Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Forward (+)

35168910 .. 35169689

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAGTTGAGGATCCCACAGCTGAGCATGGCTTAAAGCTAACGATTGAAGACTATCCATTTGCAAATGATGGTCTCATTCTTTGGGATGCTATTAAGGAGTGGGTGAGGGACTATGTGAACCACTACTATGCATACCCAACTCTTGTTGAGAATGATCAAGAGCTTCAAGCTTGGTGGACAGAAGTTAGAACAAAAGGCCACGCTGACAAAAAGGATGAGCCATGGTGGCCAGTTCTGAATACCCAAGATAACCTAATACAAGTTTTGACAACAATAATTTGGGTAACAGCTGGTCATCATGCAGCGGTAAACTTTGGCCAGTATATGTATGCCGGATACTTTCCAAATCGACCTACAATAGCTCGAACCAACATGCCAACTGAAGATCCATCTGAGGAGTATTTCAACAACTTTTTGAAGAAGCCGGAGTCTGCATTGCTAATGTGCTTCCCGTCACAGATTCAAGCAACCAAAGTGATGGCTGTCTTAGACGTGTTATCGAACCATTCACCTGATGAAGAGTATCTTGGTGAGAAAATGGAGTCCTCTTGGGCTGAAAATCCTGTCATCAAGGCTGCATTTGAGCGCTTCAATGGGAATTTGAAAAAGCTAGAAGTAATAATTGATGAGAGGAATACTAATATAAACCTGAAAAACAGAGTTGGAGCAGGGGTGGTTCCATATGAGCTTTTGAAGCCATTCTCAAAGCCTGGGGTCACAGGAATGGGAGTTCCTAATAGTATTTTCAATTTGAGTAATGATATTGATCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

259

Amino Acids

29.57

Weight (kDa)

4.9

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 234	1.5e-112	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	4 cut(s)	8, 21, 383, 764
AcoI	YGGCCR	2 cut(s)	230, 319
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	405
AfeI	AGCGCT	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	9 cut(s)	50, 170, 409, 421, 467, 595, 607, 697, 751
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	8 cut(s)	23, 40, 166, 173, 293, 365, 613, 691
AluI	AGCT	8 cut(s)	23, 40, 166, 173, 293, 365, 613, 691
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	4 cut(s)	8, 21, 383, 764
Aor51HI	AGCGCT	1 cut(s)	590
AoxI	GGCC	3 cut(s)	199, 230, 319
ApeKI	GCWGC	2 cut(s)	305, 578
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	591
AsuHPI	GGTGA	3 cut(s)	118, 504, 545
BalI	TGGCCA	2 cut(s)	232, 321
BamHI	GGATCC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	317, 565
BccI	CCATC	3 cut(s)	65, 400, 475
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	2 cut(s)	306, 579
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	2 cut(s)	307, 580
Bme1390I	CCNGG	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	15, 681
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	768
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	224, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bse1I	ACTGG	2 cut(s)	233, 322
Bse3DI	GCAATG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	224, 713
BseGI	GGATG	2 cut(s)	94, 223
BseJI	GATNNNNATC	1 cut(s)	768
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	15, 387
BseNI	ACTGG	2 cut(s)	233, 322
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	317, 565
BshFI	GGCC	3 cut(s)	201, 232, 321
BsiSI	CCGG	2 cut(s)	336, 428
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	201, 232, 321
Bso31I	GGTCTC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	13, 157, 388, 769
Bsp1720I	GCTNAGC	1 cut(s)	24
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	3 cut(s)	201, 232, 321
BspCNI	CTCAG	2 cut(s)	16, 388
BspLI	GGNNCC	2 cut(s)	15, 681
BspPI	GGATC	4 cut(s)	8, 21, 383, 764
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	233, 322
BssECI	CCNNGG	2 cut(s)	224, 713
BssMI	GATC	4 cut(s)	13, 157, 388, 769
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	714
Bst6I	CTCTTC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	24, 396, 490
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	94, 223
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	4 cut(s)	16, 160, 391, 772
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	13, 157, 388, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 697
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	317, 565
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	13, 388
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	2 cut(s)	13, 388
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	201, 232, 321
BtgI	CCRYGG	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	94, 223
CfoI	GCGC	1 cut(s)	591
CspCI	CAANNNNNGTGG	2 cut(s)	158, 193
CviAII	CATG	4 cut(s)	29, 225, 302, 376
DdeI	CTNAG	3 cut(s)	24, 396, 490
DpnI	GATC	4 cut(s)	15, 159, 390, 771
DpnII	GATC	4 cut(s)	13, 157, 388, 769
EaeI	YGGCCR	2 cut(s)	230, 319
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	32, 228, 305, 379
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	4 cut(s)	28, 224, 301, 375
FauNDI	CATATG	1 cut(s)	685
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	306, 579
FokI	GGATG	2 cut(s)	101, 230
Fsp4HI	GCNGC	2 cut(s)	306, 579
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	2 cut(s)	306, 579
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	3 cut(s)	201, 232, 321
HapII	CCGG	2 cut(s)	336, 428
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	4 cut(s)	32, 228, 305, 379
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	431, 463, 545
HpaII	CCGG	2 cut(s)	336, 428
HphI	GGTGA	3 cut(s)	118, 504, 545
Hpy166II	GTNNAC	3 cut(s)	121, 180, 313
Hpy188I	TCNGA	2 cut(s)	240, 397
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	121, 180, 313
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	5 cut(s)	65, 134, 305, 437, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 697
HpyF3I	CTNAG	3 cut(s)	24, 396, 490
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	32, 228, 305, 379
HspAI	GCGC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	13, 157, 388, 769
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	2 cut(s)	317, 565
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	3 cut(s)	286, 456, 718
MalI	GATC	4 cut(s)	15, 159, 390, 771
MboI	GATC	4 cut(s)	13, 157, 388, 769
MboII	GAAGA	4 cut(s)	62, 398, 433, 533
MflI	RGATCY	2 cut(s)	13, 388
MlsI	TGGCCA	2 cut(s)	232, 321
MluCI	AATT	4 cut(s)	279, 601, 624, 751
MluNI	TGGCCA	2 cut(s)	232, 321
MlyI	GAGTC	2 cut(s)	440, 554
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	5 cut(s)	4, 102, 391, 559, 627
Mox20I	TGGCCA	2 cut(s)	232, 321
Mph1103I	ATGCAT	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	701
MscI	TGGCCA	2 cut(s)	232, 321
MseI	TTAA	2 cut(s)	35, 96
MslI	CAYNNNNRTG	2 cut(s)	129, 725
Msp20I	TGGCCA	2 cut(s)	232, 321
MspA1I	CMGCKG	3 cut(s)	23, 293, 308
MspI	CCGG	2 cut(s)	336, 428
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	229, 697
NcoI	CCATGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	4 cut(s)	13, 157, 388, 769
NlaIII	CATG	4 cut(s)	32, 228, 305, 379
NlaIV	GGNNCC	2 cut(s)	15, 681
NmuCI	GTSAC	2 cut(s)	456, 718
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	307, 580
PleI	GAGTC	2 cut(s)	439, 553
PpsI	GAGTC	2 cut(s)	439, 553
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	15, 681
PsuI	RGATCY	2 cut(s)	13, 388
PvuII	CAGCTG	2 cut(s)	23, 293
RseI	CAYNNNNRTG	2 cut(s)	129, 725
SaqAI	TTAA	2 cut(s)	35, 96
SatI	GCNGC	2 cut(s)	306, 579
Sau3AI	GATC	4 cut(s)	13, 157, 388, 769
SchI	GAGTC	2 cut(s)	440, 554
ScrFI	CCNGG	1 cut(s)	714
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	129, 725
Sse9I	AATT	4 cut(s)	279, 601, 624, 751
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	1 cut(s)	224
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	3 cut(s)	352, 367, 503
TasI	AATT	4 cut(s)	279, 601, 624, 751
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	35, 96
Tru9I	TTAA	2 cut(s)	35, 96
TseFI	GTSAC	2 cut(s)	456, 718
TseI	GCWGC	2 cut(s)	305, 578
Tsp45I	GTSAC	2 cut(s)	456, 718
TspDTI	ATGAA	1 cut(s)	534
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.