Rh6CG284200

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
46201154 .. 46202695
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG284200.1

Sequence Viewer

Length: 1056 bp
ATGCAATTCGTTTTTACAATAGAGACTGGGTTGGAGAAAAAAACAATAAAAGGGTATGCACACAAAGTGAATCAAAAAGAGACGATCGTCACGTATGAGAGTGTGCTGACGATCCCAGTGGGTTTCGGGGATATCAGAGCGGTTCAGGTTGAGAATGAGCACCACGAGGAGGCTTACATCAAGAGTATCGAGATCTCTGGCTTCCCAAATGGCACCTCTGTTAGTGTTCCATGTAATTCATGGACTCATTCCAAGTATGACAATAACCAGAAGAGAATCTTTTTCACCAACAAGTCTTACTTACCATCAGAGACACCAAGTGGGATCAAGAGGCTAAGAGAAGAGGAGCTGCAACTTCTGCGAGGAAATGGCGAGGGTGAAAGGAAAGCATCTGAAGGGATTTATGATTATGATACATACAATGATCTAGGAGACCCAAATAGCAAAGACAAGTTGGCTAGGCCTGTCCTTGGTGGCAAAGACCACCCGTACCCTAGGCGCTGCAGAACTGGACGACCACGCACTAAAAAGGATCCATTATCAGAGGAAAGAAGCAGCAGCGTGTATGTGCCAAGAGATGAAGCGTTTTCAGAGTTGAAACAGCTCACATTCTCTGCAAAGACCCTGAAATCTGTGCTGCATGCATTGCTTCCTCAACTTGAGATAACACTTGTTGATCCAGAGCTAGGATTTCCCTACTTCACAGCCATAGATTCATTGTTCAATGAAGGAGTCACATTGCCTAAGCCAAAAGCTAGTGGCTTTATTCAGTCAATCATCCCAAGGCTAGTCAAGGCAATTAGCGATGGACAAGATGATCTCTTGCTCTTTGAGACCCCTGAAATACTTGATCGTGATAAATTTTCTTGGTTCAAAGATGAAGAATTTTCTAGGCAAACTCTAGTTGGTCTTAATCCATATAGCATAGAGCTAGTTACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCAGCTGAATCATTGATCACCACAAAACTGGTGGAGAAGGAAATCAGAGGCTTTATGACTGTCAATGAGGTATAG

Protein Analysis

351

Amino Acids

39.86

Weight (kDa)

5.6

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 24 - 95 8.6e-07 PLAT/LH2 domain
Lipoxygenase PF00305 108 - 350 2.8e-87 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 140
AciI CCGC 1 cut(s) 140
AclWI GGATC 5 cut(s) 106, 332, 527, 540, 671
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 2 cut(s) 860, 884
AcuI CTGAAG 1 cut(s) 414
AdeI CACNNNGTG 2 cut(s) 67, 320
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 3 cut(s) 169, 470, 686
AgsI TTSAA 4 cut(s) 598, 724, 874, 952
AluBI AGCT 6 cut(s) 349, 604, 685, 755, 931, 986
AluI AGCT 6 cut(s) 349, 604, 685, 755, 931, 986
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 5 cut(s) 17, 74, 305, 426, 827
AlwI GGATC 5 cut(s) 106, 332, 527, 540, 671
Ama87I CYCGRG 1 cut(s) 968
AoxI GGCC 3 cut(s) 461, 944, 979
ApeKI GCWGC 5 cut(s) 349, 501, 555, 558, 637
ApoI RAATTY 2 cut(s) 860, 884
AspA2I CCTAGG 1 cut(s) 494
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 980
AsuHPI GGTGA 3 cut(s) 277, 389, 991
AvaI CYCGRG 1 cut(s) 968
AvrII CCTAGG 1 cut(s) 494
BalI TGGCCA 1 cut(s) 946
BamHI GGATCC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 212
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 5 cut(s) 336, 488, 567, 570, 624
BccI CCATC 2 cut(s) 313, 800
BclI TGATCA 1 cut(s) 996
BcoDI GTCTC 5 cut(s) 17, 74, 305, 426, 827
BfaI CTAG 9 cut(s) 428, 459, 495, 686, 756, 788, 891, 902, 932
BfmI CTRYAG 1 cut(s) 502
BfoI RGCGCY 1 cut(s) 502
BglII AGATCT 1 cut(s) 192
BisI GCNGC 5 cut(s) 350, 502, 556, 559, 638
BlnI CCTAGG 1 cut(s) 494
BlsI GCNGC 5 cut(s) 351, 503, 557, 560, 639
BmeT110I CYCGRG 1 cut(s) 968
BmgT120I GGNCC 1 cut(s) 980
BmiI GGNNCC 2 cut(s) 214, 534
BmrI ACTGGG 2 cut(s) 36, 110
BmsI GCATC 1 cut(s) 398
BmuI ACTGGG 2 cut(s) 36, 110
BoxI GACNNNNGTC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 680
BsaAI YACGTR 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 426, 827
BsaJI CCNNGG 3 cut(s) 469, 494, 782
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 470, 686
Bse1I ACTGG 4 cut(s) 31, 116, 514, 1014
Bse3DI GCAATG 2 cut(s) 644, 737
BseDI CCNNGG 3 cut(s) 469, 494, 782
BseGI GGATG 1 cut(s) 777
BseLI CCNNNNNNNGG 3 cut(s) 169, 470, 686
BseMI GCAATG 2 cut(s) 644, 737
BseNI ACTGG 4 cut(s) 31, 116, 514, 1014
BseRI GAGGAG 2 cut(s) 182, 359
BseXI GCAGC 5 cut(s) 336, 488, 567, 570, 624
BseYI CCCAGC 1 cut(s) 982
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 3 cut(s) 463, 946, 981
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 968
BslI CCNNNNNNNGG 3 cut(s) 169, 470, 686
BsmAI GTCTC 5 cut(s) 17, 74, 305, 426, 827
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 3 cut(s) 463, 946, 981
Bso31I GGTCTC 2 cut(s) 426, 827
BsoBI CYCGRG 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 162
BspACI CCGC 1 cut(s) 140
BspANI GGCC 3 cut(s) 463, 946, 981
BspLI GGNNCC 2 cut(s) 214, 534
BspMAI CTGCAG 1 cut(s) 506
BspPI GGATC 5 cut(s) 106, 332, 527, 540, 671
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 2 cut(s) 426, 827
BsrBI CCGCTC 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 644, 737
BsrI ACTGG 4 cut(s) 31, 116, 514, 1014
BssECI CCNNGG 3 cut(s) 469, 494, 782
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 3 cut(s) 469, 494, 782
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 1042
Bst6I CTCTTC 2 cut(s) 266, 336
BstAPI GCANNNNNTGC 2 cut(s) 358, 646
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 642
BstDEI CTNAG 2 cut(s) 335, 744
BstF5I GGATG 1 cut(s) 777
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstMAI GTCTC 5 cut(s) 17, 74, 305, 426, 827
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 358, 646
BstNSI RCATGY 1 cut(s) 644
BstPAI GACNNNNGTC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 502
BstV1I GCAGC 5 cut(s) 336, 488, 567, 570, 624
BstX2I RGATCY 2 cut(s) 192, 532
BstXI CCANNNNNNTGG 1 cut(s) 1009
BstYI RGATCY 2 cut(s) 192, 532
BsuRI GGCC 3 cut(s) 463, 946, 981
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 642
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 980
Csp6I GTAC 1 cut(s) 490
CspCI CAANNNNNGTGG 2 cut(s) 993, 1028
CviAII CATG 3 cut(s) 231, 240, 641
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 335, 744
DraIII CACNNNGTG 2 cut(s) 67, 320
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 2 cut(s) 266, 336
EarI CTCTTC 2 cut(s) 266, 336
Eco130I CCWWGG 3 cut(s) 469, 494, 782
Eco147I AGGCCT 1 cut(s) 463
Eco31I GGTCTC 2 cut(s) 426, 827
Eco32I GATATC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 968
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 3 cut(s) 469, 494, 782
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 3 cut(s) 469, 494, 782
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 3 cut(s) 234, 243, 644
FalI AAGNNNNNCTT 4 cut(s) 263, 295, 284, 316
FatI CATG 3 cut(s) 230, 239, 640
FbaI TGATCA 1 cut(s) 996
Fnu4HI GCNGC 5 cut(s) 350, 502, 556, 559, 638
FokI GGATG 1 cut(s) 764
Fsp4HI GCNGC 5 cut(s) 350, 502, 556, 559, 638
FspBI CTAG 9 cut(s) 428, 459, 495, 686, 756, 788, 891, 902, 932
GlaI GCGC 1 cut(s) 500
GluI GCNGC 5 cut(s) 350, 502, 556, 559, 638
GsaI CCCAGC 1 cut(s) 986
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 3 cut(s) 463, 946, 981
HhaI GCGC 1 cut(s) 501
Hin1II CATG 3 cut(s) 234, 243, 644
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HinfI GANTC 6 cut(s) 70, 244, 276, 713, 732, 989
HphI GGTGA 3 cut(s) 277, 389, 991
Hpy166II GTNNAC 1 cut(s) 959
Hpy188I TCNGA 6 cut(s) 137, 310, 394, 544, 592, 1028
Hpy188III TCNNGA 5 cut(s) 181, 190, 328, 680, 854
Hpy8I GTNNAC 1 cut(s) 959
HpyAV CCTTC 3 cut(s) 389, 722, 1012
HpyCH4III ACNGT 1 cut(s) 1042
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 7 cut(s) 4, 59, 352, 504, 617, 640, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 646
HpyF3I CTNAG 2 cut(s) 335, 744
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 3 cut(s) 234, 243, 644
HspAI GCGC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 996
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 5 cut(s) 336, 488, 567, 570, 624
LweI GCATC 1 cut(s) 398
MaeI CTAG 9 cut(s) 428, 459, 495, 686, 756, 788, 891, 902, 932
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 3 cut(s) 88, 733, 934
MbiI CCGCTC 1 cut(s) 140
MboII GAAGA 3 cut(s) 283, 353, 893
MflI RGATCY 2 cut(s) 192, 532
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 946
MluCI AATT 5 cut(s) 5, 235, 798, 860, 884
MluNI TGGCCA 1 cut(s) 946
MlyI GAGTC 2 cut(s) 238, 741
MmeI TCCRAC 1 cut(s) 12
Mox20I TGGCCA 1 cut(s) 946
Mph1103I ATGCAT 1 cut(s) 646
MscI TGGCCA 1 cut(s) 946
MseI TTAA 1 cut(s) 912
Msp20I TGGCCA 1 cut(s) 946
MspA1I CMGCKG 1 cut(s) 986
MwoI GCNNNNNNNGC 2 cut(s) 358, 646
NlaIII CATG 3 cut(s) 234, 243, 644
NlaIV GGNNCC 2 cut(s) 214, 534
NmuCI GTSAC 2 cut(s) 88, 733
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 644
PaeI GCATGC 1 cut(s) 644
PceI AGGCCT 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PfeI GAWTC 4 cut(s) 70, 276, 713, 989
PkrI GCNGC 5 cut(s) 351, 503, 557, 560, 639
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 2 cut(s) 238, 740
PpsI GAGTC 2 cut(s) 238, 740
Ppu21I YACGTR 1 cut(s) 93
PshAI GACNNNNGTC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 982
PspN4I GGNNCC 2 cut(s) 214, 534
PspPI GGNCC 1 cut(s) 980
PstI CTGCAG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 192, 532
PvuI CGATCG 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SaqAI TTAA 1 cut(s) 912
SatI GCNGC 5 cut(s) 350, 502, 556, 559, 638
Sau96I GGNCC 1 cut(s) 980
SchI GAGTC 2 cut(s) 238, 741
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SphI GCATGC 1 cut(s) 644
Sse9I AATT 5 cut(s) 5, 235, 798, 860, 884
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 1 cut(s) 140
SspMI CTAG 9 cut(s) 428, 459, 495, 686, 756, 788, 891, 902, 932
StuI AGGCCT 1 cut(s) 463
StyI CCWWGG 3 cut(s) 469, 494, 782
TaaI ACNGT 1 cut(s) 1042
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 189
TasI AATT 5 cut(s) 5, 235, 798, 860, 884
TfiI GAWTC 4 cut(s) 70, 276, 713, 989
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 2 cut(s) 88, 733
TseI GCWGC 5 cut(s) 349, 501, 555, 558, 637
Tsp45I GTSAC 2 cut(s) 88, 733
TspDTI ATGAA 5 cut(s) 228, 594, 705, 741, 894
TspGWI ACGGA 1 cut(s) 953
TspRI CASTG 1 cut(s) 123
XapI RAATTY 2 cut(s) 860, 884
XceI RCATGY 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 2 cut(s) 237, 1009
XmaJI CCTAGG 1 cut(s) 494
XspI CTAG 9 cut(s) 428, 459, 495, 686, 756, 788, 891, 902, 932
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.