Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

345412 .. 348362

Gene Structure 2951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGAAACAATCTTACTTACCATCAGAGACACCAAGTGGGATCAAGAGGCTAAGAGAAGAGGAGCTGCAACTTCTGCGAGGAAATGGCGAGGGTGAAAGGAAAGCATCTGAAAGGATTTACGATTATGATACATACAATGATCTTGGAGACCCGGATAGCAAAGACGAGTTGGCTAGGCCTGTCCTTGGTGGCAAAGACCACCCGTACCCTAGGCGCTGCAGAACTGGACGACCACGCACTAAAAAGGATCCATTGTCAGAGGAAAGAAGCAGCAGCGTGTATGTGCCAAGAGATGAAGCGTTTGCAGAGTTGAAACAACTCACATTCTCTGGAAAGACCCTGAAATCTGTGCTGCACGCATTGCTTCCTCAGCTTGAGATAACACTTGTTGATCCAGAGCTAGGATTTCCCTACTTCACAGCCATAGATTCATTGTTCAATGAAGGAGTCACATTGCCTAAGCCAAAATCTAGTGGCTTTTTTCAGTCTATCATCCCAAGGCTAGTCAAGGCAATTAGGGATGGACAAGATGATCTCTTGCTCTTTGAGACCCCTGAAATACTTGATCGTGATAAATTTTCTTGGTTCAAAGATGAAGAATTTTCTCGACAAACTCTAGCTGGTCTTAATCCATATAGCATAGAACTAGTTACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCGGCTGAATCATTGATCACCACAGAACTGGTGGAGAAGGAGATCAGAGGCTTTATGACTTTCAATGTGGCCTTAAAAAGAAAGAAGCTCTTTATTTTGGATTATCATGATCTACTCATGCCTTATGTGAACAAAGTGAGAGAAGTTGAAGGAACCACACTGTATGGTTCTCGGACGCTTTTCTTCCTCACTGAGAATGGTACACTGAGGCCTGTTGCCATTGAACTCACTCGACCACCCATTGGTGACAAGCCCCAATGGAAGGAAGTGTTTACCCCAACATGGGATGCCACTGGTTGCTGGCTTTGGAGGCTTGCTAAAGCCCATGTTTGTGCTCATGATTCGGGCTATCATCAACTTATCATCCACTGGCTGAGGACTCATTGTTGTACAGAACCATACATAATTGCAACTAATCGACAACTAAGTGCAATGCATCCCATCTATAGGCTTCTACATCCTCATTTCCGTTATACAATGGAAATCAATGCTCTGGCTCGAGAAAGCCTCATTAATGCAGGTGGAATCATTGAGACCTGCTTCTCACCAGCAAAGTACTCAATGGAGCTTAGTTCTGCTGCTTATGACCAGCTTTGGCGCTTTGACATGGAAGCTTTGCCTGCAGATCTAATCAGAAGGGGAATGGCAGTTGAGGATCCTACAGCTGAGCATGGTGTGAAGCTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTCTGTGGGATGCCATTAAGGAGTGGGTGGGTGACTATGTGAACCACTATTATCCAGACCCAACTCTTGTTGAATGTGATAACGAACTTCAAGCTTGGTGGACAGAAGTTAGAACCGAAGGCCATGCAGACAAAAAAGATGAACCATGGTGGCCTGTTTTGAAAACCCCAGAAGATCTCATTCAAACTTTGACAACTATAATTTGGGTTACATCTGGACATCATGCTGCAGTGAACTTTGGTCAGTACCCGTATGCCGGATACTTCCCGAACCGGCCTACAATAGCTCGAAGCAACATGCCAACCGAAGATCCAAACGAGGATCTTTTTAAGATATTTTTGAAGAAACCAGAAGCTGCATTGCTGAGGTGCTTCCCCTCACAGATTCAAGCAACAAAAGTGATGGCTGTCTTGGATGTATTATCAAACCATTCACCAGATGAGGAGTATATTGGTGGGAATGTGGAGTCATCTTGGGCTGAAAACCCAGTGATAAATGCAGCTTTCGAGCGGTTCAACGGCAATTTGAAGAGGCTAGAAGGAATTATCGATGAGAGGAACACCAATATGAAGCTGAAAAACAGAGTGGGAGCAGGGGTTGTTCCATATGAGCTTTTGAAGCCATTCTCAGAACCGGGGGTCACAGGAAAGGGAGTTCCCAACAGCATCTCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

697

Amino Acids

79.59

Weight (kDa)

5.45

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	13 - 680	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1205
Acc36I	ACCTGC	2 cut(s)	1205, 1241
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccBSI	CCGCTC	1 cut(s)	1927
AciI	CCGC	1 cut(s)	1927
AclWI	GGATC	8 cut(s)	47, 242, 255, 386, 1346, 1359, 1721, 1746
AcoI	YGGCCR	1 cut(s)	659
AcsI	RAATTY	2 cut(s)	575, 599
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	5 cut(s)	206, 898, 1087, 1253, 1664
AfiI	CCNNNNNNNGG	8 cut(s)	185, 401, 938, 958, 978, 979, 1143, 1673
AhlI	ACTAGT	1 cut(s)	646
AloI	GAACNNNNNNTCC	2 cut(s)	2055, 2087
Alw21I	GWGCWC	1 cut(s)	1033
Alw26I	GTCTC	5 cut(s)	20, 141, 542, 1223, 1418
AlwI	GGATC	8 cut(s)	47, 242, 255, 386, 1346, 1359, 1721, 1746
AlwNI	CAGNNNCTG	1 cut(s)	1772
Ama87I	CYCGRG	2 cut(s)	683, 1194
AoxI	GGCC	8 cut(s)	176, 659, 694, 765, 905, 1537, 1568, 1691
ApeKI	GCWGC	9 cut(s)	64, 216, 270, 273, 352, 1274, 1643, 1772, 1916
ApoI	RAATTY	2 cut(s)	575, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	1382, 1414
AseI	ATTAAT	1 cut(s)	1209
Asp700I	GAANNNNTTC	1 cut(s)	2039
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	216, 1296
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	3 cut(s)	152, 698, 2052
AsuHPI	GGTGA	6 cut(s)	104, 706, 953, 1233, 1460, 1842
AvaI	CYCGRG	2 cut(s)	683, 1194
AvrII	CCTAGG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	661
BamHI	GGATCC	2 cut(s)	247, 1351
BbsI	GAAGAC	1 cut(s)	1395
Bbv12I	GWGCWC	1 cut(s)	1033
BbvCI	CCTCAGC	3 cut(s)	369, 1070, 1781
BbvI	GCAGC	9 cut(s)	51, 203, 282, 285, 339, 1261, 1630, 1759, 1928
BccI	CCATC	5 cut(s)	28, 515, 1145, 1403, 1813
BceAI	ACGGC	1 cut(s)	1951
BcgI	CGANNNNNNTGC	2 cut(s)	1523, 1557
BciVI	GTATCC	1 cut(s)	1670
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	3 cut(s)	152, 698, 2052
BcoDI	GTCTC	5 cut(s)	20, 141, 542, 1223, 1418
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	8 cut(s)	174, 210, 401, 471, 503, 617, 647, 1952
BfmI	CTRYAG	5 cut(s)	217, 1141, 1317, 1356, 1644
BfoI	RGCGCY	2 cut(s)	217, 1297
BfuAI	ACCTGC	2 cut(s)	1205, 1241
BfuI	GTATCC	1 cut(s)	1670
BglII	AGATCT	2 cut(s)	1321, 1591
BisI	GCNGC	9 cut(s)	65, 217, 271, 274, 353, 1275, 1644, 1773, 1917
BlnI	CCTAGG	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	1362
BlsI	GCNGC	9 cut(s)	66, 218, 272, 275, 354, 1276, 1645, 1774, 1918
BmcAI	AGTACT	1 cut(s)	1253
Bme1390I	CCNGG	3 cut(s)	152, 698, 2052
BmeT110I	CYCGRG	2 cut(s)	683, 1194
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	3 cut(s)	249, 850, 1353
BmrFI	CCNGG	3 cut(s)	152, 698, 2052
BmrI	ACTGGG	1 cut(s)	1898
BmsI	GCATC	4 cut(s)	113, 973, 1141, 1417
BmuI	ACTGGG	1 cut(s)	1898
BpiI	GAAGAC	1 cut(s)	1395
BplI	GAGNNNNNCTC	2 cut(s)	1188, 1220
Bpu10I	CCTNAGC	4 cut(s)	369, 459, 1070, 1781
Bpu1102I	GCTNAGC	1 cut(s)	1362
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	3 cut(s)	152, 698, 2052
Bsa29I	ATCGAT	1 cut(s)	1965
BsaI	GGTCTC	4 cut(s)	141, 542, 1223, 1418
BsaJI	CCNNGG	5 cut(s)	184, 209, 497, 1562, 2051
BsaXI	ACNNNNNCTCC	3 cut(s)	1998, 2028, 2069
Bsc4I	CCNNNNNNNGG	8 cut(s)	185, 401, 938, 958, 978, 979, 1143, 1673
Bse118I	RCCGGY	1 cut(s)	1689
Bse1I	ACTGG	5 cut(s)	229, 729, 994, 1070, 1904
Bse3DI	GCAATG	4 cut(s)	359, 452, 1134, 1775
BseCI	ATCGAT	1 cut(s)	1965
BseDI	CCNNGG	5 cut(s)	184, 209, 497, 1562, 2051
BseGI	GGATG	8 cut(s)	492, 526, 988, 1059, 1132, 1153, 1432, 1837
BseLI	CCNNNNNNNGG	8 cut(s)	185, 401, 938, 958, 978, 979, 1143, 1673
BseMI	GCAATG	4 cut(s)	359, 452, 1134, 1775
BseMII	CTCAG	7 cut(s)	383, 879, 893, 1061, 1353, 1772, 2058
BseNI	ACTGG	5 cut(s)	229, 729, 994, 1070, 1904
BseRI	GAGGAG	2 cut(s)	74, 1874
BseXI	GCAGC	9 cut(s)	51, 203, 282, 285, 339, 1261, 1630, 1759, 1928
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	8 cut(s)	178, 661, 696, 767, 907, 1539, 1570, 1693
BshVI	ATCGAT	1 cut(s)	1965
BsiHKAI	GWGCWC	1 cut(s)	1033
BsiHKCI	CYCGRG	2 cut(s)	683, 1194
BsiSI	CCGG	5 cut(s)	152, 698, 1674, 1690, 2051
BslI	CCNNNNNNNGG	8 cut(s)	185, 401, 938, 958, 978, 979, 1143, 1673
BsmAI	GTCTC	5 cut(s)	20, 141, 542, 1223, 1418
BsnI	GGCC	8 cut(s)	178, 661, 696, 767, 907, 1539, 1570, 1693
Bso31I	GGTCTC	4 cut(s)	141, 542, 1223, 1418
BsoBI	CYCGRG	2 cut(s)	683, 1194
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp1407I	TGTACA	1 cut(s)	1085
Bsp1720I	GCTNAGC	1 cut(s)	1362
Bsp19I	CCATGG	1 cut(s)	1562
BspACI	CCGC	1 cut(s)	1927
BspANI	GGCC	8 cut(s)	178, 661, 696, 767, 907, 1539, 1570, 1693
BspCNI	CTCAG	7 cut(s)	382, 880, 894, 1062, 1354, 1773, 2057
BspDI	ATCGAT	1 cut(s)	1965
BspHI	TCATGA	2 cut(s)	802, 1033
BspLI	GGNNCC	3 cut(s)	249, 850, 1353
BspMAI	CTGCAG	3 cut(s)	221, 1321, 1648
BspMI	ACCTGC	2 cut(s)	1205, 1241
BspPI	GGATC	8 cut(s)	47, 242, 255, 386, 1346, 1359, 1721, 1746
BspTNI	GGTCTC	4 cut(s)	141, 542, 1223, 1418
BsrBI	CCGCTC	1 cut(s)	1927
BsrDI	GCAATG	4 cut(s)	359, 452, 1134, 1775
BsrFI	RCCGGY	1 cut(s)	1689
BsrGI	TGTACA	1 cut(s)	1085
BsrI	ACTGG	5 cut(s)	229, 729, 994, 1070, 1904
BssAI	RCCGGY	1 cut(s)	1689
BssECI	CCNNGG	5 cut(s)	184, 209, 497, 1562, 2051
BssT1I	CCWWGG	4 cut(s)	184, 209, 497, 1562
Bst4CI	ACNGT	1 cut(s)	858
Bst6I	CTCTTC	2 cut(s)	51, 1940
BstAPI	GCANNNNNTGC	2 cut(s)	73, 361
BstAUI	TGTACA	1 cut(s)	1085
BstC8I	GCNNGC	4 cut(s)	357, 998, 1011, 1317
BstDSI	CCRYGG	1 cut(s)	1562
BstF5I	GGATG	8 cut(s)	492, 526, 988, 1059, 1132, 1153, 1432, 1837
BstH2I	RGCGCY	2 cut(s)	217, 1297
BstHHI	GCGC	2 cut(s)	216, 1296
BstMAI	GTCTC	5 cut(s)	20, 141, 542, 1223, 1418
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 361, 370, 1006, 1316, 2035
BstNSI	RCATGY	1 cut(s)	1717
BstSCI	CCNGG	3 cut(s)	150, 696, 2050
BstSFI	CTRYAG	5 cut(s)	217, 1141, 1317, 1356, 1644
BstV1I	GCAGC	9 cut(s)	51, 203, 282, 285, 339, 1261, 1630, 1759, 1928
BstV2I	GAAGAC	1 cut(s)	1395
BstX2I	RGATCY	6 cut(s)	247, 1321, 1351, 1591, 1726, 1738
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	6 cut(s)	247, 1321, 1351, 1591, 1726, 1738
Bsu15I	ATCGAT	1 cut(s)	1965
BsuI	GTATCC	1 cut(s)	1670
BsuRI	GGCC	8 cut(s)	178, 661, 696, 767, 907, 1539, 1570, 1693
BsuTUI	ATCGAT	1 cut(s)	1965
BtgI	CCRYGG	1 cut(s)	1562
BtsCI	GGATG	8 cut(s)	492, 526, 988, 1059, 1132, 1153, 1432, 1837
BtsI	GCAGTG	1 cut(s)	1653
BtsIMutI	CAGTG	7 cut(s)	854, 885, 899, 987, 1063, 1653, 1911
BveI	ACCTGC	2 cut(s)	1205, 1241
Cac8I	GCNNGC	4 cut(s)	357, 998, 1011, 1317
CaiI	CAGNNNCTG	1 cut(s)	1772
CciI	TCATGA	2 cut(s)	802, 1033
CfoI	GCGC	2 cut(s)	216, 1296
Cfr10I	RCCGGY	1 cut(s)	1689
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	1965
CseI	GACGC	1 cut(s)	880
Csp6I	GTAC	5 cut(s)	205, 897, 1086, 1252, 1663
CspCI	CAANNNNNGTGG	2 cut(s)	1496, 1531
CviQI	GTAC	5 cut(s)	205, 897, 1086, 1252, 1663
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	659
Eam1104I	CTCTTC	2 cut(s)	51, 1940
EarI	CTCTTC	2 cut(s)	51, 1940
Eco130I	CCWWGG	4 cut(s)	184, 209, 497, 1562
Eco147I	AGGCCT	2 cut(s)	178, 907
Eco31I	GGTCTC	4 cut(s)	141, 542, 1223, 1418
Eco88I	CYCGRG	2 cut(s)	683, 1194
EcoT14I	CCWWGG	4 cut(s)	184, 209, 497, 1562
EcoT22I	ATGCAT	1 cut(s)	1134
ErhI	CCWWGG	4 cut(s)	184, 209, 497, 1562
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FauNDI	CATATG	1 cut(s)	2023
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	9 cut(s)	65, 217, 271, 274, 353, 1275, 1644, 1773, 1917
FokI	GGATG	8 cut(s)	479, 533, 995, 1046, 1119, 1140, 1439, 1844
Fsp4HI	GCNGC	9 cut(s)	65, 217, 271, 274, 353, 1275, 1644, 1773, 1917
FspBI	CTAG	8 cut(s)	174, 210, 401, 471, 503, 617, 647, 1952
GlaI	GCGC	2 cut(s)	215, 1295
GluI	GCNGC	9 cut(s)	65, 217, 271, 274, 353, 1275, 1644, 1773, 1917
HaeII	RGCGCY	2 cut(s)	217, 1297
HaeIII	GGCC	8 cut(s)	178, 661, 696, 767, 907, 1539, 1570, 1693
HapII	CCGG	5 cut(s)	152, 698, 1674, 1690, 2051
HgaI	GACGC	1 cut(s)	880
HhaI	GCGC	2 cut(s)	216, 1296
Hin6I	GCGC	2 cut(s)	214, 1294
HinP1I	GCGC	2 cut(s)	214, 1294
HindIII	AAGCTT	2 cut(s)	1308, 1509
HinfI	GANTC	8 cut(s)	428, 447, 704, 1037, 1075, 1221, 1801, 1883
HpaII	CCGG	5 cut(s)	152, 698, 1674, 1690, 2051
HphI	GGTGA	6 cut(s)	104, 706, 953, 1233, 1460, 1842
Hpy166II	GTNNAC	7 cut(s)	674, 826, 899, 969, 1459, 1518, 1651
Hpy188I	TCNGA	7 cut(s)	25, 109, 259, 743, 870, 1331, 2047
Hpy8I	GTNNAC	7 cut(s)	674, 826, 899, 969, 1459, 1518, 1651
HpyAV	CCTTC	7 cut(s)	437, 727, 839, 952, 1326, 1529, 1949
HpyCH4III	ACNGT	1 cut(s)	858
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 361, 370, 1006, 1316, 2035
HspAI	GCGC	2 cut(s)	214, 1294
Ksp22I	TGATCA	1 cut(s)	711
LmnI	GCTCC	3 cut(s)	61, 1261, 2006
Lsp1109I	GCAGC	9 cut(s)	51, 203, 282, 285, 339, 1261, 1630, 1759, 1928
LweI	GCATC	4 cut(s)	113, 973, 1141, 1417
MaeI	CTAG	8 cut(s)	174, 210, 401, 471, 503, 617, 647, 1952
MaeIII	GTNAC	6 cut(s)	448, 649, 941, 1448, 1624, 2056
MbiI	CCGCTC	1 cut(s)	1927
MboII	GAAGA	8 cut(s)	68, 608, 871, 1400, 1601, 1736, 1771, 1957
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	6 cut(s)	247, 1321, 1351, 1591, 1726, 1738
MhlI	GDGCHC	1 cut(s)	1033
MlsI	TGGCCA	1 cut(s)	661
MluCI	AATT	8 cut(s)	513, 575, 599, 1101, 1383, 1617, 1939, 1959
MluNI	TGGCCA	1 cut(s)	661
MlyI	GAGTC	3 cut(s)	456, 1069, 1892
Mox20I	TGGCCA	1 cut(s)	661
Mph1103I	ATGCAT	1 cut(s)	1134
MroXI	GAANNNNTTC	1 cut(s)	2039
MscI	TGGCCA	1 cut(s)	661
MseI	TTAA	5 cut(s)	627, 770, 1209, 1434, 1746
MslI	CAYNNNNRTG	2 cut(s)	1026, 1982
Msp20I	TGGCCA	1 cut(s)	661
MspA1I	CMGCKG	1 cut(s)	1361
MspI	CCGG	5 cut(s)	152, 698, 1674, 1690, 2051
MspR9I	CCNGG	3 cut(s)	152, 698, 2052
MunI	CAATTG	1 cut(s)	1383
MwoI	GCNNNNNNNGC	6 cut(s)	73, 361, 370, 1006, 1316, 2035
NciI	CCSGG	3 cut(s)	152, 698, 2052
NcoI	CCATGG	1 cut(s)	1562
NdeI	CATATG	1 cut(s)	2023
NlaIV	GGNNCC	3 cut(s)	249, 850, 1353
NmuCI	GTSAC	4 cut(s)	448, 941, 1448, 2056
NsiI	ATGCAT	1 cut(s)	1134
NspI	RCATGY	1 cut(s)	1717
PaeR7I	CTCGAG	1 cut(s)	1194
PagI	TCATGA	2 cut(s)	802, 1033
PaqCI	CACCTGC	1 cut(s)	1205
PceI	AGGCCT	2 cut(s)	178, 907
PdmI	GAANNNNTTC	1 cut(s)	2039
PfeI	GAWTC	5 cut(s)	428, 704, 1037, 1221, 1801
PflMI	CCANNNNNTGG	1 cut(s)	938
PkrI	GCNGC	9 cut(s)	66, 218, 272, 275, 354, 1276, 1645, 1774, 1918
PleI	GAGTC	3 cut(s)	455, 1069, 1891
PpsI	GAGTC	3 cut(s)	455, 1069, 1891
PshBI	ATTAAT	1 cut(s)	1209
PspN4I	GGNNCC	3 cut(s)	249, 850, 1353
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	3 cut(s)	221, 1321, 1648
PstNI	CAGNNNCTG	1 cut(s)	1772
PsuI	RGATCY	6 cut(s)	247, 1321, 1351, 1591, 1726, 1738
PvuII	CAGCTG	1 cut(s)	1361
RsaI	GTAC	5 cut(s)	206, 898, 1087, 1253, 1664
RsaNI	GTAC	5 cut(s)	205, 897, 1086, 1252, 1663
RseI	CAYNNNNRTG	2 cut(s)	1026, 1982
SaqAI	TTAA	5 cut(s)	627, 770, 1209, 1434, 1746
SatI	GCNGC	9 cut(s)	65, 217, 271, 274, 353, 1275, 1644, 1773, 1917
Sau96I	GGNCC	1 cut(s)	695
ScaI	AGTACT	1 cut(s)	1253
SchI	GAGTC	3 cut(s)	456, 1069, 1892
ScrFI	CCNGG	3 cut(s)	152, 698, 2052
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	4 cut(s)	113, 973, 1141, 1417
SfcI	CTRYAG	5 cut(s)	217, 1141, 1317, 1356, 1644
Sfr274I	CTCGAG	1 cut(s)	1194
SlaI	CTCGAG	1 cut(s)	1194
SmiMI	CAYNNNNRTG	2 cut(s)	1026, 1982
SmlI	CTYRAG	2 cut(s)	374, 1194
SmoI	CTYRAG	2 cut(s)	374, 1194
SpeI	ACTAGT	1 cut(s)	646
Sse9I	AATT	8 cut(s)	513, 575, 599, 1101, 1383, 1617, 1939, 1959
SseBI	AGGCCT	2 cut(s)	178, 907
SsiI	CCGC	1 cut(s)	1927
SspMI	CTAG	8 cut(s)	174, 210, 401, 471, 503, 617, 647, 1952
StuI	AGGCCT	2 cut(s)	178, 907
StyD4I	CCNGG	3 cut(s)	150, 696, 2050
StyI	CCWWGG	4 cut(s)	184, 209, 497, 1562
TaaI	ACNGT	1 cut(s)	858
TaqI	TCGA	7 cut(s)	607, 928, 1114, 1195, 1705, 1923, 1965
TasI	AATT	8 cut(s)	513, 575, 599, 1101, 1383, 1617, 1939, 1959
TatI	WGTACW	2 cut(s)	1085, 1251
TfiI	GAWTC	5 cut(s)	428, 704, 1037, 1221, 1801
Tru1I	TTAA	5 cut(s)	627, 770, 1209, 1434, 1746
Tru9I	TTAA	5 cut(s)	627, 770, 1209, 1434, 1746
TscAI	CASTG	7 cut(s)	861, 892, 906, 994, 1070, 1653, 1911
TseFI	GTSAC	4 cut(s)	448, 941, 1448, 2056
TseI	GCWGC	9 cut(s)	64, 216, 270, 273, 352, 1274, 1643, 1772, 1916
Tsp45I	GTSAC	4 cut(s)	448, 941, 1448, 2056
TspDTI	ATGAA	7 cut(s)	17, 309, 420, 456, 609, 1572, 2000
TspGWI	ACGGA	2 cut(s)	668, 1154
TspRI	CASTG	7 cut(s)	861, 892, 906, 994, 1070, 1653, 1911
Van91I	CCANNNNNTGG	1 cut(s)	938
VspI	ATTAAT	1 cut(s)	1209
XapI	RAATTY	2 cut(s)	575, 599
XceI	RCATGY	1 cut(s)	1717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XhoI	CTCGAG	1 cut(s)	1194
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	2039
XspI	CTAG	8 cut(s)	174, 210, 401, 471, 503, 617, 647, 1952
ZrmI	AGTACT	1 cut(s)	1253
Zsp2I	ATGCAT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.