MD03G1021200.v1.1

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
1647286 .. 1655180
7895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1021200.v1.1.491

Sequence Viewer

Length: 2823 bp
ATGTTGAATCCCCAAGTTCACCAATCAAAATCCGCCCAAACTCTCTTCCTTCACAAGCCATTTATCCATGGCAGTGCCGGAAGTTCTTTTCCTGTCTGGTCAAGGCCCTCCTTCCTACCCGAAAAATACAGAAGCATAAAAGCCACAAGTAGTAGTAGTAGTAGTAGTGATAACAGTAATACTCCCACTACCACGACTAAAACTACTACTACTACTACTAGAATTACTACTACTGCGATTCCAAACCCTATTACTCCCACTCCTCCTCCTACCACCACCACCACCACCACCATTGTGACTACTGAAGTCGTCACCAAGAAGTTCATTAGTGTTAAGGCCACCCTAACCGTGACGCTTACAGTCGGAGGCTTTCTCTCAAACCTTGGTCTAAACCGAGGACTTGATGATATAACAGATTTGCTCGGTCAATCGCTCTTATTGGAGCTTGTTAGCGCTGAGCTTCATCCAGAAACCGGAGAGGAGAAGGAGAAGGTTGCGGGGTATGCACACAGGAGTCGCCGACAGGAAGGTGAGATAATATACGAGACAGATATCAAAGTACCAGTAGATTTTGGGGAGATAGGTGCTATTTTGGTAGAGAATGAGCACCACAAGGAGATGTTTCTCAAGGAAATTGTCGTCGATGGCCTCCCATGTGGCTCTGTTCATCATAGCTGTAATTCTTGGATTCACTCCAAGTATGACAATCCTGAAAAGAGGGTCTTTTTCACAAACAAGTCATACTTGCCATCTCAAACACCAAGCGGGTTAGTGAGGCTAAGAGAAGAGGAGCTCTTGACTTTGCGAGGGAATGGCCAAGGAGAGCGGAAGAGCTTTGAGAGGATATATGACTATGATGTTTACAACGATCTTGGTGATCCTGATAAGAATTTAAGACTCCAAAGACCAGTACTTGGTGGCAAAGAATTCCCGCATCCCAGACGTTGCAGAACTGGACGACCACCATGTGACACAGATCCGTTGTCGGAGAAAAGGAGCAGAAAACATTGGTACGTTCCTAGAGATGAAGCCTTCTCAGAGGTAAAGCAGCTAACATTTTCAGCAAAGACGTTGTACTCTGTGATGCACGCATTGGTACCATCGCTGGAGATGGCGATTGCCGACACTAATCTTGGCTTCAAGTACTTCACGGCCATAGACTCACTTTTTCACGAGGGGATTCACTTGCCTCCCTTCAAGGAACAAGGGGTTCTCAAAGCCCTGCTTCCCAGGCTAGTCAACGTTATGGCTACTGGAGATGACGTTTTACGTTTTGTACCCCCAGAAACGATGAATAGGGACAAATTCTTTTGGTTTAGGGACGAGGAGTTTGGTAGGCAGACTCTTGCAGGTCTCAACCCATACAGCATCAAGTTGGTGACGGAATGGCCATTGAAGAGTGAACTGGACCCAGCGATATATGGCCCGCCTGAATCAGCTATCACCAATGAAATAATTGAGAGAGAAATTGGAGGTTTCGCAACCATTACTGAGGCCATCAGAGAAAAGAAGTTGTTTATTTTAGATTATCATGATTTGTTTTTACCCTATGTGAGCAAAGTAAGAAAGCTCGAAGGTACCACACTATATGGATCGAGGACTTTGTTTTTTCTTACCCCAGAAGGCACACTCAGGCCACTGGTCATTGAGCTGACAAGGCCACCAATGGACGGAAAGCCACAATGGAAGCAAGTTTTCCAACCGGCGTGGAACTCCACGGATGTCTGGCTCTGGAGGCTTGCTAAAGCTCATGTCCTTGCCCACGATTCTGGTTATCATCAGCTTGTTAGTCATTGGCTTCGAACACACTGTGCCACAGAACCCTACATAATCGCCACAAATCGACAACTGAGTGTCATGCACCCAATCTATAGATTGTTACATCCCCATTTCAGATACACTATGGAGATTAATTCTCTTGCTCGTGATTCACTCATCAATGCTGACGGCATCATCGAAACCTCATTTTCTCCCGGAAAGTACTCCCTTGAGCTTTGCTCTATTGCCTATGGGAAGGAATGGCGGTTTGACCAAGAGGCACTCCCAGCAGACCTTATTAGAAGGGGCATGGCTGTTGAGGACCCAACTGCTCCACATGGCCTAAGGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTCCTCTTATGGGATGCAATTAAACAATGGGTCACTGACTACGTAAACCACTACTACCCCGACTCCATCCTTGTCCAGACTGATGAAGAGCTCCAAGCATGGTGGACAGAAATCAAAACAGTTGGCCATGCAGACAAAAAAGATGAGCCATGGTGGCCAGAACTCAACACTCCGGAAGACCTAATGGGCATCATCACAACAATGGTTTGGGTCGCATCTGGTCACCATGCAGCTGTCAACTTTGGCCAGTATGCCTATGGAGGTTATTTTCCTAACAGGCCAACAGTTGCAAGGACCAATGTGCCCACTGAGGACCCCTCAGAAGAGGATTGGAAAAATTTCATAAAAAAGCCTGAAAGTGCACTTTTGCAATGCTTTCCTTCACAAATCCAAGCAACAAGAATCATGGCTGTTTTGGACATTTTGTCGAATCACTCACCGGATGAAGAGTACATTGGAGAGAAGATGGAGCAGGCGTGGGCTGAAGAGCCCGTTATAAAGGCGGCATTTGAACGGTTTAAAGGGAGGTTGTTGGCGCTGGAAGGATCTATCGATGATCGAAATGCCAATAGTGAGTTGAAGAACCGACATGGAGCTGGGGTTCTGCCTTACGAGCTTTTGAAACCCTTTTCTCAACCTGGGGTTACCGGAAAGGGAGTTCCATATAGCATCTCTATTTGA

Protein Analysis

941

Amino Acids

106.48

Weight (kDa)

5.98

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 181 - 243 2e-09 PLAT/LH2 domain
Lipoxygenase PF00305 256 - 923 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2639
Acc36I ACCTGC 1 cut(s) 1340
Acc65I GGTACC 2 cut(s) 1096, 1577
AccB1I GGYRCC 2 cut(s) 1096, 1577
AccB7I CCANNNNNTGG 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 826
AccIII TCCGGA 1 cut(s) 2314
AciI CCGC 8 cut(s) 33, 497, 765, 826, 932, 1427, 2023, 2645
AclI AACGTT 1 cut(s) 1242
AclWI GGATC 4 cut(s) 872, 971, 1600, 2695
AcoI YGGCCR 6 cut(s) 814, 1152, 1388, 2266, 2297, 2386
AcsI RAATTY 4 cut(s) 889, 926, 1304, 2479
AcuI CTGAAG 2 cut(s) 324, 2646
AdeI CACNNNGTG 2 cut(s) 968, 1811
AfeI AGCGCT 1 cut(s) 454
AfiI CCNNNNNNNGG 4 cut(s) 473, 914, 1670, 2152
AgsI TTSAA 8 cut(s) 7, 1141, 1198, 1396, 2117, 2654, 2722, 2764
AhdI GACNNNNNGTC 1 cut(s) 2566
AjnI CCWGG 2 cut(s) 1229, 2779
AjuI GAANNNNNNNTTGG 2 cut(s) 2580, 2612
AleI CACNNNNGTG 1 cut(s) 293
AloI GAACNNNNNNTCC 4 cut(s) 2727, 2759, 2784, 2816
Alw21I GWGCWC 4 cut(s) 609, 795, 2235, 2506
Alw26I GTCTC 3 cut(s) 539, 1358, 2147
Alw44I GTGCAC 1 cut(s) 2502
AlwI GGATC 4 cut(s) 872, 971, 1600, 2695
Aor13HI TCCGGA 1 cut(s) 2314
Aor51HI AGCGCT 1 cut(s) 454
ApaLI GTGCAC 1 cut(s) 2502
ApeKI GCWGC 2 cut(s) 1048, 2372
ApoI RAATTY 4 cut(s) 889, 926, 1304, 2479
ArsI GACNNNNNNTTYG 4 cut(s) 1313, 1345, 2111, 2143
AseI ATTAAT 1 cut(s) 1911
Asp700I GAANNNNTTC 1 cut(s) 2480
Asp718I GGTACC 2 cut(s) 1096, 1577
AspLEI GCGC 2 cut(s) 455, 2680
AspS9I GGNCC 6 cut(s) 105, 1408, 1424, 2080, 2436, 2455
AsuC2I CCSGG 1 cut(s) 1974
AsuHPI GGTGA 8 cut(s) 11, 304, 542, 887, 1390, 1435, 2357, 2571
AsuII TTCGAA 1 cut(s) 1801
AvaII GGWCC 4 cut(s) 1408, 2080, 2436, 2455
AxyI CCTNAGG 1 cut(s) 2102
BaeGI GKGCMC 2 cut(s) 2448, 2506
BalI TGGCCA 5 cut(s) 816, 1390, 2268, 2299, 2388
BanI GGYRCC 2 cut(s) 1096, 1577
BanII GRGCYC 3 cut(s) 795, 2235, 2634
BauI CACGAG 2 cut(s) 1172, 1923
BbsI GAAGAC 2 cut(s) 2124, 2325
Bbv12I GWGCWC 4 cut(s) 609, 795, 2235, 2506
BbvI GCAGC 2 cut(s) 1060, 2384
BccI CCATC 8 cut(s) 638, 757, 1105, 1108, 1505, 2132, 2216, 2602
BceAI ACGGC 2 cut(s) 1167, 1963
BciT130I CCWGG 2 cut(s) 1231, 2781
BcnI CCSGG 1 cut(s) 1974
BcoDI GTCTC 3 cut(s) 539, 1358, 2147
BfaI CTAG 3 cut(s) 219, 1020, 1235
BfmI CTRYAG 1 cut(s) 1870
BfoI RGCGCY 2 cut(s) 456, 2681
BfuAI ACCTGC 1 cut(s) 1340
BglI GCCNNNNNGGC 1 cut(s) 2296
BisI GCNGC 3 cut(s) 1049, 2373, 2646
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 3 cut(s) 1050, 2374, 2647
BmcAI AGTACT 3 cut(s) 912, 1145, 1982
Bme1390I CCNGG 3 cut(s) 1231, 1974, 2781
Bme18I GGWCC 4 cut(s) 1408, 2080, 2436, 2455
BmeRI GACNNNNNGTC 1 cut(s) 2566
BmgT120I GGNCC 6 cut(s) 105, 1408, 1424, 2080, 2436, 2455
BmiI GGNNCC 5 cut(s) 1098, 1410, 1579, 2082, 2457
BmrFI CCNGG 3 cut(s) 1231, 1974, 2781
BmsI GCATC 7 cut(s) 943, 1074, 1377, 1959, 2146, 2340, 2366
BpiI GAAGAC 2 cut(s) 2124, 2325
BplI GAGNNNNNCTC 6 cut(s) 357, 389, 1982, 2014, 2444, 2476
BpmI CTGGAG 3 cut(s) 1127, 1275, 1753
Bpu1102I GCTNAGC 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 1801
BpuEI CTTGAG 2 cut(s) 611, 2009
BpuMI CCSGG 1 cut(s) 1974
Bsa29I ATCGAT 1 cut(s) 2694
BsaAI YACGTR 1 cut(s) 2185
BsaI GGTCTC 2 cut(s) 1358, 2147
BsaJI CCNNGG 8 cut(s) 67, 382, 394, 817, 1229, 1716, 2291, 2780
BsaWI WCCGGW 4 cut(s) 473, 2314, 2581, 2789
Bsc4I CCNNNNNNNGG 4 cut(s) 473, 914, 1670, 2152
Bse118I RCCGGY 1 cut(s) 1702
Bse1I ACTGG 7 cut(s) 563, 908, 958, 1258, 1410, 1644, 2389
Bse21I CCTNAGG 1 cut(s) 2102
Bse3DI GCAATG 1 cut(s) 2519
BseAI TCCGGA 1 cut(s) 2314
BseBI CCWGG 2 cut(s) 1231, 2781
BseCI ATCGAT 1 cut(s) 2694
BseDI CCNNGG 8 cut(s) 67, 382, 394, 817, 1229, 1716, 2291, 2780
BseGI GGATG 7 cut(s) 463, 934, 1726, 1882, 2161, 2208, 2590
BseLI CCNNNNNNNGG 4 cut(s) 473, 914, 1670, 2152
BseMI GCAATG 1 cut(s) 2519
BseMII CTCAG 7 cut(s) 447, 1050, 1482, 1645, 1841, 2442, 2475
BseNI ACTGG 7 cut(s) 563, 908, 958, 1258, 1410, 1644, 2389
BseRI GAGGAG 6 cut(s) 252, 255, 494, 803, 1340, 2135
BseSI GKGCMC 2 cut(s) 2448, 2506
BseXI GCAGC 2 cut(s) 1060, 2384
BseYI CCCAGC 3 cut(s) 1411, 2044, 2738
BshNI GGYRCC 2 cut(s) 1096, 1577
BshVI ATCGAT 1 cut(s) 2694
BsiHKAI GWGCWC 4 cut(s) 609, 795, 2235, 2506
BsiSI CCGG 7 cut(s) 78, 474, 1703, 1974, 2315, 2582, 2790
BslFI GGGAC 2 cut(s) 1313, 1334
BslI CCNNNNNNNGG 4 cut(s) 473, 914, 1670, 2152
BsmAI GTCTC 3 cut(s) 539, 1358, 2147
BsmFI GGGAC 2 cut(s) 1313, 1334
Bso31I GGTCTC 2 cut(s) 1358, 2147
Bsp119I TTCGAA 1 cut(s) 1801
Bsp1286I GDGCHC 6 cut(s) 609, 795, 2235, 2448, 2506, 2634
Bsp13I TCCGGA 1 cut(s) 2314
Bsp143I GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
Bsp1720I GCTNAGC 1 cut(s) 456
Bsp19I CCATGG 2 cut(s) 67, 2291
BspACI CCGC 8 cut(s) 33, 497, 765, 826, 932, 1427, 2023, 2645
BspCNI CTCAG 7 cut(s) 448, 1049, 1483, 1644, 1842, 2443, 2474
BspDI ATCGAT 1 cut(s) 2694
BspEI TCCGGA 1 cut(s) 2314
BspHI TCATGA 1 cut(s) 1531
BspLI GGNNCC 5 cut(s) 1098, 1410, 1579, 2082, 2457
BspMI ACCTGC 1 cut(s) 1340
BspPI GGATC 4 cut(s) 872, 971, 1600, 2695
BspQI GCTCTTC 3 cut(s) 824, 2223, 2622
BspT104I TTCGAA 1 cut(s) 1801
BspT107I GGYRCC 2 cut(s) 1096, 1577
BspTNI GGTCTC 2 cut(s) 1358, 2147
BsrBI CCGCTC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 2519
BsrFI RCCGGY 1 cut(s) 1702
BsrI ACTGG 7 cut(s) 563, 908, 958, 1258, 1410, 1644, 2389
BssAI RCCGGY 1 cut(s) 1702
BssECI CCNNGG 8 cut(s) 67, 382, 394, 817, 1229, 1716, 2291, 2780
BssMI GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
BssSI CACGAG 2 cut(s) 1172, 1923
BssT1I CCWWGG 4 cut(s) 67, 382, 817, 2291
Bst2BI CACGAG 2 cut(s) 1172, 1923
Bst2UI CCWGG 2 cut(s) 1231, 2781
Bst4CI ACNGT 7 cut(s) 176, 349, 361, 1811, 2263, 2428, 2658
Bst6I CTCTTC 8 cut(s) 50, 780, 824, 1391, 2223, 2460, 2583, 2622
BstBAI YACGTR 1 cut(s) 2185
BstBI TTCGAA 1 cut(s) 1801
BstC8I GCNNGC 4 cut(s) 1089, 1427, 1740, 2616
BstDEI CTNAG 9 cut(s) 456, 779, 1036, 1491, 1631, 1850, 2102, 2451, 2461
BstDSI CCRYGG 3 cut(s) 67, 1716, 2291
BstEII GGTNACC 2 cut(s) 2363, 2785
BstF5I GGATG 7 cut(s) 463, 934, 1726, 1882, 2161, 2208, 2590
BstH2I RGCGCY 2 cut(s) 456, 2681
BstHHI GCGC 2 cut(s) 455, 2680
BstKTI GATC 6 cut(s) 871, 880, 979, 1595, 2690, 2701
BstMAI GTCTC 3 cut(s) 539, 1358, 2147
BstMBI GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
BstMWI GCNNNNNNNGC 7 cut(s) 503, 1231, 1657, 1735, 2045, 2296, 2755
BstNI CCWGG 2 cut(s) 1231, 2781
BstPI GGTNACC 2 cut(s) 2363, 2785
BstSCI CCNGG 3 cut(s) 1229, 1972, 2779
BstSFI CTRYAG 1 cut(s) 1870
BstSLI GKGCMC 2 cut(s) 2448, 2506
BstSNI TACGTA 1 cut(s) 2185
BstV1I GCAGC 2 cut(s) 1060, 2384
BstV2I GAAGAC 2 cut(s) 2124, 2325
BstX2I RGATCY 2 cut(s) 976, 2687
BstXI CCANNNNNNTGG 1 cut(s) 1769
BstYI RGATCY 2 cut(s) 976, 2687
Bsu15I ATCGAT 1 cut(s) 2694
Bsu36I CCTNAGG 1 cut(s) 2102
BsuTUI ATCGAT 1 cut(s) 2694
BtgI CCRYGG 3 cut(s) 67, 1716, 2291
BtgZI GCGATG 1 cut(s) 1086
BtsCI GGATG 7 cut(s) 463, 934, 1726, 1882, 2161, 2208, 2590
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 5 cut(s) 79, 1637, 1807, 2175, 2448
BveI ACCTGC 1 cut(s) 1340
Cac8I GCNNGC 4 cut(s) 1089, 1427, 1740, 2616
CciI TCATGA 1 cut(s) 1531
CfoI GCGC 2 cut(s) 455, 2680
Cfr10I RCCGGY 1 cut(s) 1702
Cfr13I GGNCC 6 cut(s) 105, 1408, 1424, 2080, 2436, 2455
ClaI ATCGAT 1 cut(s) 2694
CseI GACGC 1 cut(s) 361
CspCI CAANNNNNGTGG 6 cut(s) 274, 309, 1688, 1723, 2225, 2260
DdeI CTNAG 9 cut(s) 456, 779, 1036, 1491, 1631, 1850, 2102, 2451, 2461
DpnI GATC 6 cut(s) 870, 879, 978, 1594, 2689, 2700
DpnII GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
DraI TTTAAA 1 cut(s) 2662
DraIII CACNNNGTG 2 cut(s) 968, 1811
DriI GACNNNNNGTC 1 cut(s) 2566
EaeI YGGCCR 6 cut(s) 814, 1152, 1388, 2266, 2297, 2386
Eam1104I CTCTTC 8 cut(s) 50, 780, 824, 1391, 2223, 2460, 2583, 2622
Eam1105I GACNNNNNGTC 1 cut(s) 2566
EarI CTCTTC 8 cut(s) 50, 780, 824, 1391, 2223, 2460, 2583, 2622
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 2 cut(s) 793, 2233
Eco105I TACGTA 1 cut(s) 2185
Eco130I CCWWGG 4 cut(s) 67, 382, 817, 2291
Eco24I GRGCYC 3 cut(s) 795, 2235, 2634
Eco31I GGTCTC 2 cut(s) 1358, 2147
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 4 cut(s) 1408, 2080, 2436, 2455
Eco47III AGCGCT 1 cut(s) 454
Eco53kI GAGCTC 2 cut(s) 793, 2233
Eco57I CTGAAG 2 cut(s) 324, 2646
Eco81I CCTNAGG 1 cut(s) 2102
Eco91I GGTNACC 2 cut(s) 2363, 2785
EcoICRI GAGCTC 2 cut(s) 793, 2233
EcoO109I RGGNCCY 3 cut(s) 105, 2080, 2455
EcoO65I GGTNACC 2 cut(s) 2363, 2785
EcoRI GAATTC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 1229, 2779
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 4 cut(s) 67, 382, 817, 2291
EcoT38I GRGCYC 3 cut(s) 795, 2235, 2634
ErhI CCWWGG 4 cut(s) 67, 382, 817, 2291
FalI AAGNNNNNCTT 6 cut(s) 707, 739, 728, 760, 1209, 1241
FaqI GGGAC 2 cut(s) 1313, 1334
FauI CCCGC 4 cut(s) 490, 758, 939, 1434
Fnu4HI GCNGC 3 cut(s) 1049, 2373, 2646
FokI GGATG 7 cut(s) 450, 921, 1733, 1869, 2168, 2195, 2597
FriOI GRGCYC 3 cut(s) 795, 2235, 2634
Fsp4HI GCNGC 3 cut(s) 1049, 2373, 2646
FspBI CTAG 3 cut(s) 219, 1020, 1235
GlaI GCGC 2 cut(s) 454, 2679
GluI GCNGC 3 cut(s) 1049, 2373, 2646
GsaI CCCAGC 3 cut(s) 1415, 2048, 2742
GsuI CTGGAG 3 cut(s) 1127, 1275, 1753
HaeII RGCGCY 2 cut(s) 456, 2681
HapII CCGG 7 cut(s) 78, 474, 1703, 1974, 2315, 2582, 2790
HgaI GACGC 1 cut(s) 361
HhaI GCGC 2 cut(s) 455, 2680
Hin6I GCGC 2 cut(s) 453, 2678
HinP1I GCGC 2 cut(s) 453, 2678
HincII GTYRAC 2 cut(s) 1240, 2380
HindII GTYRAC 2 cut(s) 1240, 2380
HpaII CCGG 7 cut(s) 78, 474, 1703, 1974, 2315, 2582, 2790
HphI GGTGA 8 cut(s) 11, 304, 542, 887, 1390, 1435, 2357, 2571
Hpy166II GTNNAC 8 cut(s) 19, 862, 1240, 1403, 2188, 2247, 2380, 2504
Hpy188I TCNGA 6 cut(s) 365, 988, 1039, 1502, 1895, 2464
Hpy8I GTNNAC 8 cut(s) 19, 862, 1240, 1403, 2188, 2247, 2380, 2504
Hpy99I CGWCG 1 cut(s) 644
HpyCH4III ACNGT 7 cut(s) 176, 349, 361, 1811, 2263, 2428, 2658
HpyCH4IV ACGT 7 cut(s) 943, 1014, 1070, 1242, 1263, 1270, 2184
HpyF10VI GCNNNNNNNGC 7 cut(s) 503, 1231, 1657, 1735, 2045, 2296, 2755
HpyF3I CTNAG 9 cut(s) 456, 779, 1036, 1491, 1631, 1850, 2102, 2451, 2461
HpySE526I ACGT 7 cut(s) 943, 1014, 1070, 1242, 1263, 1270, 2184
HspAI GCGC 2 cut(s) 453, 2678
Kpn2I TCCGGA 1 cut(s) 2314
KpnI GGTACC 2 cut(s) 1100, 1581
Kzo9I GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
LguI GCTCTTC 3 cut(s) 824, 2223, 2622
LmnI GCTCC 7 cut(s) 442, 790, 996, 2095, 2238, 2611, 2735
Lsp1109I GCAGC 2 cut(s) 1060, 2384
LweI GCATC 7 cut(s) 943, 1074, 1377, 1959, 2146, 2340, 2366
MaeI CTAG 3 cut(s) 219, 1020, 1235
MaeII ACGT 7 cut(s) 943, 1014, 1070, 1242, 1263, 1270, 2184
MaeIII GTNAC 9 cut(s) 295, 310, 349, 968, 1378, 1878, 2173, 2363, 2785
MalI GATC 6 cut(s) 870, 879, 978, 1594, 2689, 2700
MbiI CCGCTC 1 cut(s) 826
MboI GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
MfeI CAATTG 1 cut(s) 2112
MflI RGATCY 2 cut(s) 976, 2687
MhlI GDGCHC 6 cut(s) 609, 795, 2235, 2448, 2506, 2634
MlsI TGGCCA 5 cut(s) 816, 1390, 2268, 2299, 2388
MluNI TGGCCA 5 cut(s) 816, 1390, 2268, 2299, 2388
MlyI GAGTC 5 cut(s) 523, 891, 1154, 1336, 2198
MmeI TCCRAC 3 cut(s) 343, 966, 1723
Mox20I TGGCCA 5 cut(s) 816, 1390, 2268, 2299, 2388
MroI TCCGGA 1 cut(s) 2314
MroXI GAANNNNTTC 1 cut(s) 2480
MscI TGGCCA 5 cut(s) 816, 1390, 2268, 2299, 2388
MseI TTAA 5 cut(s) 333, 893, 1911, 2163, 2661
MslI CAYNNNNRTG 3 cut(s) 72, 293, 2342
Msp20I TGGCCA 5 cut(s) 816, 1390, 2268, 2299, 2388
MspA1I CMGCKG 1 cut(s) 2375
MspI CCGG 7 cut(s) 78, 474, 1703, 1974, 2315, 2582, 2790
MspR9I CCNGG 3 cut(s) 1231, 1974, 2781
MunI CAATTG 1 cut(s) 2112
MvaI CCWGG 2 cut(s) 1231, 2781
MwoI GCNNNNNNNGC 7 cut(s) 503, 1231, 1657, 1735, 2045, 2296, 2755
NciI CCSGG 1 cut(s) 1974
NcoI CCATGG 2 cut(s) 67, 2291
NdeII GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
NlaIV GGNNCC 5 cut(s) 1098, 1410, 1579, 2082, 2457
NmuCI GTSAC 7 cut(s) 295, 310, 349, 968, 1378, 2173, 2363
NspV TTCGAA 1 cut(s) 1801
OliI CACNNNNGTG 1 cut(s) 293
PagI TCATGA 1 cut(s) 1531
PciSI GCTCTTC 3 cut(s) 824, 2223, 2622
PcsI WCGNNNNNNNCGW 1 cut(s) 1953
PdmI GAANNNNTTC 1 cut(s) 2480
PfeI GAWTC 9 cut(s) 7, 238, 688, 1180, 1433, 1766, 1928, 2544, 2572
PflMI CCANNNNNTGG 1 cut(s) 914
PfoI TCCNGGA 1 cut(s) 1972
PkrI GCNGC 3 cut(s) 1050, 2374, 2647
PleI GAGTC 5 cut(s) 522, 891, 1154, 1336, 2198
PpsI GAGTC 5 cut(s) 522, 891, 1154, 1336, 2198
Ppu21I YACGTR 1 cut(s) 2185
PpuMI RGGWCCY 2 cut(s) 2080, 2455
PshBI ATTAAT 1 cut(s) 1911
PsiI TTATAA 1 cut(s) 2639
Psp124BI GAGCTC 2 cut(s) 795, 2235
Psp1406I AACGTT 1 cut(s) 1242
Psp5II RGGWCCY 2 cut(s) 2080, 2455
Psp6I CCWGG 2 cut(s) 1229, 2779
PspEI GGTNACC 2 cut(s) 2363, 2785
PspFI CCCAGC 3 cut(s) 1411, 2044, 2738
PspGI CCWGG 2 cut(s) 1229, 2779
PspN4I GGNNCC 5 cut(s) 1098, 1410, 1579, 2082, 2457
PspPI GGNCC 6 cut(s) 105, 1408, 1424, 2080, 2436, 2455
PspPPI RGGWCCY 2 cut(s) 2080, 2455
PsuI RGATCY 2 cut(s) 976, 2687
PvuII CAGCTG 1 cut(s) 2375
RseI CAYNNNNRTG 3 cut(s) 72, 293, 2342
SacI GAGCTC 2 cut(s) 795, 2235
SapI GCTCTTC 3 cut(s) 824, 2223, 2622
SaqAI TTAA 5 cut(s) 333, 893, 1911, 2163, 2661
SatI GCNGC 3 cut(s) 1049, 2373, 2646
Sau3AI GATC 6 cut(s) 868, 877, 976, 1592, 2687, 2698
Sau96I GGNCC 6 cut(s) 105, 1408, 1424, 2080, 2436, 2455
ScaI AGTACT 3 cut(s) 912, 1145, 1982
SchI GAGTC 5 cut(s) 523, 891, 1154, 1336, 2198
ScrFI CCNGG 3 cut(s) 1231, 1974, 2781
SduI GDGCHC 6 cut(s) 609, 795, 2235, 2448, 2506, 2634
SfaNI GCATC 7 cut(s) 943, 1074, 1377, 1959, 2146, 2340, 2366
SfcI CTRYAG 1 cut(s) 1870
SfuI TTCGAA 1 cut(s) 1801
SinI GGWCC 4 cut(s) 1408, 2080, 2436, 2455
SmiMI CAYNNNNRTG 3 cut(s) 72, 293, 2342
SmlI CTYRAG 2 cut(s) 626, 1988
SmoI CTYRAG 2 cut(s) 626, 1988
SnaBI TACGTA 1 cut(s) 2185
SsiI CCGC 8 cut(s) 33, 497, 765, 826, 932, 1427, 2023, 2645
SspMI CTAG 3 cut(s) 219, 1020, 1235
SstI GAGCTC 2 cut(s) 795, 2235
StyD4I CCNGG 3 cut(s) 1229, 1972, 2779
StyI CCWWGG 4 cut(s) 67, 382, 817, 2291
TaaI ACNGT 7 cut(s) 176, 349, 361, 1811, 2263, 2428, 2658
TaiI ACGT 7 cut(s) 946, 1017, 1073, 1245, 1266, 1273, 2187
TaqI TCGA 9 cut(s) 642, 1572, 1595, 1801, 1843, 1956, 2570, 2694, 2701
TaqII GACCGA 1 cut(s) 413
TatI WGTACW 5 cut(s) 910, 1074, 1143, 1980, 2592
TauI GCSGC 1 cut(s) 2648
TfiI GAWTC 9 cut(s) 7, 238, 688, 1180, 1433, 1766, 1928, 2544, 2572
Tru1I TTAA 5 cut(s) 333, 893, 1911, 2163, 2661
Tru9I TTAA 5 cut(s) 333, 893, 1911, 2163, 2661
TscAI CASTG 5 cut(s) 79, 1644, 1814, 2182, 2455
TseFI GTSAC 7 cut(s) 295, 310, 349, 968, 1378, 2173, 2363
TseI GCWGC 2 cut(s) 1048, 2372
Tsp45I GTSAC 7 cut(s) 295, 310, 349, 968, 1378, 2173, 2363
TspDTI ATGAA 9 cut(s) 313, 452, 656, 1041, 1307, 1464, 2241, 2473, 2601
TspGWI ACGGA 4 cut(s) 969, 1397, 1686, 1733
TspRI CASTG 5 cut(s) 79, 1644, 1814, 2182, 2455
Van91I CCANNNNNTGG 1 cut(s) 914
VneI GTGCAC 1 cut(s) 2502
VpaK11BI GGWCC 4 cut(s) 1408, 2080, 2436, 2455
VspI ATTAAT 1 cut(s) 1911
XapI RAATTY 4 cut(s) 889, 926, 1304, 2479
XcmI CCANNNNNNNNNTGG 1 cut(s) 2396
XmnI GAANNNNTTC 1 cut(s) 2480
XspI CTAG 3 cut(s) 219, 1020, 1235
ZrmI AGTACT 3 cut(s) 912, 1145, 1982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.