s)	96, 150, 605, 627
MslI	CAYNNNNRTG	2 cut(s)	586, 725
MspI	CCGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	581
MwoI	GCNNNNNNNGC	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	4 cut(s)	13, 157, 253, 388
NlaIII	CATG	6 cut(s)	32, 206, 228, 305, 379, 384
NlaIV	GGNNCC	2 cut(s)	15, 546
NmuCI	GTSAC	2 cut(s)	286, 718
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	1 cut(s)	379
PctI	GAATGC	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
PshAI	GACNNNNGTC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	572
PspN4I	GGNNCC	2 cut(s)	15, 546
PsuI	RGATCY	3 cut(s)	13, 253, 388
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	586, 725
SaqAI	TTAA	4 cut(s)	96, 150, 605, 627
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	13, 157, 253, 388
SchI	GAGTC	1 cut(s)	741
SetI	ASST	8 cut(s)	42, 168, 358, 367, 405, 615, 654, 693
SfaNI	GCATC	2 cut(s)	79, 568
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	2 cut(s)	586, 725
Sse9I	AATT	3 cut(s)	45, 279, 621
SspMI	CTAG	2 cut(s)	141, 614
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	478, 602
TaqI	TCGA	3 cut(s)	367, 503, 585
TasI	AATT	3 cut(s)	45, 279, 621
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	4 cut(s)	96, 150, 605, 627
Tru9I	TTAA	4 cut(s)	96, 150, 605, 627
TscAI	CASTG	3 cut(s)	107, 315, 483
TseFI	GTSAC	2 cut(s)	286, 718
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	286, 718
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	107, 315, 483
VspI	ATTAAT	1 cut(s)	627
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	2 cut(s)	141, 614
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.