Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Forward (+)

46202964 .. 46203940

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACAAGCCCCAATGGAAGGAAGTGTCTACCCCAACATGGGGCCACTGGTTGCTGGCTTTGGAGACTTGCTAAAGCCCATGTTTGTGCTCATGATTCGGGCTATCATCAACTTGTCATCCACTGGCTGAGGACTCATTGTTGTACAGAACCATACATAATTGCAGCTAATCAACAACTAAGTGCAATGCATCCCATCTATAGGCTTCTACATCCTCATTTCCGTTATACAATGGAAATCAATGCTCTGGCTCGAGAAAGCCTCATTAATGCAGGTGGAGCCATTGAGACCTGCTTCTCACCAGCAAAGTACTCAATTGAGCTCAGTTCTGCTGCTTACAATAAGCTTTGGCACTTTGACATGGAAGCTTTGCTTGCAGATCTAATCAGAAGGGGAATGGCAGTTGAGGATTCTACAGCTGAGCATGGTGTGAAGCTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTTTGTGGGATGCCATTAAGGAGTGGGTGGGTGACTATGTGAACCACTATTATCCAGTCCCAACCCTTGTTGAATCTGATAACGAGCTTCAAGCTTGGTGGACAGAAGTTAGAACGGAAGGCCATGCAGACAAAAAAGATGAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

207

Amino Acids

23.63

Weight (kDa)

5.76

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	10 - 207	1.3e-110	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	2 cut(s)	263, 299
AccI	GTMKAC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	145, 311
AfiI	CCNNNNNNNGG	5 cut(s)	18, 38, 39, 40, 201
AgsI	TTSAA	3 cut(s)	446, 548, 566
AluBI	AGCT	8 cut(s)	167, 322, 346, 368, 419, 436, 562, 569
AluI	AGCT	8 cut(s)	167, 322, 346, 368, 419, 436, 562, 569
Alw21I	GWGCWC	2 cut(s)	91, 324
Alw26I	GTCTC	3 cut(s)	58, 281, 476
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	42, 595
ApeKI	GCWGC	2 cut(s)	164, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	291, 518
AvaI	CYCGRG	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	2 cut(s)	91, 324
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	176, 319
BccI	CCATC	2 cut(s)	203, 461
BcoDI	GTCTC	3 cut(s)	58, 281, 476
BfmI	CTRYAG	2 cut(s)	199, 414
BfuAI	ACCTGC	2 cut(s)	263, 299
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	2 cut(s)	165, 333
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	2 cut(s)	166, 334
BmcAI	AGTACT	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	2 cut(s)	43, 280
BmsI	GCATC	2 cut(s)	199, 475
BpiI	GAAGAC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
Bpu10I	CCTNAGC	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	420
BsaI	GGTCTC	2 cut(s)	281, 476
Bsc4I	CCNNNNNNNGG	5 cut(s)	18, 38, 39, 40, 201
Bse1I	ACTGG	3 cut(s)	52, 128, 530
Bse3DI	GCAATG	1 cut(s)	192
BseGI	GGATG	4 cut(s)	117, 190, 211, 490
BseLI	CCNNNNNNNGG	5 cut(s)	18, 38, 39, 40, 201
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	119, 337, 411
BseNI	ACTGG	3 cut(s)	52, 128, 530
BseXI	GCAGC	2 cut(s)	176, 319
BshFI	GGCC	2 cut(s)	44, 597
BsiHKAI	GWGCWC	2 cut(s)	91, 324
BsiHKCI	CYCGRG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	5 cut(s)	18, 38, 39, 40, 201
BsmAI	GTCTC	3 cut(s)	58, 281, 476
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	2 cut(s)	44, 597
Bso31I	GGTCTC	2 cut(s)	281, 476
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	91, 324
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	44, 597
BspCNI	CTCAG	3 cut(s)	120, 336, 412
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	43, 280
BspMI	ACCTGC	2 cut(s)	263, 299
BspTNI	GGTCTC	2 cut(s)	281, 476
BsrDI	GCAATG	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	52, 128, 530
BssMI	GATC	1 cut(s)	379
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	56, 375
BstDEI	CTNAG	4 cut(s)	128, 179, 323, 420
BstF5I	GGATG	4 cut(s)	117, 190, 211, 490
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	3 cut(s)	58, 281, 476
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 374
BstSFI	CTRYAG	2 cut(s)	199, 414
BstV1I	GCAGC	2 cut(s)	176, 319
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	44, 597
BtsCI	GGATG	4 cut(s)	117, 190, 211, 490
BtsIMutI	CAGTG	2 cut(s)	45, 121
BveI	ACCTGC	2 cut(s)	263, 299
Cac8I	GCNNGC	2 cut(s)	56, 375
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	144, 310
CspCI	CAANNNNNGTGG	2 cut(s)	554, 589
CviAII	CATG	6 cut(s)	38, 80, 92, 361, 425, 599
CviQI	GTAC	2 cut(s)	144, 310
DdeI	CTNAG	4 cut(s)	128, 179, 323, 420
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	2 cut(s)	281, 476
Eco53kI	GAGCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	322
EcoT22I	ATGCAT	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	6 cut(s)	41, 83, 95, 364, 428, 602
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	6 cut(s)	37, 79, 91, 360, 424, 598
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	165, 333
FokI	GGATG	4 cut(s)	104, 177, 198, 497
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	165, 333
GluI	GCNGC	2 cut(s)	165, 333
HaeIII	GGCC	2 cut(s)	44, 597
Hin1II	CATG	6 cut(s)	41, 83, 95, 364, 428, 602
HindIII	AAGCTT	3 cut(s)	344, 366, 567
HinfI	GANTC	4 cut(s)	95, 133, 410, 548
HphI	GGTGA	2 cut(s)	291, 518
Hpy166II	GTNNAC	3 cut(s)	29, 517, 576
Hpy188I	TCNGA	2 cut(s)	389, 553
Hpy188III	TCNNGA	2 cut(s)	92, 254
Hpy8I	GTNNAC	3 cut(s)	29, 517, 576
HpyAV	CCTTC	3 cut(s)	12, 384, 587
HpyCH4V	TGCA	7 cut(s)	164, 185, 190, 272, 377, 461, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 374
HpyF3I	CTNAG	4 cut(s)	128, 179, 323, 420
Hsp92II	CATG	6 cut(s)	41, 83, 95, 364, 428, 602
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	8 cut(s)	33, 40, 109, 233, 258, 304, 315, 543
Lsp1109I	GCAGC	2 cut(s)	176, 319
LweI	GCATC	2 cut(s)	199, 475
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	1 cut(s)	458
MfeI	CAATTG	2 cut(s)	315, 441
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	91, 324
MluCI	AATT	3 cut(s)	159, 315, 441
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	123, 225, 272, 400
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	2 cut(s)	267, 492
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	419
MunI	CAATTG	2 cut(s)	315, 441
MwoI	GCNNNNNNNGC	2 cut(s)	278, 374
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	6 cut(s)	41, 83, 95, 364, 428, 602
NlaIV	GGNNCC	2 cut(s)	43, 280
NmuCI	GTSAC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	95, 410, 548
PkrI	GCNGC	2 cut(s)	166, 334
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	43, 280
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	145, 311
RsaNI	GTAC	2 cut(s)	144, 310
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	267, 492
SatI	GCNGC	2 cut(s)	165, 333
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	91, 324
SfaNI	GCATC	2 cut(s)	199, 475
SfcI	CTRYAG	2 cut(s)	199, 414
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	159, 315, 441
SstI	GAGCTC	1 cut(s)	324
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	159, 315, 441
TatI	WGTACW	2 cut(s)	143, 309
TfiI	GAWTC	3 cut(s)	95, 410, 548
Tru1I	TTAA	2 cut(s)	267, 492
Tru9I	TTAA	2 cut(s)	267, 492
TscAI	CASTG	2 cut(s)	52, 128
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	164, 332
Tsp45I	GTSAC	1 cut(s)	506
TspGWI	ACGGA	2 cut(s)	212, 605
TspRI	CASTG	2 cut(s)	52, 128
VspI	ATTAAT	1 cut(s)	267
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	28
ZrmI	AGTACT	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.