Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8091784.1

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 593

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8091784.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 482 bp

gaagcactaatcaatgccggtggcatcattgaaacctcattctcgcccggaaaatattccaatgagatttgctctattgcctatggtaaggagtggcgattcgacctagaggcactgcccgctgaccttattcgcaggggcatggccgttaaggacccaactgctccacatggtctgaggctatcaattcaagactacccttttgctaatgacgggctccttctctgggatgccctcaaacaatgggtcactgattacgtaagccactactacaaagattccacccttgtacaaactgatcaagagctccaagcatggtggacagagatcagaacagtagggcatggagacaaaaaggatgaaccctggtggcctgagctaaatacccctcaagatctcatcgacattatcacaacaatggtttgggtcacatccggtcaccacgcagcagtcaactttggtcaatacacctatgcaggtta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010597 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

160

Amino Acids

18.17

Weight (kDa)

4.74

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AciI	CCGC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	144
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	32, 191
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	307, 379
AluI	AGCT	2 cut(s)	307, 379
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	342
AoxI	GGCC	2 cut(s)	144, 371
ApeKI	GCWGC	1 cut(s)	446
ArsI	GACNNNNNNTTYG	4 cut(s)	185, 217, 231, 263
Asp700I	GAANNNNTTC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	219, 309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	48, 367
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	156, 218
BmrFI	CCNGG	2 cut(s)	48, 367
BmsI	GCATC	2 cut(s)	33, 220
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	3 cut(s)	235, 364, 431
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	167, 366
BseXI	GCAGC	1 cut(s)	458
BshFI	GGCC	2 cut(s)	146, 373
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	3 cut(s)	18, 48, 435
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	146, 373
Bsp1286I	GDGCHC	2 cut(s)	219, 309
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	298, 327, 394
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	146, 373
BspCNI	CTCAG	2 cut(s)	168, 367
BspLI	GGNNCC	2 cut(s)	156, 218
BspMI	ACCTGC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	3 cut(s)	298, 327, 394
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	176, 375
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	235, 364, 431
BstKTI	GATC	3 cut(s)	301, 330, 397
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	3 cut(s)	298, 327, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	367
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	46, 365
BstSNI	TACGTA	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	146, 373
BtsCI	GGATG	3 cut(s)	235, 364, 431
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	113, 249
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	290
CspCI	CAANNNNNGTGG	3 cut(s)	36, 299, 334
CviAII	CATG	4 cut(s)	142, 170, 315, 344
CviJI	RGCY	7 cut(s)	146, 181, 217, 264, 307, 373, 379
CviKI_1	RGCY	7 cut(s)	146, 181, 217, 264, 307, 373, 379
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	2 cut(s)	176, 375
DpnI	GATC	3 cut(s)	300, 329, 396
DpnII	GATC	3 cut(s)	298, 327, 394
EaeI	YGGCCR	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	307
Eco105I	TACGTA	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	219, 309
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	307
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	365
EcoT38I	GRGCYC	2 cut(s)	219, 309
FaeI	CATG	4 cut(s)	145, 173, 318, 347
FaiI	YATR	6 cut(s)	84, 143, 171, 316, 345, 474
FatI	CATG	4 cut(s)	141, 169, 314, 343
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	3 cut(s)	242, 371, 418
FriOI	GRGCYC	2 cut(s)	219, 309
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	146, 373
HapII	CCGG	3 cut(s)	18, 48, 435
Hin1II	CATG	4 cut(s)	145, 173, 318, 347
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	99, 278
HpaII	CCGG	3 cut(s)	18, 48, 435
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	321, 454
Hpy188I	TCNGA	2 cut(s)	177, 332
Hpy188III	TCNNGA	3 cut(s)	191, 302, 392
Hpy8I	GTNNAC	2 cut(s)	321, 454
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	176, 375
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	145, 173, 318, 347
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	298, 327, 394
LmnI	GCTCC	3 cut(s)	169, 222, 312
LpnPI	CCDG	9 cut(s)	31, 61, 121, 211, 352, 379, 387, 448, 462
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	33, 220
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	247, 427, 437
MalI	GATC	3 cut(s)	300, 329, 396
MboI	GATC	3 cut(s)	298, 327, 394
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	219, 309
MluCI	AATT	1 cut(s)	186
MnlI	CCTC	5 cut(s)	46, 103, 171, 245, 399
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	3 cut(s)	18, 48, 435
MspR9I	CCNGG	2 cut(s)	48, 367
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	298, 327, 394
NlaIII	CATG	4 cut(s)	145, 173, 318, 347
NlaIV	GGNNCC	2 cut(s)	156, 218
NmuCI	GTSAC	3 cut(s)	247, 427, 437
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	99, 278
PkrI	GCNGC	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	365
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	156, 218
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	298, 327, 394
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	48, 367
SduI	GDGCHC	2 cut(s)	219, 309
SetI	ASST	8 cut(s)	38, 108, 129, 261, 309, 381, 473, 481
SfaNI	GCATC	2 cut(s)	33, 220
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SnaBI	TACGTA	1 cut(s)	259
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	1 cut(s)	56
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	46, 365
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	102, 402
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	99, 278
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	2 cut(s)	120, 256
TseFI	GTSAC	3 cut(s)	247, 427, 437
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	3 cut(s)	247, 427, 437
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	120, 256
VpaK11BI	GGWCC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.