Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353481.1

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1018

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353481.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 872 bp

atggaaatcaatgctctggctcgagaaagcctcattaatgcaggtggagccattgagacctgcttctcaccagcaaagtactcaattgagcttagttctgctgcttacaaccagctttggcgctttgacatggaagctttgcctgcagatctaatcagaaggggaatggcagttgaggattctacagctgagcatggtgtgaagctaacaattgaagactacccatttgcaaatgatggtctcattttgtgggatgccattaaggagtgggtgggtgactatgtgaaccactattatccagacccaactcttgttgaatctgataacgagcttcaagcttggtggacagaagttagaacggaaggccatgcagacaaaaaagatgaaccatggtggcctgttttgaaaaccccagaagatctcattcatattttgacaactataatttgggttacagctggacatcatgctgcggtgaactttggtcagtacatgtatgctggatacttcccaaaccggcctacaatagctcgaagcaacatgccaactgaagatccaaacgacgatcttttcaaggtatttttgaagaaaccagaagctgcattgctgaggtgcttcccctcacagattcaagcaacaaaagtgatggctctcttggatgtattatcgaaccattcacccgatgaggagtacattggtgggaatgtggagtcatcttgggctgaaaacccggtgataaacgcagctttcgagcggttcaatggcaatttgaagaagctagaaggaattatcgatgagaggaacaccaatatgaagctgaaaaacagagttggagcaggggttgttccatatgagcttttgaagccattctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

291

Amino Acids

32.89

Weight (kDa)

4.8

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	32
Acc36I	ACCTGC	2 cut(s)	32, 68
AccBSI	CCGCTC	1 cut(s)	754
AciI	CCGC	2 cut(s)	473, 754
AclWI	GGATC	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	3 cut(s)	80, 491, 692
AflIII	ACRYGT	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	50, 245
AlwI	GGATC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	3 cut(s)	364, 395, 518
ApeKI	GCWGC	4 cut(s)	101, 470, 599, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AseI	ATTAAT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	866
AspLEI	GCGC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	5 cut(s)	60, 287, 487, 669, 745
AvaI	CYCGRG	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	608
BbvI	GCAGC	4 cut(s)	88, 457, 586, 755
BccI	CCATC	2 cut(s)	230, 640
BciVI	GTATCC	1 cut(s)	497
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	2 cut(s)	50, 245
BfaI	CTAG	1 cut(s)	779
BfmI	CTRYAG	2 cut(s)	144, 183
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	2 cut(s)	32, 68
BfuI	GTATCC	1 cut(s)	497
BglII	AGATCT	2 cut(s)	148, 418
BisI	GCNGC	4 cut(s)	102, 471, 600, 744
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	103, 472, 601, 745
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
Bpu10I	CCTNAGC	1 cut(s)	608
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	792
BsaI	GGTCTC	2 cut(s)	50, 245
BsaJI	CCNNGG	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bse118I	RCCGGY	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	259, 664
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	180, 599
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	4 cut(s)	88, 457, 586, 755
BshFI	GGCC	3 cut(s)	366, 397, 520
BshVI	ATCGAT	1 cut(s)	792
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	517, 731
BsmAI	GTCTC	2 cut(s)	50, 245
BsnI	GGCC	3 cut(s)	366, 397, 520
Bso31I	GGTCTC	2 cut(s)	50, 245
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	148, 418, 553, 565
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	389
BspACI	CCGC	2 cut(s)	473, 754
BspANI	GGCC	3 cut(s)	366, 397, 520
BspCNI	CTCAG	2 cut(s)	181, 600
BspDI	ATCGAT	1 cut(s)	792
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	2 cut(s)	32, 68
BspPI	GGATC	1 cut(s)	548
BspTNI	GGTCTC	2 cut(s)	50, 245
BsrBI	CCGCTC	1 cut(s)	754
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	4 cut(s)	148, 418, 553, 565
BssT1I	CCWWGG	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	92, 189, 608
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	259, 664
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	151, 421, 556, 568
BstMAI	GTCTC	2 cut(s)	50, 245
BstMBI	GATC	4 cut(s)	148, 418, 553, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 143, 862
BstNSI	RCATGY	2 cut(s)	496, 544
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	2 cut(s)	144, 183
BstV1I	GCAGC	4 cut(s)	88, 457, 586, 755
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	3 cut(s)	148, 418, 553
BstYI	RGATCY	3 cut(s)	148, 418, 553
Bsu15I	ATCGAT	1 cut(s)	792
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	366, 397, 520
BsuTUI	ATCGAT	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	259, 664
BveI	ACCTGC	2 cut(s)	32, 68
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	516
ClaI	ATCGAT	1 cut(s)	792
Csp6I	GTAC	3 cut(s)	79, 490, 691
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	7 cut(s)	130, 194, 368, 390, 467, 493, 541
CviQI	GTAC	3 cut(s)	79, 490, 691
DdeI	CTNAG	3 cut(s)	92, 189, 608
DpnI	GATC	4 cut(s)	150, 420, 555, 567
DpnII	GATC	4 cut(s)	148, 418, 553, 565
Eco130I	CCWWGG	1 cut(s)	389
Eco31I	GGTCTC	2 cut(s)	50, 245
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	7 cut(s)	133, 197, 371, 393, 470, 496, 544
FatI	CATG	7 cut(s)	129, 193, 367, 389, 466, 492, 540
FauNDI	CATATG	1 cut(s)	850
Fnu4HI	GCNGC	4 cut(s)	102, 471, 600, 744
FokI	GGATG	2 cut(s)	266, 671
Fsp4HI	GCNGC	4 cut(s)	102, 471, 600, 744
FspBI	CTAG	1 cut(s)	779
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	102, 471, 600, 744
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	366, 397, 520
HapII	CCGG	2 cut(s)	517, 731
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	7 cut(s)	133, 197, 371, 393, 470, 496, 544
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	2 cut(s)	135, 336
HinfI	GANTC	4 cut(s)	179, 317, 628, 710
HpaII	CCGG	2 cut(s)	517, 731
HphI	GGTGA	5 cut(s)	60, 287, 487, 669, 745
Hpy166II	GTNNAC	3 cut(s)	286, 345, 478
Hpy188I	TCNGA	2 cut(s)	158, 322
Hpy188III	TCNNGA	2 cut(s)	23, 299
Hpy8I	GTNNAC	3 cut(s)	286, 345, 478
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	3 cut(s)	153, 356, 776
HpyCH4V	TGCA	5 cut(s)	41, 146, 230, 371, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 143, 862
HpyF3I	CTNAG	3 cut(s)	92, 189, 608
Hsp92II	CATG	7 cut(s)	133, 197, 371, 393, 470, 496, 544
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	148, 418, 553, 565
LmnI	GCTCC	2 cut(s)	47, 833
Lsp1109I	GCAGC	4 cut(s)	88, 457, 586, 755
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	779
MaeIII	GTNAC	2 cut(s)	275, 451
MalI	GATC	4 cut(s)	150, 420, 555, 567
MbiI	CCGCTC	1 cut(s)	754
MboI	GATC	4 cut(s)	148, 418, 553, 565
MboII	GAAGA	5 cut(s)	227, 428, 563, 598, 784
MfeI	CAATTG	2 cut(s)	84, 210
MflI	RGATCY	3 cut(s)	148, 418, 553
MluCI	AATT	5 cut(s)	84, 210, 444, 766, 786
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	6 cut(s)	41, 169, 603, 631, 679, 792
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	2 cut(s)	36, 261
MslI	CAYNNNNRTG	1 cut(s)	809
MspA1I	CMGCKG	2 cut(s)	188, 458
MspI	CCGG	2 cut(s)	517, 731
MspR9I	CCNGG	1 cut(s)	731
MunI	CAATTG	2 cut(s)	84, 210
MwoI	GCNNNNNNNGC	3 cut(s)	47, 143, 862
NciI	CCSGG	1 cut(s)	731
NcoI	CCATGG	1 cut(s)	389
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	4 cut(s)	148, 418, 553, 565
NlaIII	CATG	7 cut(s)	133, 197, 371, 393, 470, 496, 544
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	2 cut(s)	496, 544
PaeR7I	CTCGAG	1 cut(s)	21
PaqCI	CACCTGC	1 cut(s)	32
PciI	ACATGT	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	179, 317, 628
PkrI	GCNGC	4 cut(s)	103, 472, 601, 745
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PscI	ACATGT	1 cut(s)	492
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	3 cut(s)	148, 418, 553
PvuII	CAGCTG	2 cut(s)	188, 458
RsaI	GTAC	3 cut(s)	80, 491, 692
RsaNI	GTAC	3 cut(s)	79, 490, 691
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	2 cut(s)	36, 261
SatI	GCNGC	4 cut(s)	102, 471, 600, 744
Sau3AI	GATC	4 cut(s)	148, 418, 553, 565
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	1 cut(s)	731
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	144, 183
Sfr274I	CTCGAG	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	84, 210, 444, 766, 786
SsiI	CCGC	2 cut(s)	473, 754
SspMI	CTAG	1 cut(s)	779
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	389
TaqI	TCGA	5 cut(s)	22, 532, 668, 750, 792
TasI	AATT	5 cut(s)	84, 210, 444, 766, 786
TatI	WGTACW	3 cut(s)	78, 489, 690
TfiI	GAWTC	3 cut(s)	179, 317, 628
Tru1I	TTAA	2 cut(s)	36, 261
Tru9I	TTAA	2 cut(s)	36, 261
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	4 cut(s)	101, 470, 599, 743
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	399, 416, 827
TspGWI	ACGGA	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	36
XceI	RCATGY	2 cut(s)	496, 544
XhoI	CTCGAG	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	1 cut(s)	779
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.