Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

35307991 .. 35309740

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG323500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACAGTCTTACTTACCATCCGTGACACCAAGTGGGTTGAAGTGGCTAAGAGAACTGGAGCTGCAATATTTGCGAGGAAATGGGGAGGGTGAAAGAAAAACGTCCGACAGAATTTATGATTATGATACATACAATGATCTTGGAAATCCTGATAGCGAAGATGATTTGGCTAGGCCCGTGCTTGGCGGCAAAGAGCATCCATACCTGAGGCGCTGCAGAACAGGACAACCAGGAACCAAAAAGGATCCATTATCGGAGGAAAGAAGCAGCAGTGTGTATGTACCAAGAGATGAAGCTTTCGCAGAGGTGAAACAACTGACATTTGCTGCAAAGACCCTGAAATCTGTGCTGCACGCATTGCTCCCGCAACTTGAGATGTCACTTATTAATCCAAACCTAGGATTTCCCTACTTCACAGCCATAGATTCGCTGTTTAATGAAGGAGTCACATTGCCTAAGCCAAAAACTAGTGGGCTTTTTCAGTCTGTCATCCCAAGGCTAGTGAAGGCTGTTAGTGACAGCCAAGACGATCTTTTGCTCTTTGAGACCCCTGAAATAATCGATTGTGATAAATTTTCCTGGTTTAGAGATGAAGAATTTTCTCGGCAAACTCTAGCTGGTCTTAATCCATTTAGTATAGACCTAGTCAAGGAGTGGCCATTGAAAAGTAAACTGGACCCCAAAATTTATGGTCCACCTGAATCATTGATCACAACAGAACTTGTGGAGAAAGAAATCAAAGGTTGTATGACTGTCAATGAGGTAAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

258

Amino Acids

29.25

Weight (kDa)

5.08

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	13 - 255	4.2e-87	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	189, 368
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	659
AcsI	RAATTY	4 cut(s)	114, 575, 599, 687
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	3 cut(s)	185, 401, 652
AgsI	TTSAA	2 cut(s)	43, 667
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	232, 581
AluBI	AGCT	3 cut(s)	64, 299, 620
AluI	AGCT	3 cut(s)	64, 299, 620
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	242, 255
AoxI	GGCC	2 cut(s)	176, 659
ApeKI	GCWGC	5 cut(s)	64, 216, 270, 329, 352
ApoI	RAATTY	4 cut(s)	114, 575, 599, 687
AseI	ATTAAT	1 cut(s)	390
AspA2I	CCTAGG	1 cut(s)	400
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	177, 679, 695
AsuHPI	GGTGA	2 cut(s)	104, 322
AvaII	GGWCC	2 cut(s)	679, 695
AvrII	CCTAGG	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	661
BamHI	GGATCC	1 cut(s)	247
BbvI	GCAGC	5 cut(s)	51, 203, 282, 316, 339
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	234, 583
BclI	TGATCA	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	542
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	6 cut(s)	174, 401, 471, 503, 617, 647
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	6 cut(s)	65, 190, 217, 271, 330, 353
BlnI	CCTAGG	1 cut(s)	400
BlsI	GCNGC	6 cut(s)	66, 191, 218, 272, 331, 354
Bme1390I	CCNGG	2 cut(s)	234, 583
Bme18I	GGWCC	2 cut(s)	679, 695
BmgT120I	GGNCC	3 cut(s)	177, 679, 695
BmiI	GGNNCC	3 cut(s)	238, 249, 681
BmrFI	CCNGG	2 cut(s)	234, 583
BmsI	GCATC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	400, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 401, 652
Bse1I	ACTGG	2 cut(s)	63, 681
Bse21I	CCTNAGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	359, 452
BseBI	CCWGG	2 cut(s)	234, 583
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	400, 497
BseGI	GGATG	3 cut(s)	20, 199, 492
BseLI	CCNNNNNNNGG	3 cut(s)	185, 401, 652
BseMI	GCAATG	2 cut(s)	359, 452
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	63, 681
BseXI	GCAGC	5 cut(s)	51, 203, 282, 316, 339
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	2 cut(s)	178, 661
BshVI	ATCGAT	1 cut(s)	564
BslI	CCNNNNNNNGG	3 cut(s)	185, 401, 652
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	178, 661
Bso31I	GGTCTC	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	139, 247, 532, 711
BspACI	CCGC	2 cut(s)	189, 368
BspANI	GGCC	2 cut(s)	178, 661
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	238, 249, 681
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	2 cut(s)	242, 255
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	359, 452
BsrI	ACTGG	2 cut(s)	63, 681
BssECI	CCNNGG	2 cut(s)	400, 497
BssMI	GATC	4 cut(s)	139, 247, 532, 711
BssT1I	CCWWGG	2 cut(s)	400, 497
Bst2UI	CCWGG	2 cut(s)	234, 583
Bst4CI	ACNGT	2 cut(s)	9, 757
BstAPI	GCANNNNNTGC	2 cut(s)	73, 361
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	50, 209, 459
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	20, 199, 492
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	4 cut(s)	142, 250, 535, 714
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	4 cut(s)	139, 247, 532, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 361
BstNI	CCWGG	2 cut(s)	234, 583
BstSCI	CCNGG	2 cut(s)	232, 581
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	5 cut(s)	51, 203, 282, 316, 339
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	178, 661
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	20, 199, 492
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	177, 679, 695
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	284
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	3 cut(s)	50, 209, 459
DpnI	GATC	4 cut(s)	141, 249, 534, 713
DpnII	GATC	4 cut(s)	139, 247, 532, 711
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	659
Eco130I	CCWWGG	2 cut(s)	400, 497
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	679, 695
Eco81I	CCTNAGG	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoRII	CCWGG	2 cut(s)	232, 581
EcoT14I	CCWWGG	2 cut(s)	400, 497
ErhI	CCWWGG	2 cut(s)	400, 497
FaiI	YATR	9 cut(s)	120, 126, 133, 205, 282, 425, 641, 693, 752
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FauI	CCCGC	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	6 cut(s)	65, 190, 217, 271, 330, 353
FokI	GGATG	3 cut(s)	7, 186, 479
Fsp4HI	GCNGC	6 cut(s)	65, 190, 217, 271, 330, 353
FspBI	CTAG	6 cut(s)	174, 401, 471, 503, 617, 647
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	6 cut(s)	65, 190, 217, 271, 330, 353
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	178, 661
HhaI	GCGC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	3 cut(s)	428, 447, 704
HphI	GGTGA	2 cut(s)	104, 322
Hpy166II	GTNNAC	2 cut(s)	674, 698
Hpy188I	TCNGA	2 cut(s)	109, 259
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	2 cut(s)	674, 698
HpyAV	CCTTC	2 cut(s)	437, 502
HpyCH4III	ACNGT	2 cut(s)	9, 757
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	67, 219, 332, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 361
HpyF3I	CTNAG	3 cut(s)	50, 209, 459
HpySE526I	ACGT	1 cut(s)	104
HspAI	GCGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	4 cut(s)	139, 247, 532, 711
LmnI	GCTCC	2 cut(s)	61, 369
Lsp1109I	GCAGC	5 cut(s)	51, 203, 282, 316, 339
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	6 cut(s)	174, 401, 471, 503, 617, 647
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	4 cut(s)	25, 381, 448, 518
MalI	GATC	4 cut(s)	141, 249, 534, 713
MboI	GATC	4 cut(s)	139, 247, 532, 711
MboII	GAAGA	2 cut(s)	173, 608
MflI	RGATCY	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	661
MluCI	AATT	4 cut(s)	114, 575, 599, 687
MluNI	TGGCCA	1 cut(s)	661
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	71, 82, 204, 253, 301, 757
Mox20I	TGGCCA	1 cut(s)	661
MscI	TGGCCA	1 cut(s)	661
MseI	TTAA	3 cut(s)	390, 438, 627
Msp20I	TGGCCA	1 cut(s)	661
MspR9I	CCNGG	2 cut(s)	234, 583
MvaI	CCWGG	2 cut(s)	234, 583
MwoI	GCNNNNNNNGC	2 cut(s)	73, 361
NdeII	GATC	4 cut(s)	139, 247, 532, 711
NlaIV	GGNNCC	3 cut(s)	238, 249, 681
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	4 cut(s)	25, 381, 448, 518
PfeI	GAWTC	2 cut(s)	428, 704
PflFI	GACNNNGTC	1 cut(s)	647
PkrI	GCNGC	6 cut(s)	66, 191, 218, 272, 331, 354
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	232, 581
PspGI	CCWGG	2 cut(s)	232, 581
PspN4I	GGNNCC	3 cut(s)	238, 249, 681
PspPI	GGNCC	3 cut(s)	177, 679, 695
PstI	CTGCAG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	647
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	390, 438, 627
SatI	GCNGC	6 cut(s)	65, 190, 217, 271, 330, 353
Sau3AI	GATC	4 cut(s)	139, 247, 532, 711
Sau96I	GGNCC	3 cut(s)	177, 679, 695
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	234, 583
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	2 cut(s)	679, 695
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	4 cut(s)	114, 575, 599, 687
SsiI	CCGC	2 cut(s)	189, 368
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	6 cut(s)	174, 401, 471, 503, 617, 647
StyD4I	CCNGG	2 cut(s)	232, 581
StyI	CCWWGG	2 cut(s)	400, 497
TaaI	ACNGT	2 cut(s)	9, 757
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	564
TasI	AATT	4 cut(s)	114, 575, 599, 687
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	428, 704
Tru1I	TTAA	3 cut(s)	390, 438, 627
Tru9I	TTAA	3 cut(s)	390, 438, 627
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	4 cut(s)	25, 381, 448, 518
TseI	GCWGC	5 cut(s)	64, 216, 270, 329, 352
Tsp45I	GTSAC	4 cut(s)	25, 381, 448, 518
TspDTI	ATGAA	4 cut(s)	17, 309, 456, 609
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	280
Tth111I	GACNNNGTC	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	679, 695
VspI	ATTAAT	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	4 cut(s)	114, 575, 599, 687
XmaJI	CCTAGG	1 cut(s)	400
XspI	CTAG	6 cut(s)	174, 401, 471, 503, 617, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.