Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

576218 .. 581889

Gene Structure 5672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGTTGAAACCCAGACTACTTCACCCATCAGAGTCTCTGTTTCTCCACCCCAAGCCGTTCCTCCATGGAAGCAGTGGCCGCAGCAGTACTGCTTCACTTCCTGTCTGGTCAACAAAGCCCTCATTCCCCAATAAACACAAAAGCCTTCGATTCGGCTCAACTAATTATAGATACGAAACAAAAGCCGTAAGCAGTGATAGTACTAGTACTAGTAGCAGCAGCGATAGTACCAGTGCTATTAGCAACAGTGATGGTACTAGTAGCAGCGTCAGCAGTACTAGTACTAGCAGCAGCAGCACTAGTAATACTAGCACTGCTGGACCGACGACGACAACAACGATAACCACTACCACTGAGGTGACGGAAGTAGTGACGGAAACTGAAGATGCAGTGGTGGACAAAGAAGTAGAAGTAGTGACCACAAAAGAAGTGGTGACGGAGAAGTTCACGAGTGTTAAAGCAACCATAACGGTGACGCTTACTGTTGGAGGGTTTCTGAACAACTTAGGCCTAACCCGAGGAATCGATGATGTCAGAGATATGCTTGGTCAAACTCTCTTCATGGATCTTATTAGTGCTCACGTTGATCCCAAAACTGGATCAGAGAAGGAGCATGTTACCGGGTTCGCACACAGGAGTAGCCAGAAGGACAGCGAGATTGTATACGAGGCAGATTTTAAAGTTCCATTAGATTTTGGAGAAGTGGGCGCCGTTTTAATAGAGAATGAGCACCACAAGGAGATGTATCTCAAGGATATTGTGCTGGATGGCTTGCCTAATGGTCCTGTACTACTTACCTGTAATTCATGGCTCCATTCCAAGTATGACAATCCTGCGAAGAGAGTCTTCTTCACAAACAAGTCATATTTGCCATCTCAAACACCAAGTGCTTTGGTGCGGCTAAGAGAAGAGGAGCTTGTTACTTTGCGTGGCAATGGCCAAGGAGAACGCAAGAGCTTTGAGAGAGTATACGACTATGATGTCTACAATGATCTTGGGGATCCTGATTCAAAATTAAGCTTAAAAAGAACTGTAATTGGGGGCAGCAAAGAGTTCCCCTTTCCCAGGCGATGCCGAACTGGGCGACCAATGTGTGAAGCAGATCCGCTTTCGGAGAAAAGAAGTAGTAGTACATATGTTCCCAGAGATGAAGCATTTTCAGAGATAAAACAAATAACTTTCTCAGCAAAGACAGTATATTCTGTCTTGCACGCAGTGGTACCTGCCTTGGAGACTGCCATGGTCGACTCTGATCTCGGATTCCCACTGTTCACATCTATAGACTCACTCTACAATGAAGGCATTAGCTTGCCTCCCCTTAAAGATCAAGGGGTTCTCAGAACCATGGTTCCCAGGCTAGTCAATGCTATAGCTTCCGGAGAAGATGTTCTACGGTTTGTGCCCCCAGAAACAATGAATAGAGACAAATTCTTTTGGTTTAGGGATGAGGAATTTGCTAGGCAGACTCTTGCGGGTCTTAACCCATATAGCATCAAGTTGGTGACGGAATGGCCATTGAGGAGTGAATTGGACCCTGACGTATATGGTCCTCCAGAATCTGCAATCACCACGAAAATGATTGAGCAAGAGATCAGAGGCTTTGCGACCATCAAAGAGGCCATAAGAGAAAAGAAGTTGTTTATACTAGATTACCATGATTTGTTCTTACCGTACGTGGGCAAAGTAAGAGAGATCGAAGGTACAACTCTGTATGGATCTAGGACATTGTTTTTCCTCACCCCAGAAGGCACATTGAGGCCGCTGGTTATTGAATTGACTCGACCGCCACTGGATGGAAAGCCTCAGTGGAAGCAAACTTTCCAACCCAGCTGGAATGCCACCGGTGTCTGGCTTTGGAGGATCGCCAAAGCTCATGTCCTTGCTCACGACTCCGGTTACCATCAACTTGTTACTCACTGGCTAAGAACACATTGTGCCACAGAGCCATATATAATCGCAACAAATCGGCAACTGAGTGTGATGCACCCAATCTATCGATTGTTGCATCCCCATTTCAGATACACGATGGAGATTAATGCTCTTGCTCGCGAATCACTAGTCAATGCCGGTGGCATCATTGAAACCTCATTCTCGCCGGGAAAATATTCCAATGAGATTTGCTCTATTGCCTATGGTAAGGAGTGGCGATTCGACCTAGAAGCACTGCCCGCTGACCTTATTCGCAGGGGCATGGCCATTAAGGACCCAACTGCTCCACATGGTCTGAGGTTATCAATTCAAGACTACCCTTTTGCTAATGACGGGCTCCTTCTCTGGGATGCCCTCAAACAATGGGTCACTGATTATGTAAGCCACTATTACAAAGATTCCACCCTTGTACAAACTGATCAAGAGCTCCAAGCATGGTGGACAGAGATCAGAACAGTAGGGCACGGAGACAAAAAGGATGAACCCTGGTGGCCTGAGCTAAATACCCCTCAAGATCTCATCGACATTATCACAACAATAGTTTGGGTCACATCCGGCCACCACGCAGCAGTCAACTTTGGTCAATACACCTATGCAGGCTACTTCCCTAACCACCCAACAATTGCAAGGACCAACGTTCCCACGGAGGACCCCGACGACGAGGTCTGGAAGAAGTTCTTGGAAAAACCCGAAAGCGCACTTTTGCAGTGCTTTCCTTCGCAAATTCAAGCAACAAGGATCATGGCGGTTTTGGACATTTTGTCTAATCATTCGCCTGATGAAGAGTACATGGTAGAGAAGATGGAGGACGCATGGGCTGAAGACGAAGTCATAAGAGCGGCGTACGAGCGTTTTAAAGGGAGGTTGATGATGCTTGAAGGAACTATTGATGATAGAAATGCTAATTATGAGTTGAAGAATCGAAGTGGTGCTGGGGTTGTGCCTTACGAGCTTCTAAAGCCCTTCTCAGAACCTGGGGTTACAGGAAAGGGAGTCCCATATAGCATCTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010597 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

981

Amino Acids

110.33

Weight (kDa)

5.57

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	206 - 284	3e-09	PLAT/LH2 domain
Lipoxygenase	PF00305	298 - 964	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	980, 2591
Acc36I	ACCTGC	1 cut(s)	1231
Acc65I	GGTACC	1 cut(s)	1219
AccB1I	GGYRCC	2 cut(s)	707, 1219
AccB7I	CCANNNNNTGG	1 cut(s)	1793
AccBSI	CCGCTC	1 cut(s)	2768
AccI	GTMKAC	4 cut(s)	663, 969, 984, 1245
AccII	CGCG	1 cut(s)	2049
AccIII	TCCGGA	1 cut(s)	1376
AciI	CCGC	9 cut(s)	79, 898, 1106, 1472, 1760, 1784, 2169, 2675, 2768
AclI	AACGTT	1 cut(s)	2565
AclWI	GGATC	9 cut(s)	573, 581, 607, 995, 1008, 1097, 1723, 1868, 2675
AcoI	YGGCCR	5 cut(s)	76, 937, 1511, 2193, 2485
AcsI	RAATTY	3 cut(s)	1427, 1451, 2652
AcuI	CTGAAG	2 cut(s)	402, 2769
AcyI	GRCGYC	1 cut(s)	708
AdeI	CACNNNGTG	3 cut(s)	887, 1216, 1934
AfiI	CCNNNNNNNGG	6 cut(s)	596, 1065, 1676, 1793, 1848, 2275
AgeI	ACCGGT	1 cut(s)	1841
AgsI	TTSAA	8 cut(s)	7, 1011, 1772, 2081, 2240, 2657, 2807, 2845
AhdI	GACNNNNNGTC	1 cut(s)	2689
AhlI	ACTAGT	6 cut(s)	203, 209, 257, 278, 299, 2056
AjnI	CCWGG	4 cut(s)	1064, 1352, 2414, 2902
AjuI	GAANNNNNNNTTGG	2 cut(s)	2591, 2623
AleI	CACNNNNGTG	1 cut(s)	356
AloI	GAACNNNNNNTCC	4 cut(s)	1333, 1365, 1371, 1403
Alw21I	GWGCWC	3 cut(s)	580, 732, 2358
Alw26I	GTCTC	4 cut(s)	39, 1226, 1416, 2391
AlwI	GGATC	9 cut(s)	573, 581, 607, 995, 1008, 1097, 1723, 1868, 2675
AlwNI	CAGNNNCTG	2 cut(s)	1559, 2903
Ama87I	CYCGRG	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	1376
AoxI	GGCC	9 cut(s)	76, 508, 937, 1511, 1617, 1757, 2193, 2420, 2485
ApeKI	GCWGC	9 cut(s)	81, 216, 219, 264, 288, 291, 294, 1044, 2495
ApoI	RAATTY	3 cut(s)	1427, 1451, 2652
ArsI	GACNNNNNNTTYG	8 cut(s)	1860, 1892, 2043, 2075, 2234, 2266, 2280, 2312
AseI	ATTAAT	1 cut(s)	2034
AsiGI	ACCGGT	1 cut(s)	1841
Asp700I	GAANNNNTTC	3 cut(s)	1386, 2104, 2603
Asp718I	GGTACC	1 cut(s)	1219
AspLEI	GCGC	2 cut(s)	710, 2627
AspS9I	GGNCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
AsuC2I	CCSGG	2 cut(s)	622, 2097
AsuHPI	GGTGA	7 cut(s)	14, 370, 445, 484, 1513, 1558, 1729
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
BaeGI	GKGCMC	2 cut(s)	1404, 2394
BalI	TGGCCA	3 cut(s)	939, 1513, 2195
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	2 cut(s)	707, 1219
BanII	GRGCYC	2 cut(s)	2268, 2358
BarI	GAAGNNNNNNTAC	4 cut(s)	1114, 1146, 1374, 1406
BauI	CACGAG	1 cut(s)	448
BbsI	GAAGAC	2 cut(s)	838, 2757
Bbv12I	GWGCWC	3 cut(s)	580, 732, 2358
BbvI	GCAGC	9 cut(s)	93, 228, 231, 276, 300, 303, 306, 1056, 2507
BccI	CCATC	9 cut(s)	34, 245, 761, 880, 1616, 1787, 1908, 2020, 2725
BceAI	ACGGC	3 cut(s)	40, 170, 695
BciT130I	CCWGG	4 cut(s)	1066, 1354, 2416, 2904
BclI	TGATCA	1 cut(s)	2347
BcnI	CCSGG	2 cut(s)	622, 2097
BcoDI	GTCTC	4 cut(s)	39, 1226, 1416, 2391
BcuI	ACTAGT	6 cut(s)	203, 209, 257, 278, 299, 2056
BfmI	CTRYAG	2 cut(s)	1278, 1368
BfoI	RGCGCY	1 cut(s)	711
BfuAI	ACCTGC	1 cut(s)	1231
BglII	AGATCT	1 cut(s)	2443
BmcAI	AGTACT	5 cut(s)	88, 202, 208, 277, 283
Bme1390I	CCNGG	6 cut(s)	622, 1066, 1354, 2097, 2416, 2904
Bme18I	GGWCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
BmeRI	GACNNNNNGTC	1 cut(s)	2689
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
BmiI	GGNNCC	9 cut(s)	709, 812, 1002, 1221, 1350, 1533, 2205, 2267, 2580
BmrFI	CCNGG	6 cut(s)	622, 1066, 1354, 2097, 2416, 2904
BmrI	ACTGGG	1 cut(s)	1089
BmsI	GCATC	8 cut(s)	376, 1061, 1500, 1971, 2014, 2082, 2269, 2790
BmuI	ACTGGG	1 cut(s)	1089
BpiI	GAAGAC	2 cut(s)	838, 2757
BplI	GAGNNNNNCTC	2 cut(s)	2105, 2137
BpmI	CTGGAG	1 cut(s)	1536
Bpu10I	CCTNAGC	1 cut(s)	2424
BpuEI	CTTGAG	2 cut(s)	734, 2424
BpuMI	CCSGG	2 cut(s)	622, 2097
Bsa29I	ATCGAT	2 cut(s)	525, 1996
BsaAI	YACGTR	1 cut(s)	1675
BsaHI	GRCGYC	1 cut(s)	708
BsaWI	WCCGGW	3 cut(s)	1376, 1841, 1892
BsaXI	ACNNNNNCTCC	2 cut(s)	1371, 1401
Bsc4I	CCNNNNNNNGG	6 cut(s)	596, 1065, 1676, 1793, 1848, 2275
Bse118I	RCCGGY	2 cut(s)	1841, 2066
Bse1I	ACTGG	5 cut(s)	231, 601, 1084, 1794, 1922
Bse3DI	GCAATG	1 cut(s)	940
BseAI	TCCGGA	1 cut(s)	1376
BseBI	CCWGG	4 cut(s)	1066, 1354, 2416, 2904
BseCI	ATCGAT	2 cut(s)	525, 1996
BseGI	GGATG	7 cut(s)	772, 1450, 1798, 2005, 2284, 2413, 2480
BseLI	CCNNNNNNNGG	6 cut(s)	596, 1065, 1676, 1793, 1848, 2275
BseMI	GCAATG	1 cut(s)	940
BseMII	CTCAG	8 cut(s)	345, 1197, 1351, 1817, 1964, 2216, 2415, 2910
BseNI	ACTGG	5 cut(s)	231, 601, 1084, 1794, 1922
BseRI	GAGGAG	2 cut(s)	926, 1534
BseSI	GKGCMC	2 cut(s)	1404, 2394
BseXI	GCAGC	9 cut(s)	93, 228, 231, 276, 300, 303, 306, 1056, 2507
BseYI	CCCAGC	2 cut(s)	1826, 2861
Bsh1236I	CGCG	1 cut(s)	2049
Bsh1285I	CGRYCG	1 cut(s)	1784
BshFI	GGCC	9 cut(s)	78, 510, 939, 1513, 1619, 1759, 2195, 2422, 2487
BshNI	GGYRCC	2 cut(s)	707, 1219
BshTI	ACCGGT	1 cut(s)	1841
BshVI	ATCGAT	2 cut(s)	525, 1996
BsiEI	CGRYCG	1 cut(s)	1784
BsiHKAI	GWGCWC	3 cut(s)	580, 732, 2358
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	7 cut(s)	621, 1377, 1842, 1893, 2067, 2096, 2484
BsiWI	CGTACG	2 cut(s)	1671, 2772
BslFI	GGGAC	1 cut(s)	2909
BslI	CCNNNNNNNGG	6 cut(s)	596, 1065, 1676, 1793, 1848, 2275
BsmAI	GTCTC	4 cut(s)	39, 1226, 1416, 2391
BsmFI	GGGAC	1 cut(s)	2909
BsmI	GAATGC	1 cut(s)	1840
BsnI	GGCC	9 cut(s)	78, 510, 939, 1513, 1619, 1759, 2195, 2422, 2487
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	6 cut(s)	580, 732, 1404, 2268, 2358, 2394
Bsp13I	TCCGGA	1 cut(s)	1376
Bsp1407I	TGTACA	1 cut(s)	2338
Bsp19I	CCATGG	3 cut(s)	64, 1239, 1344
Bsp68I	TCGCGA	1 cut(s)	2049
BspACI	CCGC	9 cut(s)	79, 898, 1106, 1472, 1760, 1784, 2169, 2675, 2768
BspANI	GGCC	9 cut(s)	78, 510, 939, 1513, 1619, 1759, 2195, 2422, 2487
BspCNI	CTCAG	8 cut(s)	346, 1196, 1350, 1816, 1965, 2217, 2416, 2909
BspDI	ATCGAT	2 cut(s)	525, 1996
BspEI	TCCGGA	1 cut(s)	1376
BspFNI	CGCG	1 cut(s)	2049
BspLI	GGNNCC	9 cut(s)	709, 812, 1002, 1221, 1350, 1533, 2205, 2267, 2580
BspMI	ACCTGC	1 cut(s)	1231
BspPI	GGATC	9 cut(s)	573, 581, 607, 995, 1008, 1097, 1723, 1868, 2675
BspT107I	GGYRCC	2 cut(s)	707, 1219
BsrBI	CCGCTC	1 cut(s)	2768
BsrDI	GCAATG	1 cut(s)	940
BsrFI	RCCGGY	2 cut(s)	1841, 2066
BsrGI	TGTACA	1 cut(s)	2338
BsrI	ACTGG	5 cut(s)	231, 601, 1084, 1794, 1922
BssAI	RCCGGY	2 cut(s)	1841, 2066
BssNAI	GTATAC	2 cut(s)	664, 970
BssNI	GRCGYC	1 cut(s)	708
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	5 cut(s)	64, 940, 1227, 1239, 1344
Bst1107I	GTATAC	2 cut(s)	664, 970
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	4 cut(s)	1066, 1354, 2416, 2904
Bst4CI	ACNGT	9 cut(s)	248, 472, 484, 1033, 1195, 1269, 1395, 1671, 2386
Bst6I	CTCTTC	4 cut(s)	563, 833, 903, 2706
BstACI	GRCGYC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	2338
BstBAI	YACGTR	1 cut(s)	1675
BstC8I	GCNNGC	6 cut(s)	773, 1212, 1310, 2047, 2169, 2527
BstDSI	CCRYGG	4 cut(s)	64, 1239, 1344, 2571
BstEII	GGTNACC	1 cut(s)	1895
BstENI	CCTNNNNNAGG	1 cut(s)	1063
BstF5I	GGATG	7 cut(s)	772, 1450, 1798, 2005, 2284, 2413, 2480
BstFNI	CGCG	1 cut(s)	2049
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	2 cut(s)	710, 2627
BstMAI	GTCTC	4 cut(s)	39, 1226, 1416, 2391
BstMCI	CGRYCG	1 cut(s)	1784
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 270, 294, 2168, 2878, 2887
BstNI	CCWGG	4 cut(s)	1066, 1354, 2416, 2904
BstNSI	RCATGY	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	1895
BstSCI	CCNGG	6 cut(s)	620, 1064, 1352, 2095, 2414, 2902
BstSFI	CTRYAG	2 cut(s)	1278, 1368
BstSLI	GKGCMC	2 cut(s)	1404, 2394
BstUI	CGCG	1 cut(s)	2049
BstV1I	GCAGC	9 cut(s)	93, 228, 231, 276, 300, 303, 306, 1056, 2507
BstV2I	GAAGAC	2 cut(s)	838, 2757
BstX2I	RGATCY	5 cut(s)	565, 1000, 1102, 1715, 2443
BstYI	RGATCY	5 cut(s)	565, 1000, 1102, 1715, 2443
BstZ17I	GTATAC	2 cut(s)	664, 970
Bsu15I	ATCGAT	2 cut(s)	525, 1996
BsuRI	GGCC	9 cut(s)	78, 510, 939, 1513, 1619, 1759, 2195, 2422, 2487
BsuTUI	ATCGAT	2 cut(s)	525, 1996
BtgI	CCRYGG	4 cut(s)	64, 1239, 1344, 2571
BtgZI	GCGATG	1 cut(s)	1084
BtsCI	GGATG	7 cut(s)	772, 1450, 1798, 2005, 2284, 2413, 2480
BtsI	GCAGTG	7 cut(s)	79, 199, 312, 396, 1221, 2162, 2642
BtuMI	TCGCGA	1 cut(s)	2049
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	6 cut(s)	773, 1212, 1310, 2047, 2169, 2527
CaiI	CAGNNNCTG	2 cut(s)	1559, 2903
CfoI	GCGC	2 cut(s)	710, 2627
Cfr10I	RCCGGY	2 cut(s)	1841, 2066
Cfr13I	GGNCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
ClaI	ATCGAT	2 cut(s)	525, 1996
CseI	GACGC	3 cut(s)	256, 484, 2747
CspAI	ACCGGT	1 cut(s)	1841
CspCI	CAANNNNNGTGG	6 cut(s)	411, 446, 2050, 2085, 2348, 2383
DinI	GGCGCC	1 cut(s)	709
DraI	TTTAAA	2 cut(s)	679, 2785
DraIII	CACNNNGTG	3 cut(s)	887, 1216, 1934
DrdI	GACNNNNNNGTC	2 cut(s)	980, 2591
DriI	GACNNNNNGTC	1 cut(s)	2689
DseDI	GACNNNNNNGTC	2 cut(s)	980, 2591
EaeI	YGGCCR	5 cut(s)	76, 937, 1511, 2193, 2485
Eam1104I	CTCTTC	4 cut(s)	563, 833, 903, 2706
Eam1105I	GACNNNNNGTC	1 cut(s)	2689
EarI	CTCTTC	4 cut(s)	563, 833, 903, 2706
Ecl136II	GAGCTC	1 cut(s)	2356
Eco130I	CCWWGG	5 cut(s)	64, 940, 1227, 1239, 1344
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	2 cut(s)	2268, 2358
Eco47I	GGWCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
Eco53kI	GAGCTC	1 cut(s)	2356
Eco57I	CTGAAG	2 cut(s)	402, 2769
Eco88I	CYCGRG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	1895
EcoICRI	GAGCTC	1 cut(s)	2356
EcoNI	CCTNNNNNAGG	1 cut(s)	1063
EcoO109I	RGGNCCY	2 cut(s)	2203, 2578
EcoO65I	GGTNACC	1 cut(s)	1895
EcoRII	CCWGG	4 cut(s)	1064, 1352, 2414, 2902
EcoT14I	CCWWGG	5 cut(s)	64, 940, 1227, 1239, 1344
EcoT38I	GRGCYC	2 cut(s)	2268, 2358
EgeI	GGCGCC	1 cut(s)	709
EheI	GGCGCC	1 cut(s)	709
ErhI	CCWWGG	5 cut(s)	64, 940, 1227, 1239, 1344
FalI	AAGNNNNNCTT	6 cut(s)	830, 862, 900, 932, 2591, 2623
FaqI	GGGAC	1 cut(s)	2909
FauI	CCCGC	2 cut(s)	1465, 2176
FauNDI	CATATG	1 cut(s)	1135
FbaI	TGATCA	1 cut(s)	2347
FblI	GTMKAC	4 cut(s)	663, 969, 984, 1245
FokI	GGATG	7 cut(s)	779, 1457, 1805, 1992, 2291, 2420, 2467
FriOI	GRGCYC	2 cut(s)	2268, 2358
GlaI	GCGC	2 cut(s)	709, 2626
GsaI	CCCAGC	2 cut(s)	1830, 2865
GsuI	CTGGAG	1 cut(s)	1536
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	9 cut(s)	78, 510, 939, 1513, 1619, 1759, 2195, 2422, 2487
HapII	CCGG	7 cut(s)	621, 1377, 1842, 1893, 2067, 2096, 2484
HgaI	GACGC	3 cut(s)	256, 484, 2747
HhaI	GCGC	2 cut(s)	710, 2627
Hin1I	GRCGYC	1 cut(s)	708
Hin6I	GCGC	2 cut(s)	708, 2625
HinP1I	GCGC	2 cut(s)	708, 2625
HincII	GTYRAC	3 cut(s)	111, 1246, 2503
HindII	GTYRAC	3 cut(s)	111, 1246, 2503
HindIII	AAGCTT	1 cut(s)	1018
HpaII	CCGG	7 cut(s)	621, 1377, 1842, 1893, 2067, 2096, 2484
HphI	GGTGA	7 cut(s)	14, 370, 445, 484, 1513, 1558, 1729
Hpy99I	CGWCG	4 cut(s)	328, 331, 2588, 2591
HpyCH4III	ACNGT	9 cut(s)	248, 472, 484, 1033, 1195, 1269, 1395, 1671, 2386
HpyCH4IV	ACGT	4 cut(s)	582, 1539, 1674, 2565
HpyCH4V	TGCA	8 cut(s)	389, 1210, 1562, 1984, 2005, 2525, 2555, 2635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 270, 294, 2168, 2878, 2887
HpySE526I	ACGT	4 cut(s)	582, 1539, 1674, 2565
Hsp92I	GRCGYC	1 cut(s)	708
HspAI	GCGC	2 cut(s)	708, 2625
KasI	GGCGCC	1 cut(s)	707
Kpn2I	TCCGGA	1 cut(s)	1376
KpnI	GGTACC	1 cut(s)	1223
Ksp22I	TGATCA	1 cut(s)	2347
LmnI	GCTCC	6 cut(s)	610, 816, 913, 2218, 2271, 2361
Lsp1109I	GCAGC	9 cut(s)	93, 228, 231, 276, 300, 303, 306, 1056, 2507
LweI	GCATC	8 cut(s)	376, 1061, 1500, 1971, 2014, 2082, 2269, 2790
MaeII	ACGT	4 cut(s)	582, 1539, 1674, 2565
MbiI	CCGCTC	1 cut(s)	2768
MfeI	CAATTG	1 cut(s)	2550
MflI	RGATCY	5 cut(s)	565, 1000, 1102, 1715, 2443
MhlI	GDGCHC	6 cut(s)	580, 732, 1404, 2268, 2358, 2394
MlsI	TGGCCA	3 cut(s)	939, 1513, 2195
MluNI	TGGCCA	3 cut(s)	939, 1513, 2195
Mly113I	GGCGCC	1 cut(s)	708
MlyI	GAGTC	8 cut(s)	41, 852, 1241, 1277, 1459, 1771, 1883, 2931
MmeI	TCCRAC	2 cut(s)	466, 1846
Mox20I	TGGCCA	3 cut(s)	939, 1513, 2195
MroI	TCCGGA	1 cut(s)	1376
MroXI	GAANNNNTTC	3 cut(s)	1386, 2104, 2603
MscI	TGGCCA	3 cut(s)	939, 1513, 2195
MslI	CAYNNNNRTG	3 cut(s)	356, 470, 1574
Msp20I	TGGCCA	3 cut(s)	939, 1513, 2195
MspA1I	CMGCKG	3 cut(s)	1762, 1830, 2171
MspI	CCGG	7 cut(s)	621, 1377, 1842, 1893, 2067, 2096, 2484
MspR9I	CCNGG	6 cut(s)	622, 1066, 1354, 2097, 2416, 2904
MunI	CAATTG	1 cut(s)	2550
Mva1269I	GAATGC	1 cut(s)	1840
MvaI	CCWGG	4 cut(s)	1066, 1354, 2416, 2904
MvnI	CGCG	1 cut(s)	2049
MwoI	GCNNNNNNNGC	6 cut(s)	78, 270, 294, 2168, 2878, 2887
NarI	GGCGCC	1 cut(s)	708
NciI	CCSGG	2 cut(s)	622, 2097
NcoI	CCATGG	3 cut(s)	64, 1239, 1344
NdeI	CATATG	1 cut(s)	1135
NlaIV	GGNNCC	9 cut(s)	709, 812, 1002, 1221, 1350, 1533, 2205, 2267, 2580
NmuCI	GTSAC	8 cut(s)	358, 370, 415, 433, 472, 1501, 2296, 2476
NruI	TCGCGA	1 cut(s)	2049
NspI	RCATGY	1 cut(s)	617
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PctI	GAATGC	1 cut(s)	1840
PdmI	GAANNNNTTC	3 cut(s)	1386, 2104, 2603
PfeI	GAWTC	9 cut(s)	150, 522, 1007, 1260, 1556, 2051, 2148, 2327, 2848
Pfl23II	CGTACG	2 cut(s)	1671, 2772
PflFI	GACNNNGTC	2 cut(s)	2591, 2756
PflMI	CCANNNNNTGG	1 cut(s)	1793
PinAI	ACCGGT	1 cut(s)	1841
PleI	GAGTC	8 cut(s)	40, 851, 1241, 1277, 1459, 1771, 1883, 2930
PluTI	GGCGCC	1 cut(s)	711
PpsI	GAGTC	8 cut(s)	40, 851, 1241, 1277, 1459, 1771, 1883, 2930
Ppu21I	YACGTR	1 cut(s)	1675
PpuMI	RGGWCCY	2 cut(s)	2203, 2578
PshBI	ATTAAT	1 cut(s)	2034
Psp124BI	GAGCTC	1 cut(s)	2358
Psp1406I	AACGTT	1 cut(s)	2565
Psp5II	RGGWCCY	2 cut(s)	2203, 2578
Psp6I	CCWGG	4 cut(s)	1064, 1352, 2414, 2902
PspEI	GGTNACC	1 cut(s)	1895
PspFI	CCCAGC	2 cut(s)	1826, 2861
PspGI	CCWGG	4 cut(s)	1064, 1352, 2414, 2902
PspLI	CGTACG	2 cut(s)	1671, 2772
PspN4I	GGNNCC	9 cut(s)	709, 812, 1002, 1221, 1350, 1533, 2205, 2267, 2580
PspPI	GGNCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
PspPPI	RGGWCCY	2 cut(s)	2203, 2578
PstNI	CAGNNNCTG	2 cut(s)	1559, 2903
PsuI	RGATCY	5 cut(s)	565, 1000, 1102, 1715, 2443
PsyI	GACNNNGTC	2 cut(s)	2591, 2756
PvuII	CAGCTG	1 cut(s)	1830
RruI	TCGCGA	1 cut(s)	2049
RseI	CAYNNNNRTG	3 cut(s)	356, 470, 1574
SacI	GAGCTC	1 cut(s)	2358
SalI	GTCGAC	1 cut(s)	1244
Sau96I	GGNCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
ScaI	AGTACT	5 cut(s)	88, 202, 208, 277, 283
SchI	GAGTC	8 cut(s)	41, 852, 1241, 1277, 1459, 1771, 1883, 2931
ScrFI	CCNGG	6 cut(s)	622, 1066, 1354, 2097, 2416, 2904
SduI	GDGCHC	6 cut(s)	580, 732, 1404, 2268, 2358, 2394
SfaNI	GCATC	8 cut(s)	376, 1061, 1500, 1971, 2014, 2082, 2269, 2790
SfcI	CTRYAG	2 cut(s)	1278, 1368
SfoI	GGCGCC	1 cut(s)	709
SgrAI	CRCCGGYG	1 cut(s)	1841
SinI	GGWCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
SmiMI	CAYNNNNRTG	3 cut(s)	356, 470, 1574
SmlI	CTYRAG	2 cut(s)	749, 2439
SmoI	CTYRAG	2 cut(s)	749, 2439
SpeI	ACTAGT	6 cut(s)	203, 209, 257, 278, 299, 2056
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	9 cut(s)	79, 898, 1106, 1472, 1760, 1784, 2169, 2675, 2768
SspDI	GGCGCC	1 cut(s)	707
SspI	AATATT	1 cut(s)	2105
SstI	GAGCTC	1 cut(s)	2358
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	6 cut(s)	620, 1064, 1352, 2095, 2414, 2902
StyI	CCWWGG	5 cut(s)	64, 940, 1227, 1239, 1344
TaaI	ACNGT	9 cut(s)	248, 472, 484, 1033, 1195, 1269, 1395, 1671, 2386
TaiI	ACGT	4 cut(s)	585, 1542, 1677, 2568
TaqI	TCGA	9 cut(s)	148, 525, 1245, 1695, 1780, 1996, 2151, 2451, 2851
TaqII	GACCGA	1 cut(s)	337
TatI	WGTACW	9 cut(s)	86, 200, 206, 275, 281, 787, 1130, 2338, 2715
TauI	GCSGC	4 cut(s)	81, 901, 1762, 2771
TfiI	GAWTC	9 cut(s)	150, 522, 1007, 1260, 1556, 2051, 2148, 2327, 2848
TseFI	GTSAC	8 cut(s)	358, 370, 415, 433, 472, 1501, 2296, 2476
TseI	GCWGC	9 cut(s)	81, 216, 219, 264, 288, 291, 294, 1044, 2495
Tsp45I	GTSAC	8 cut(s)	358, 370, 415, 433, 472, 1501, 2296, 2476
TspDTI	ATGAA	7 cut(s)	550, 795, 1164, 1311, 1430, 2424, 2724
TspGWI	ACGGA	6 cut(s)	377, 389, 452, 1520, 2409, 2588
Tth111I	GACNNNGTC	2 cut(s)	2591, 2756
Van91I	CCANNNNNTGG	1 cut(s)	1793
VpaK11BI	GGWCC	7 cut(s)	320, 782, 1531, 1547, 2203, 2559, 2578
VspI	ATTAAT	1 cut(s)	2034
XagI	CCTNNNNNAGG	1 cut(s)	1063
XapI	RAATTY	3 cut(s)	1427, 1451, 2652
XceI	RCATGY	1 cut(s)	617
XcmI	CCANNNNNNNNNTGG	2 cut(s)	71, 427
XmiI	GTMKAC	4 cut(s)	663, 969, 984, 1245
XmnI	GAANNNNTTC	3 cut(s)	1386, 2104, 2603
ZrmI	AGTACT	5 cut(s)	88, 202, 208, 277, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.