Rroxscaffold_1G00004130

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
5587085 .. 5592409
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004130.1

Sequence Viewer

Length: 2349 bp
ATGTTGAAACCCAGACTACTTCACCCATCAGAGTCTCTGTTTCTCCACCCCAAGCCGTTCCTCCATGGAAGCAGTGGCCGCGGCATAGTGACGGAAACTGAAGATGCAGTGGTCGACAAAGAAGTAGAAGTAGTGACCACAAAAGAAGTGGTGACGGAGAAGTTCACGAGTGTTAAAGCAACCATAACGGTGACGCTTACTGTTGGAGGGTTTCTGAACAACTTAGGCCTAACCCGAGGAATCGATGATGTCAGAGATATGCTTGGTCAAACTCTCTTCATGGATCTTATTAGTGCTCACGTTGATCCCAAAACTGGATCAGAGAAGGAGCATGTTGCTGGGTTCGCACACAGGAGTAGCCAGAAGGACAGCGAGATTGTATACGAGGCAGATTTTAAAGTTCCATTAGATTTTGGAGAAGTGGGCGCCGTTTTAATAGAGAATGAGCACCACAAGGAGATGTATCTCAAGGATATTGTGCTGGATGGCTTGCCTAATGGTCCTGTACTACTTACCTGTAATTCATGGCTCCATTCCAAGTATGACAATCCTGCGAAGAGAGTCTTCTTCACAAACAAGTCATATTTGCCATCTCAAACACCAAGTGCTTTGGTGAGGCTAAGAGAAGAGGAGCTTGTTACTTTGCGTGGCAATGGCCAAGGAGAACGCAAGAGCTTTGAGAGAGTATACGACTATGATGTCTACAATGATCTTGGGGATCCTGATTCAAAATTAAGCTTAAAAAGAACTACTCACTCTACAATGAAGGCATTAGCTTGCCTCCCCTTAAAAGATCAAGGGGTTCTCAGAACCATGGTTCCCAGGCTAGTCAATGCTATAGCTTCCGGAGAAGATGTTCTGCGGTTTGTGCCCCCAGAAACAATGAATAGAGACAAATTCTTTTGGTTTAGGGATGAGGAATTTGCTAGGCAGACTCTTGCGGGTCTTAACCCATATAGCATCAAGTTGGTGACGGAATGGCCACTGAGGAGTGAATTGGACCCTGACGTATATGGTCCTCCAGAATCTGCAATCACCACGAAAATGATTGAGCAAGAGATCAGGGGCTTTGCGACCATCAAAGAGGCCATAAGAGAAAAGAAGTTGTTTATACTAGATTACCATGATTTGTTCTTACCGTACGTGGGCAAAGTAAGAGAGATCGAAGGTACAACTCTGTATGGATCTAGGACATTGTTTTTCCTCACCCCAGAAGGCACATTGAGGCCGCTGGTTATTGAATTGACTCGACCGCCACTGGACGGAAAGCCTCAGTGGAAGCAAACTTTCCAACCCAGCTGGAATGCCACCGGTGTCTGGCTTTGGAGGATCGCCAAAGCTCATGTCCTTGCTCACGACTCCGGTTACCATCAACTTGTTACTCACTGGCTAAGAACACATTGTGCCACAGAGCCATATATAATCGCAACAAATCGGCAACTGAGTGTGATGCACCCAATCTATCGATTGTTGCATCCCCATTTCAGATACACGATGGAGATTAATGCTCTTGCTCGCGAATCACTAGTCAATGCCGGTGGCATCATTGAAACCTCATTCTCGCCGGGAAAATATTCCAATGAGATTTGCTCTATTGCCTATGGTAAGGATTGGCGATTCGACCTAGAAGCACTGCCCGCTGACCTTATTCGCAGGGGCATGGCCATTAAGGACCCAACTGCTCCACATGGTCTGAGGTTATCAATTCAAGACTACCCTTTTGCTAATGACGGGCTCCTTCTCTGGGATGCCCTCAAACAATGGGTCACGGATTATGTAAGCCACTATTACAAAGATTCCACCCTTGTACAAACTGATCAAGAGCTCCAAGCATGGTGGACAGAGATCAGAACAGTAGGGCACGGAGACAAAAAGGATGAACCCTGGTGGCCTGAGCTAAATACCCCTCAAGATCTCATCGACATTATCACAACAATAGTTTGGGTCACATCCGGCCACCACGCAGCAGTCAACTTTGGTCAATACACCTATGCAGGCTACTTCCCTAACCACCCAACAATTGCAAGGACCAACGTTCCCACGGAGGACCCCGACGACGAGCAACAAGGATCATGGCTGTTTTGGACATTTTGTCTAAATCATTCGCCTGATGAAGAGTACATGGTAGAGAAGATGGAGGACGCATGGGCTGAAGACGAAGTCATAAGGGCGGCGTACGAGCGTTTTAAAGGGAGGTTGATGATGCTTGAAGGAACTATTGATGATAGAAATGCTAATTATGAGTTGAAGAATCGAAGTGGTGCTGGGGTTGTGCCTTACGAGCTTCTAAAGCCCTTCTCAGAACCTGGGGTTACAGGAAAGGGAGTCCCATATAGCATCTCTATTTGA

Protein Analysis

782

Amino Acids

89.11

Weight (kDa)

5.58

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 119 - 190 3e-09 PLAT/LH2 domain
Lipoxygenase PF00305 204 - 251 4.8e-16 Lipoxygenase
Lipoxygenase PF00305 273 - 686 5.7e-216 Lipoxygenase
Lipoxygenase PF00305 700 - 765 7.2e-18 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AccB1I GGYRCC 1 cut(s) 425
AccI GTMKAC 4 cut(s) 114, 381, 687, 702
AccII CGCG 2 cut(s) 81, 1518
AccIII TCCGGA 1 cut(s) 845
AciI CCGC 8 cut(s) 79, 81, 862, 941, 1229, 1253, 1638, 2171
AclI AACGTT 1 cut(s) 2034
AclWI GGATC 8 cut(s) 291, 299, 325, 713, 726, 1192, 1337, 2077
AcoI YGGCCR 5 cut(s) 76, 655, 980, 1662, 1954
AcsI RAATTY 2 cut(s) 896, 920
AcuI CTGAAG 2 cut(s) 120, 2172
AcyI GRCGYC 1 cut(s) 426
AdeI CACNNNGTG 2 cut(s) 605, 1403
AfaI GTAC 6 cut(s) 507, 1142, 1171, 1809, 2120, 2177
AfiI CCNNNNNNNGG 5 cut(s) 314, 1145, 1262, 1317, 1744
AgeI ACCGGT 1 cut(s) 1310
AgsI TTSAA 7 cut(s) 7, 729, 1241, 1550, 1709, 2210, 2248
AhdI GACNNNNNGTC 1 cut(s) 2091
AhlI ACTAGT 1 cut(s) 1525
AjnI CCWGG 3 cut(s) 821, 1883, 2305
AloI GAACNNNNNNTCC 4 cut(s) 802, 834, 840, 872
Alw21I GWGCWC 3 cut(s) 298, 450, 1827
Alw26I GTCTC 3 cut(s) 39, 885, 1860
AlwI GGATC 8 cut(s) 291, 299, 325, 713, 726, 1192, 1337, 2077
AlwNI CAGNNNCTG 2 cut(s) 1028, 2306
Ama87I CYCGRG 1 cut(s) 234
Aor13HI TCCGGA 1 cut(s) 845
AoxI GGCC 9 cut(s) 76, 226, 655, 980, 1086, 1226, 1662, 1889, 1954
ApeKI GCWGC 1 cut(s) 1964
ApoI RAATTY 2 cut(s) 896, 920
ArsI GACNNNNNNTTYG 8 cut(s) 1329, 1361, 1512, 1544, 1703, 1735, 1749, 1781
AseI ATTAAT 1 cut(s) 1503
AsiGI ACCGGT 1 cut(s) 1310
Asp700I GAANNNNTTC 2 cut(s) 855, 1573
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
AsuC2I CCSGG 1 cut(s) 1566
AsuHPI GGTGA 7 cut(s) 14, 163, 202, 625, 982, 1027, 1198
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
BaeGI GKGCMC 2 cut(s) 873, 1863
BalI TGGCCA 3 cut(s) 657, 982, 1664
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 2 cut(s) 1737, 1827
BauI CACGAG 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 556, 2160
Bbv12I GWGCWC 3 cut(s) 298, 450, 1827
BbvI GCAGC 1 cut(s) 1976
BccI CCATC 7 cut(s) 34, 479, 598, 1085, 1377, 1489, 2128
BceAI ACGGC 2 cut(s) 40, 413
BciT130I CCWGG 3 cut(s) 823, 1885, 2307
BclI TGATCA 1 cut(s) 1816
BcnI CCSGG 1 cut(s) 1566
BcoDI GTCTC 3 cut(s) 39, 885, 1860
BcuI ACTAGT 1 cut(s) 1525
BfaI CTAG 6 cut(s) 827, 927, 1115, 1188, 1526, 1625
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 1 cut(s) 429
BglII AGATCT 1 cut(s) 1912
BisI GCNGC 5 cut(s) 79, 82, 1229, 1965, 2172
BlsI GCNGC 5 cut(s) 80, 83, 1230, 1966, 2173
Bme1390I CCNGG 4 cut(s) 823, 1566, 1885, 2307
Bme18I GGWCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
BmeRI GACNNNNNGTC 1 cut(s) 2091
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
BmiI GGNNCC 8 cut(s) 427, 530, 720, 819, 1002, 1674, 1736, 2049
BmrFI CCNGG 4 cut(s) 823, 1566, 1885, 2307
BmsI GCATC 7 cut(s) 94, 969, 1440, 1483, 1551, 1738, 2193
BpiI GAAGAC 2 cut(s) 556, 2160
BplI GAGNNNNNCTC 2 cut(s) 1574, 1606
BpmI CTGGAG 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 1893
BpuEI CTTGAG 2 cut(s) 452, 1893
BpuMI CCSGG 1 cut(s) 1566
Bsa29I ATCGAT 2 cut(s) 243, 1465
BsaAI YACGTR 1 cut(s) 1144
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 9 cut(s) 64, 79, 235, 658, 813, 821, 1883, 2040, 2306
BsaWI WCCGGW 3 cut(s) 845, 1310, 1361
BsaXI ACNNNNNCTCC 2 cut(s) 840, 870
Bsc4I CCNNNNNNNGG 5 cut(s) 314, 1145, 1262, 1317, 1744
Bse118I RCCGGY 2 cut(s) 1310, 1535
Bse1I ACTGG 3 cut(s) 319, 1263, 1391
Bse3DI GCAATG 1 cut(s) 658
BseAI TCCGGA 1 cut(s) 845
BseBI CCWGG 3 cut(s) 823, 1885, 2307
BseCI ATCGAT 2 cut(s) 243, 1465
BseDI CCNNGG 9 cut(s) 64, 79, 235, 658, 813, 821, 1883, 2040, 2306
BseGI GGATG 6 cut(s) 490, 919, 1474, 1753, 1882, 1949
BseLI CCNNNNNNNGG 5 cut(s) 314, 1145, 1262, 1317, 1744
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 7 cut(s) 820, 977, 1286, 1433, 1685, 1884, 2313
BseNI ACTGG 3 cut(s) 319, 1263, 1391
BseRI GAGGAG 2 cut(s) 644, 1003
BseSI GKGCMC 2 cut(s) 873, 1863
BseXI GCAGC 1 cut(s) 1976
BseYI CCCAGC 3 cut(s) 338, 1295, 2264
Bsh1236I CGCG 2 cut(s) 81, 1518
Bsh1285I CGRYCG 1 cut(s) 1253
BshFI GGCC 9 cut(s) 78, 228, 657, 982, 1088, 1228, 1664, 1891, 1956
BshNI GGYRCC 1 cut(s) 425
BshTI ACCGGT 1 cut(s) 1310
BshVI ATCGAT 2 cut(s) 243, 1465
BsiEI CGRYCG 1 cut(s) 1253
BsiHKAI GWGCWC 3 cut(s) 298, 450, 1827
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 6 cut(s) 846, 1311, 1362, 1536, 1565, 1953
BsiWI CGTACG 2 cut(s) 1140, 2175
BslFI GGGAC 1 cut(s) 2312
BslI CCNNNNNNNGG 5 cut(s) 314, 1145, 1262, 1317, 1744
BsmAI GTCTC 3 cut(s) 39, 885, 1860
BsmFI GGGAC 1 cut(s) 2312
BsmI GAATGC 1 cut(s) 1309
BsnI GGCC 9 cut(s) 78, 228, 657, 982, 1088, 1228, 1664, 1891, 1956
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 6 cut(s) 298, 450, 873, 1737, 1827, 1863
Bsp13I TCCGGA 1 cut(s) 845
Bsp1407I TGTACA 1 cut(s) 1807
Bsp19I CCATGG 2 cut(s) 64, 813
Bsp68I TCGCGA 1 cut(s) 1518
BspACI CCGC 8 cut(s) 79, 81, 862, 941, 1229, 1253, 1638, 2171
BspANI GGCC 9 cut(s) 78, 228, 657, 982, 1088, 1228, 1664, 1891, 1956
BspCNI CTCAG 7 cut(s) 819, 978, 1285, 1434, 1686, 1885, 2312
BspDI ATCGAT 2 cut(s) 243, 1465
BspEI TCCGGA 1 cut(s) 845
BspFNI CGCG 2 cut(s) 81, 1518
BspLI GGNNCC 8 cut(s) 427, 530, 720, 819, 1002, 1674, 1736, 2049
BspPI GGATC 8 cut(s) 291, 299, 325, 713, 726, 1192, 1337, 2077
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 2 cut(s) 1310, 1535
BsrGI TGTACA 1 cut(s) 1807
BsrI ACTGG 3 cut(s) 319, 1263, 1391
BssAI RCCGGY 2 cut(s) 1310, 1535
BssECI CCNNGG 9 cut(s) 64, 79, 235, 658, 813, 821, 1883, 2040, 2306
BssNAI GTATAC 2 cut(s) 382, 688
BssNI GRCGYC 1 cut(s) 426
BssSI CACGAG 1 cut(s) 166
BssT1I CCWWGG 3 cut(s) 64, 658, 813
Bst1107I GTATAC 2 cut(s) 382, 688
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 3 cut(s) 823, 1885, 2307
Bst4CI ACNGT 4 cut(s) 190, 202, 1140, 1855
Bst6I CTCTTC 4 cut(s) 281, 551, 621, 2109
BstACI GRCGYC 1 cut(s) 426
BstAUI TGTACA 1 cut(s) 1807
BstBAI YACGTR 1 cut(s) 1144
BstC8I GCNNGC 5 cut(s) 491, 778, 1516, 1638, 1996
BstDSI CCRYGG 4 cut(s) 64, 79, 813, 2040
BstEII GGTNACC 1 cut(s) 1364
BstF5I GGATG 6 cut(s) 490, 919, 1474, 1753, 1882, 1949
BstFNI CGCG 2 cut(s) 81, 1518
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstMAI GTCTC 3 cut(s) 39, 885, 1860
BstMCI CGRYCG 1 cut(s) 1253
BstMWI GCNNNNNNNGC 6 cut(s) 78, 344, 868, 1637, 2281, 2290
BstNI CCWGG 3 cut(s) 823, 1885, 2307
BstNSI RCATGY 1 cut(s) 335
BstPI GGTNACC 1 cut(s) 1364
BstSCI CCNGG 4 cut(s) 821, 1564, 1883, 2305
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 2 cut(s) 873, 1863
BstUI CGCG 2 cut(s) 81, 1518
BstV1I GCAGC 1 cut(s) 1976
BstV2I GAAGAC 2 cut(s) 556, 2160
BstX2I RGATCY 4 cut(s) 283, 718, 1184, 1912
BstYI RGATCY 4 cut(s) 283, 718, 1184, 1912
BstZ17I GTATAC 2 cut(s) 382, 688
Bsu15I ATCGAT 2 cut(s) 243, 1465
BsuRI GGCC 9 cut(s) 78, 228, 657, 982, 1088, 1228, 1664, 1891, 1956
BsuTUI ATCGAT 2 cut(s) 243, 1465
BtgI CCRYGG 4 cut(s) 64, 79, 813, 2040
BtsCI GGATG 6 cut(s) 490, 919, 1474, 1753, 1882, 1949
BtsI GCAGTG 3 cut(s) 79, 114, 1631
BtsIMutI CAGTG 7 cut(s) 79, 114, 983, 1256, 1280, 1384, 1631
BtuMI TCGCGA 1 cut(s) 1518
Cac8I GCNNGC 5 cut(s) 491, 778, 1516, 1638, 1996
CaiI CAGNNNCTG 2 cut(s) 1028, 2306
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 2 cut(s) 1310, 1535
Cfr13I GGNCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
Cfr42I CCGCGG 1 cut(s) 82
ClaI ATCGAT 2 cut(s) 243, 1465
CseI GACGC 2 cut(s) 202, 2150
Csp6I GTAC 6 cut(s) 506, 1141, 1170, 1808, 2119, 2176
CspAI ACCGGT 1 cut(s) 1310
CspCI CAANNNNNGTGG 6 cut(s) 129, 164, 1519, 1554, 1817, 1852
CviQI GTAC 6 cut(s) 506, 1141, 1170, 1808, 2119, 2176
DinI GGCGCC 1 cut(s) 427
DraI TTTAAA 2 cut(s) 397, 2188
DraIII CACNNNGTG 2 cut(s) 605, 1403
DrdI GACNNNNNNGTC 1 cut(s) 698
DriI GACNNNNNGTC 1 cut(s) 2091
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 5 cut(s) 76, 655, 980, 1662, 1954
Eam1104I CTCTTC 4 cut(s) 281, 551, 621, 2109
Eam1105I GACNNNNNGTC 1 cut(s) 2091
EarI CTCTTC 4 cut(s) 281, 551, 621, 2109
Ecl136II GAGCTC 1 cut(s) 1825
Eco130I CCWWGG 3 cut(s) 64, 658, 813
Eco147I AGGCCT 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 1737, 1827
Eco47I GGWCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
Eco53kI GAGCTC 1 cut(s) 1825
Eco57I CTGAAG 2 cut(s) 120, 2172
Eco88I CYCGRG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 1364
EcoICRI GAGCTC 1 cut(s) 1825
EcoO109I RGGNCCY 2 cut(s) 1672, 2047
EcoO65I GGTNACC 1 cut(s) 1364
EcoRII CCWGG 3 cut(s) 821, 1883, 2305
EcoT14I CCWWGG 3 cut(s) 64, 658, 813
EcoT38I GRGCYC 2 cut(s) 1737, 1827
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
ErhI CCWWGG 3 cut(s) 64, 658, 813
FalI AAGNNNNNCTT 4 cut(s) 548, 580, 618, 650
FaqI GGGAC 1 cut(s) 2312
FauI CCCGC 2 cut(s) 934, 1645
FbaI TGATCA 1 cut(s) 1816
FblI GTMKAC 4 cut(s) 114, 381, 687, 702
Fnu4HI GCNGC 5 cut(s) 79, 82, 1229, 1965, 2172
FokI GGATG 6 cut(s) 497, 926, 1461, 1760, 1889, 1936
FriOI GRGCYC 2 cut(s) 1737, 1827
Fsp4HI GCNGC 5 cut(s) 79, 82, 1229, 1965, 2172
FspBI CTAG 6 cut(s) 827, 927, 1115, 1188, 1526, 1625
GlaI GCGC 1 cut(s) 427
GluI GCNGC 5 cut(s) 79, 82, 1229, 1965, 2172
GsaI CCCAGC 3 cut(s) 342, 1299, 2268
GsuI CTGGAG 1 cut(s) 1005
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 9 cut(s) 78, 228, 657, 982, 1088, 1228, 1664, 1891, 1956
HapII CCGG 6 cut(s) 846, 1311, 1362, 1536, 1565, 1953
HgaI GACGC 2 cut(s) 202, 2150
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 426
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HincII GTYRAC 2 cut(s) 115, 1972
HindII GTYRAC 2 cut(s) 115, 1972
HindIII AAGCTT 1 cut(s) 736
HpaII CCGG 6 cut(s) 846, 1311, 1362, 1536, 1565, 1953
HphI GGTGA 7 cut(s) 14, 163, 202, 625, 982, 1027, 1198
Hpy166II GTNNAC 7 cut(s) 115, 165, 382, 688, 703, 1839, 1972
Hpy188I TCNGA 9 cut(s) 31, 216, 254, 322, 809, 1487, 1695, 1850, 2302
Hpy188III TCNNGA 9 cut(s) 166, 722, 846, 1022, 1355, 1517, 1709, 1820, 1910
Hpy8I GTNNAC 7 cut(s) 115, 165, 382, 688, 703, 1839, 1972
Hpy99I CGWCG 2 cut(s) 2057, 2060
HpyAV CCTTC 8 cut(s) 319, 358, 760, 1160, 1208, 1748, 2204, 2305
HpyCH4III ACNGT 4 cut(s) 190, 202, 1140, 1855
HpyCH4IV ACGT 4 cut(s) 300, 1008, 1143, 2034
HpyCH4V TGCA 6 cut(s) 107, 1031, 1453, 1474, 1994, 2024
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 344, 868, 1637, 2281, 2290
HpySE526I ACGT 4 cut(s) 300, 1008, 1143, 2034
Hsp92I GRCGYC 1 cut(s) 426
HspAI GCGC 1 cut(s) 426
KasI GGCGCC 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 1816
KspI CCGCGG 1 cut(s) 82
LmnI GCTCC 6 cut(s) 328, 534, 631, 1687, 1740, 1830
Lsp1109I GCAGC 1 cut(s) 1976
LweI GCATC 7 cut(s) 94, 969, 1440, 1483, 1551, 1738, 2193
MaeI CTAG 6 cut(s) 827, 927, 1115, 1188, 1526, 1625
MaeII ACGT 4 cut(s) 300, 1008, 1143, 2034
MfeI CAATTG 1 cut(s) 2019
MflI RGATCY 4 cut(s) 283, 718, 1184, 1912
MhlI GDGCHC 6 cut(s) 298, 450, 873, 1737, 1827, 1863
MlsI TGGCCA 3 cut(s) 657, 982, 1664
MluCI AATT 9 cut(s) 520, 731, 896, 920, 995, 1241, 1704, 2019, 2236
MluNI TGGCCA 3 cut(s) 657, 982, 1664
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 6 cut(s) 41, 570, 928, 1240, 1352, 2334
MmeI TCCRAC 2 cut(s) 184, 1315
Mox20I TGGCCA 3 cut(s) 657, 982, 1664
MroI TCCGGA 1 cut(s) 845
MroXI GAANNNNTTC 2 cut(s) 855, 1573
MscI TGGCCA 3 cut(s) 657, 982, 1664
MslI CAYNNNNRTG 2 cut(s) 188, 1043
Msp20I TGGCCA 3 cut(s) 657, 982, 1664
MspA1I CMGCKG 4 cut(s) 81, 1231, 1299, 1640
MspI CCGG 6 cut(s) 846, 1311, 1362, 1536, 1565, 1953
MspR9I CCNGG 4 cut(s) 823, 1566, 1885, 2307
MunI CAATTG 1 cut(s) 2019
Mva1269I GAATGC 1 cut(s) 1309
MvaI CCWGG 3 cut(s) 823, 1885, 2307
MvnI CGCG 2 cut(s) 81, 1518
MwoI GCNNNNNNNGC 6 cut(s) 78, 344, 868, 1637, 2281, 2290
NarI GGCGCC 1 cut(s) 426
NciI CCSGG 1 cut(s) 1566
NcoI CCATGG 2 cut(s) 64, 813
NlaIV GGNNCC 8 cut(s) 427, 530, 720, 819, 1002, 1674, 1736, 2049
NmuCI GTSAC 7 cut(s) 88, 133, 151, 190, 970, 1765, 1945
NruI TCGCGA 1 cut(s) 1518
NspI RCATGY 1 cut(s) 335
PceI AGGCCT 1 cut(s) 228
PctI GAATGC 1 cut(s) 1309
PdmI GAANNNNTTC 2 cut(s) 855, 1573
PfeI GAWTC 7 cut(s) 240, 725, 1025, 1520, 1617, 1796, 2251
Pfl23II CGTACG 2 cut(s) 1140, 2175
PflFI GACNNNGTC 1 cut(s) 2159
PinAI ACCGGT 1 cut(s) 1310
PkrI GCNGC 5 cut(s) 80, 83, 1230, 1966, 2173
PleI GAGTC 6 cut(s) 40, 569, 928, 1240, 1352, 2333
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 6 cut(s) 40, 569, 928, 1240, 1352, 2333
Ppu21I YACGTR 1 cut(s) 1144
PpuMI RGGWCCY 2 cut(s) 1672, 2047
PshBI ATTAAT 1 cut(s) 1503
Psp124BI GAGCTC 1 cut(s) 1827
Psp1406I AACGTT 1 cut(s) 2034
Psp5II RGGWCCY 2 cut(s) 1672, 2047
Psp6I CCWGG 3 cut(s) 821, 1883, 2305
PspEI GGTNACC 1 cut(s) 1364
PspFI CCCAGC 3 cut(s) 338, 1295, 2264
PspGI CCWGG 3 cut(s) 821, 1883, 2305
PspLI CGTACG 2 cut(s) 1140, 2175
PspN4I GGNNCC 8 cut(s) 427, 530, 720, 819, 1002, 1674, 1736, 2049
PspPI GGNCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
PspPPI RGGWCCY 2 cut(s) 1672, 2047
PstNI CAGNNNCTG 2 cut(s) 1028, 2306
PsuI RGATCY 4 cut(s) 283, 718, 1184, 1912
PsyI GACNNNGTC 1 cut(s) 2159
PvuII CAGCTG 1 cut(s) 1299
RruI TCGCGA 1 cut(s) 1518
RsaI GTAC 6 cut(s) 507, 1142, 1171, 1809, 2120, 2177
RsaNI GTAC 6 cut(s) 506, 1141, 1170, 1808, 2119, 2176
RseI CAYNNNNRTG 2 cut(s) 188, 1043
SacI GAGCTC 1 cut(s) 1827
SacII CCGCGG 1 cut(s) 82
SalI GTCGAC 1 cut(s) 113
SatI GCNGC 5 cut(s) 79, 82, 1229, 1965, 2172
Sau96I GGNCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
SchI GAGTC 6 cut(s) 41, 570, 928, 1240, 1352, 2334
ScrFI CCNGG 4 cut(s) 823, 1566, 1885, 2307
SduI GDGCHC 6 cut(s) 298, 450, 873, 1737, 1827, 1863
SfaNI GCATC 7 cut(s) 94, 969, 1440, 1483, 1551, 1738, 2193
SfcI CTRYAG 1 cut(s) 837
SfoI GGCGCC 1 cut(s) 427
Sfr303I CCGCGG 1 cut(s) 82
SgrAI CRCCGGYG 1 cut(s) 1310
SgrBI CCGCGG 1 cut(s) 82
SinI GGWCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
SmiMI CAYNNNNRTG 2 cut(s) 188, 1043
SmlI CTYRAG 2 cut(s) 467, 1908
SmoI CTYRAG 2 cut(s) 467, 1908
SpeI ACTAGT 1 cut(s) 1525
Sse9I AATT 9 cut(s) 520, 731, 896, 920, 995, 1241, 1704, 2019, 2236
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 8 cut(s) 79, 81, 862, 941, 1229, 1253, 1638, 2171
SspDI GGCGCC 1 cut(s) 425
SspI AATATT 1 cut(s) 1574
SspMI CTAG 6 cut(s) 827, 927, 1115, 1188, 1526, 1625
SstI GAGCTC 1 cut(s) 1827
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 821, 1564, 1883, 2305
StyI CCWWGG 3 cut(s) 64, 658, 813
TaaI ACNGT 4 cut(s) 190, 202, 1140, 1855
TaiI ACGT 4 cut(s) 303, 1011, 1146, 2037
TaqI TCGA 8 cut(s) 114, 243, 1164, 1249, 1465, 1620, 1920, 2254
TasI AATT 9 cut(s) 520, 731, 896, 920, 995, 1241, 1704, 2019, 2236
TatI WGTACW 3 cut(s) 505, 1807, 2118
TauI GCSGC 4 cut(s) 81, 84, 1231, 2174
TfiI GAWTC 7 cut(s) 240, 725, 1025, 1520, 1617, 1796, 2251
TscAI CASTG 7 cut(s) 79, 114, 990, 1263, 1280, 1391, 1638
TseFI GTSAC 7 cut(s) 88, 133, 151, 190, 970, 1765, 1945
TseI GCWGC 1 cut(s) 1964
Tsp45I GTSAC 7 cut(s) 88, 133, 151, 190, 970, 1765, 1945
TspDTI ATGAA 6 cut(s) 268, 513, 779, 899, 1893, 2127
TspGWI ACGGA 7 cut(s) 107, 170, 989, 1278, 1784, 1878, 2057
TspRI CASTG 7 cut(s) 79, 114, 990, 1263, 1280, 1391, 1638
Tth111I GACNNNGTC 1 cut(s) 2159
VpaK11BI GGWCC 6 cut(s) 500, 1000, 1016, 1672, 2028, 2047
VspI ATTAAT 1 cut(s) 1503
XapI RAATTY 2 cut(s) 896, 920
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 2 cut(s) 71, 145
XmiI GTMKAC 4 cut(s) 114, 381, 687, 702
XmnI GAANNNNTTC 2 cut(s) 855, 1573
XspI CTAG 6 cut(s) 827, 927, 1115, 1188, 1526, 1625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.