Rmu_sc0009311.1_g000005

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009311.1
Physical Location & Seq
Reverse (-)
36433 .. 37188
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009311.1_g000005.1.cds

Sequence Viewer

Length: 756 bp
atggcagttgaggatccgacagctgagcatggtgtgaggttaacaattgaagactacccatttgcaaatgatggtctcattctgtgggatgccattaaggagtgggtgggtgactatgtgaatcactattatccagacccaactcttgttgaatctgataatgagcttcaagcttggtggacagaagttagaaccaaaggccatgcagacaaaaaagatgaatcctggtggcctgttttgaaaaccccggaagatctcattcataccttgacaactataatttgggttacagctggacatcatgctgcagtgaactttggtcagtacatgtatgccggatacttcccgaaccggcctacaatagctcgaagcaacatgccaactgaagatccaaacgatgatcttttcaagatatttttgaagaaaccagaagctgcattgctgaggtgcttcccctcacagattcaagcaacaaaagtgatggctgtcttagatgtattatcgaaccattcacccgatgaggagtacattggtgggaatgtggagtcatcttgggctgaaaacccggtgataaatgcagctttcgagaggttcaatggcaatttgaagaagctagaaggaattattgatgagaggaacaccaatatgaagctgaaaaacagagttggagcaggggttgttccatatgagcttttgaagccattctcagaatcaggggtcacaggaatgggagttcccaacagcatctccatctaa

Protein Analysis

251

Amino Acids

28.28

Weight (kDa)

4.88

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 8, 21, 383
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 2 cut(s) 326, 527
AflIII ACRYGT 1 cut(s) 327
AjnI CCWGG 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 717, 749
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 3 cut(s) 8, 21, 383
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 3 cut(s) 199, 230, 353
ApeKI GCWGC 3 cut(s) 305, 434, 578
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 701
AsuC2I CCSGG 2 cut(s) 248, 566
AsuHPI GGTGA 3 cut(s) 122, 504, 580
BamHI GGATCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 292, 421, 590
BccI CCATC 2 cut(s) 65, 475
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 332
BcnI CCSGG 2 cut(s) 248, 566
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 306
BfuI GTATCC 1 cut(s) 332
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 306, 435, 579
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 3 cut(s) 307, 436, 580
Bme1390I CCNGG 3 cut(s) 226, 248, 566
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 3 cut(s) 226, 248, 566
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 24
BpuMI CCSGG 2 cut(s) 248, 566
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 3 cut(s) 660, 690, 731
Bse118I RCCGGY 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 15, 434, 720
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 292, 421, 590
BshFI GGCC 3 cut(s) 201, 232, 355
BsiSI CCGG 4 cut(s) 248, 336, 352, 566
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 3 cut(s) 201, 232, 355
Bso31I GGTCTC 1 cut(s) 80
Bsp143I GATC 4 cut(s) 13, 253, 388, 400
Bsp1720I GCTNAGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 201, 232, 355
BspCNI CTCAG 3 cut(s) 16, 435, 719
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 3 cut(s) 8, 21, 383
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 4 cut(s) 13, 253, 388, 400
Bst2UI CCWGG 1 cut(s) 226
BstDEI CTNAG 4 cut(s) 24, 443, 490, 706
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 4 cut(s) 16, 256, 391, 403
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 4 cut(s) 13, 253, 388, 400
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 331, 379
BstSCI CCNGG 3 cut(s) 224, 246, 564
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 292, 421, 590
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 3 cut(s) 13, 253, 388
BstYI RGATCY 3 cut(s) 13, 253, 388
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 3 cut(s) 201, 232, 355
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
CaiI CAGNNNCTG 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 351
Csp6I GTAC 2 cut(s) 325, 526
CspCI CAANNNNNGTGG 2 cut(s) 158, 193
CviAII CATG 5 cut(s) 29, 203, 302, 328, 376
CviQI GTAC 2 cut(s) 325, 526
DdeI CTNAG 4 cut(s) 24, 443, 490, 706
DpnI GATC 4 cut(s) 15, 255, 390, 402
DpnII GATC 4 cut(s) 13, 253, 388, 400
Eco31I GGTCTC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 5 cut(s) 32, 206, 305, 331, 379
FatI CATG 5 cut(s) 28, 202, 301, 327, 375
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 306, 435, 579
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 306, 435, 579
FspBI CTAG 1 cut(s) 614
GluI GCNGC 3 cut(s) 306, 435, 579
HaeIII GGCC 3 cut(s) 201, 232, 355
HapII CCGG 4 cut(s) 248, 336, 352, 566
Hin1II CATG 5 cut(s) 32, 206, 305, 331, 379
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 6 cut(s) 121, 152, 221, 463, 545, 710
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 4 cut(s) 248, 336, 352, 566
HphI GGTGA 3 cut(s) 122, 504, 580
Hpy166II GTNNAC 3 cut(s) 42, 180, 313
Hpy188I TCNGA 3 cut(s) 18, 157, 709
Hpy188III TCNNGA 4 cut(s) 134, 346, 409, 586
Hpy8I GTNNAC 3 cut(s) 42, 180, 313
HpyAV CCTTC 1 cut(s) 611
HpyCH4V TGCA 5 cut(s) 65, 206, 308, 437, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 4 cut(s) 24, 443, 490, 706
Hsp92II CATG 5 cut(s) 32, 206, 305, 331, 379
KspAI GTTAAC 1 cut(s) 42
Kzo9I GATC 4 cut(s) 13, 253, 388, 400
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 3 cut(s) 292, 421, 590
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 614
MaeIII GTNAC 3 cut(s) 110, 286, 718
MalI GATC 4 cut(s) 15, 255, 390, 402
MboI GATC 4 cut(s) 13, 253, 388, 400
MboII GAAGA 5 cut(s) 62, 263, 398, 433, 619
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 3 cut(s) 13, 253, 388
MluCI AATT 4 cut(s) 45, 279, 601, 621
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 41, 646
MnlI CCTC 7 cut(s) 4, 30, 438, 466, 514, 582, 627
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 2 cut(s) 41, 96
MslI CAYNNNNRTG 2 cut(s) 644, 725
MspA1I CMGCKG 2 cut(s) 23, 293
MspI CCGG 4 cut(s) 248, 336, 352, 566
MspR9I CCNGG 3 cut(s) 226, 248, 566
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 697
NciI CCSGG 2 cut(s) 248, 566
NdeI CATATG 1 cut(s) 685
NdeII GATC 4 cut(s) 13, 253, 388, 400
NlaIII CATG 5 cut(s) 32, 206, 305, 331, 379
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 2 cut(s) 110, 718
NspI RCATGY 2 cut(s) 331, 379
PciI ACATGT 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 5 cut(s) 121, 152, 221, 463, 710
PkrI GCNGC 3 cut(s) 307, 436, 580
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PscI ACATGT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 15
PstI CTGCAG 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 13, 253, 388
PvuII CAGCTG 2 cut(s) 23, 293
RsaI GTAC 2 cut(s) 326, 527
RsaNI GTAC 2 cut(s) 325, 526
RseI CAYNNNNRTG 2 cut(s) 644, 725
SaqAI TTAA 2 cut(s) 41, 96
SatI GCNGC 3 cut(s) 306, 435, 579
Sau3AI GATC 4 cut(s) 13, 253, 388, 400
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 3 cut(s) 226, 248, 566
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 644, 725
Sse9I AATT 4 cut(s) 45, 279, 601, 621
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 224, 246, 564
TaqI TCGA 3 cut(s) 367, 503, 585
TasI AATT 4 cut(s) 45, 279, 601, 621
TatI WGTACW 2 cut(s) 324, 525
TfiI GAWTC 5 cut(s) 121, 152, 221, 463, 710
Tru1I TTAA 2 cut(s) 41, 96
Tru9I TTAA 2 cut(s) 41, 96
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 110, 718
TseI GCWGC 3 cut(s) 305, 434, 578
Tsp45I GTSAC 2 cut(s) 110, 718
TspDTI ATGAA 3 cut(s) 234, 251, 662
TspRI CASTG 1 cut(s) 315
XceI RCATGY 2 cut(s) 331, 379
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.