Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Forward (+)

35162229 .. 35168805

Gene Structure 6577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGACGATCAACTCTCTGCTGCAAAAGCCAACCTCCTCCTCCTCTTTGCCCATAACAAACACAAAAAATAGCATTCTTGCCGCGTCCGTTGAGGTTGAAGAAGCTGAAGCAGCACTGATGAATACTAGTATTTCATCAGCAGAGAATAATAACAATAATGAGGCAGTTACGGTGAAGGCAGTGGTTACAGTGAAAATAACAACGGGAAGCCTGTTCTCCAACTTGTTTGGTTTGACAGCACCCCTCGATCTTTTCACTGATTTGCTCGGAAAAACCTTTCTTCTTGAGCTTGTTAGCACCGAGCTTGACCCTGGTACCATCGATATTGGGTTGGAGAAGAAAACAATCCAGGGATATGCGCACAAAGTGACCAGAATTGACGATGAGGTGAAGTATGAAAGCTCCTTCACCCTCCCAGCGGGTTTCGGAGAGTCTTACTTACCATCAGAAACACCAAGTGGGTTGAAGAGGCTAAGAGAACTGGAGCTGCAACATTTGCGAGGAAATGGGGAGGGTGAAAGAAAAACGTCCGACAGAATTTATGATTATGATGCATACAATGATCTTGGAAATCCTGATAGCGAAGATGATTTGGCCAGGCCCGTGCTTGGCGGCAAAGAGCATCCATACCCGAGGCGCTGCAGAACAGGACGACCACGCACCAAAAAGGATCCATTATCAGAGGAAAGAAGCAGCAGTGTGTATGTACCAAGAGATGAAGCTTTCGCAGAGGAGTCACAATGCCCCAAGCCAAAAACTAGTGGGCTTTTTCAGTCCGTCATCCCAAGGCTAGTGAAGGCTGTTAGTGACAGCCAAGATGATCTTTTGCTCTTTGAGACCCCTGAAATAATCGATCGTGATAAATTTTCCTGGTTTAGAGATGAAGAATTTTCCCGGCAAACTCTAGCTGGTCTTAATCCATTTAGTATAGAGCTAGTCAAGGAGTGGCCATTGAAAAGTAAACTGGACCCCAAAAATTTATGGTCCACCGGAATCATTGATCACAACAGAACTTGTGGAGAAAGAAATCCGAGGACACTGTTCTTCCTCACTGAAGAAGGCACATTGAGGCTTGTTGCCATTGAACTAACTCGCCCACCTGTTGGTGACAAGCCACAATGGAAGCAAGTGTTTACTCCTACATGGGATGCCACTGGATGCTGGCTATGGAGACTCGCTAAAGCGCATGTTTGTGCTCATGATGCTGGCTATCATCAGCTTGTCATCCACTGGCTGAGAACTCATTGTTGTACGGAGCCATACATAATTGCCGCCAATCGCCAATTAAGTGCAATGCATCCCATCTATAGACTTCTACTTCCTCATTTTCGGTACACAATGGAAATCAATGCCCTGGCTCGGGAAAGCCTCATCAATGCAGGTGGAATCATTGAGACCTCCTTCTCACCGGCAAAGTACTCCATTGAGCTCAGTTCAGCTGCTTATGACAAGTTCTGGCGCTTTGACACGGAAGCTTTGCCAGCAGATTTGATCAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

500

Amino Acids

56.34

Weight (kDa)

5.69

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	154 - 268	2.9e-40	Lipoxygenase
Lipoxygenase	PF00305	258 - 326	8.4e-20	Lipoxygenase
Lipoxygenase	PF00305	344 - 500	1.3e-84	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1370
Acc16I	TGCGCA	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	1370
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	1103
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	81, 419, 612, 1272
AclWI	GGATC	2 cut(s)	665, 678
AcoI	YGGCCR	2 cut(s)	594, 947
AcsI	RAATTY	4 cut(s)	537, 863, 887, 976
AcuI	CTGAAG	2 cut(s)	126, 1074
AdeI	CACNNNGTG	2 cut(s)	367, 458
AfaI	GTAC	5 cut(s)	316, 708, 1252, 1334, 1418
AfiI	CCNNNNNNNGG	5 cut(s)	418, 608, 1103, 1359, 1360
AgsI	TTSAA	4 cut(s)	98, 466, 955, 1085
AhlI	ACTAGT	2 cut(s)	125, 758
AjnI	CCWGG	5 cut(s)	310, 348, 596, 869, 1353
Alw21I	GWGCWC	2 cut(s)	1198, 1431
Alw26I	GTCTC	3 cut(s)	830, 1165, 1388
AlwI	GGATC	2 cut(s)	665, 678
Ama87I	CYCGRG	2 cut(s)	631, 1359
AoxI	GGCC	3 cut(s)	594, 599, 947
ApeKI	GCWGC	6 cut(s)	19, 110, 487, 639, 693, 1439
ApoI	RAATTY	4 cut(s)	537, 863, 887, 976
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	4 cut(s)	361, 639, 1186, 1461
AspS9I	GGNCC	3 cut(s)	600, 967, 984
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	6 cut(s)	184, 400, 400, 527, 1118, 1398
AvaI	CYCGRG	2 cut(s)	631, 1359
AvaII	GGWCC	2 cut(s)	967, 984
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BalI	TGGCCA	2 cut(s)	596, 949
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	1431
Bbv12I	GWGCWC	2 cut(s)	1198, 1431
BbvI	GCAGC	6 cut(s)	6, 122, 474, 626, 705, 1426
BccI	CCATC	3 cut(s)	326, 451, 1310
BciT130I	CCWGG	5 cut(s)	312, 350, 598, 871, 1355
BclI	TGATCA	2 cut(s)	1000, 1491
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	3 cut(s)	830, 1165, 1388
BcuI	ACTAGT	2 cut(s)	125, 758
BfaI	CTAG	5 cut(s)	126, 759, 791, 905, 935
BfmI	CTRYAG	2 cut(s)	640, 1306
BfoI	RGCGCY	2 cut(s)	640, 1462
BfuAI	ACCTGC	1 cut(s)	1370
BisI	GCNGC	9 cut(s)	20, 81, 111, 488, 613, 640, 694, 1272, 1440
BlsI	GCNGC	9 cut(s)	21, 82, 112, 489, 614, 641, 695, 1273, 1441
BmcAI	AGTACT	1 cut(s)	1418
Bme1390I	CCNGG	6 cut(s)	312, 350, 598, 871, 895, 1355
Bme18I	GGWCC	2 cut(s)	967, 984
BmeT110I	CYCGRG	2 cut(s)	631, 1359
BmgT120I	GGNCC	3 cut(s)	600, 967, 984
BmiI	GGNNCC	4 cut(s)	316, 672, 969, 1257
BmrFI	CCNGG	6 cut(s)	312, 350, 598, 871, 895, 1355
BmsI	GCATC	6 cut(s)	541, 631, 1138, 1148, 1192, 1306
BpmI	CTGGAG	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	895
Bsa29I	ATCGAT	2 cut(s)	321, 852
BsaI	GGTCTC	2 cut(s)	830, 1388
BsaJI	CCNNGG	6 cut(s)	310, 349, 632, 785, 1031, 1353
BsaWI	WCCGGW	1 cut(s)	989
Bsc4I	CCNNNNNNNGG	5 cut(s)	418, 608, 1103, 1359, 1360
Bse118I	RCCGGY	1 cut(s)	1408
Bse1I	ACTGG	4 cut(s)	486, 969, 1159, 1235
Bse3DI	GCAATG	1 cut(s)	1299
BseBI	CCWGG	5 cut(s)	312, 350, 598, 871, 1355
BseCI	ATCGAT	2 cut(s)	321, 852
BseDI	CCNNGG	6 cut(s)	310, 349, 632, 785, 1031, 1353
BseGI	GGATG	6 cut(s)	622, 780, 1153, 1163, 1224, 1297
BseLI	CCNNNNNNNGG	5 cut(s)	418, 608, 1103, 1359, 1360
BseMI	GCAATG	1 cut(s)	1299
BseMII	CTCAG	2 cut(s)	1226, 1444
BseNI	ACTGG	4 cut(s)	486, 969, 1159, 1235
BseRI	GAGGAG	4 cut(s)	25, 28, 31, 746
BseXI	GCAGC	6 cut(s)	6, 122, 474, 626, 705, 1426
BseYI	CCCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	3 cut(s)	596, 601, 949
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	2 cut(s)	321, 852
BsiEI	CGRYCG	1 cut(s)	856
BsiHKAI	GWGCWC	2 cut(s)	1198, 1431
BsiHKCI	CYCGRG	2 cut(s)	631, 1359
BsiSI	CCGG	3 cut(s)	895, 990, 1409
BslI	CCNNNNNNNGG	5 cut(s)	418, 608, 1103, 1359, 1360
BsmAI	GTCTC	3 cut(s)	830, 1165, 1388
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	596, 601, 949
Bso31I	GGTCTC	2 cut(s)	830, 1388
BsoBI	CYCGRG	2 cut(s)	631, 1359
Bsp1286I	GDGCHC	2 cut(s)	1198, 1431
Bsp143I	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
BspACI	CCGC	4 cut(s)	81, 419, 612, 1272
BspANI	GGCC	3 cut(s)	596, 601, 949
BspCNI	CTCAG	2 cut(s)	1227, 1443
BspDI	ATCGAT	2 cut(s)	321, 852
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	1198
BspLI	GGNNCC	4 cut(s)	316, 672, 969, 1257
BspMAI	CTGCAG	1 cut(s)	644
BspMI	ACCTGC	1 cut(s)	1370
BspPI	GGATC	2 cut(s)	665, 678
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	2 cut(s)	830, 1388
BsrDI	GCAATG	1 cut(s)	1299
BsrFI	RCCGGY	1 cut(s)	1408
BsrI	ACTGG	4 cut(s)	486, 969, 1159, 1235
BssAI	RCCGGY	1 cut(s)	1408
BssECI	CCNNGG	6 cut(s)	310, 349, 632, 785, 1031, 1353
BssMI	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
BssT1I	CCWWGG	1 cut(s)	785
Bst2UI	CCWGG	5 cut(s)	312, 350, 598, 871, 1355
Bst4CI	ACNGT	3 cut(s)	172, 190, 1041
Bst6I	CTCTTC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	1163, 1207, 1482
BstDEI	CTNAG	3 cut(s)	473, 1235, 1430
BstF5I	GGATG	6 cut(s)	622, 780, 1153, 1163, 1224, 1297
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	2 cut(s)	640, 1462
BstHHI	GCGC	4 cut(s)	361, 639, 1186, 1461
BstKTI	GATC	8 cut(s)	9, 250, 565, 673, 823, 856, 1003, 1494
BstMAI	GTCTC	3 cut(s)	830, 1165, 1388
BstMBI	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 110, 496, 1202, 1481
BstNI	CCWGG	5 cut(s)	312, 350, 598, 871, 1355
BstNSI	RCATGY	1 cut(s)	1190
BstSCI	CCNGG	6 cut(s)	310, 348, 596, 869, 893, 1353
BstSFI	CTRYAG	2 cut(s)	640, 1306
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	6 cut(s)	6, 122, 474, 626, 705, 1426
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu15I	ATCGAT	2 cut(s)	321, 852
BsuRI	GGCC	3 cut(s)	596, 601, 949
BsuTUI	ATCGAT	2 cut(s)	321, 852
BtsCI	GGATG	6 cut(s)	622, 780, 1153, 1163, 1224, 1297
BtsI	GCAGTG	2 cut(s)	186, 703
BtsIMutI	CAGTG	9 cut(s)	113, 186, 195, 255, 703, 1037, 1050, 1152, 1228
BveI	ACCTGC	1 cut(s)	1370
Cac8I	GCNNGC	3 cut(s)	1163, 1207, 1482
CciI	TCATGA	1 cut(s)	1198
CfoI	GCGC	4 cut(s)	361, 639, 1186, 1461
Cfr10I	RCCGGY	1 cut(s)	1408
Cfr13I	GGNCC	3 cut(s)	600, 967, 984
ClaI	ATCGAT	2 cut(s)	321, 852
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	5 cut(s)	315, 707, 1251, 1333, 1417
CspCI	CAANNNNNGTGG	2 cut(s)	1363, 1398
CviAII	CATG	3 cut(s)	1143, 1187, 1199
CviQI	GTAC	5 cut(s)	315, 707, 1251, 1333, 1417
DdeI	CTNAG	3 cut(s)	473, 1235, 1430
DpnI	GATC	8 cut(s)	8, 249, 564, 672, 822, 855, 1002, 1493
DpnII	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
DraIII	CACNNNGTG	2 cut(s)	367, 458
EaeI	YGGCCR	2 cut(s)	594, 947
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	1429
Eco130I	CCWWGG	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	1431
Eco31I	GGTCTC	2 cut(s)	830, 1388
Eco47I	GGWCC	2 cut(s)	967, 984
Eco53kI	GAGCTC	1 cut(s)	1429
Eco57I	CTGAAG	2 cut(s)	126, 1074
Eco88I	CYCGRG	2 cut(s)	631, 1359
EcoICRI	GAGCTC	1 cut(s)	1429
EcoRII	CCWGG	5 cut(s)	310, 348, 596, 869, 1353
EcoT14I	CCWWGG	1 cut(s)	785
EcoT22I	ATGCAT	2 cut(s)	556, 1299
EcoT38I	GRGCYC	1 cut(s)	1431
ErhI	CCWWGG	1 cut(s)	785
FaeI	CATG	3 cut(s)	1146, 1190, 1202
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FatI	CATG	3 cut(s)	1142, 1186, 1198
FauI	CCCGC	1 cut(s)	412
FbaI	TGATCA	2 cut(s)	1000, 1491
Fnu4HI	GCNGC	9 cut(s)	20, 81, 111, 488, 613, 640, 694, 1272, 1440
FokI	GGATG	6 cut(s)	609, 767, 1160, 1170, 1211, 1284
FriOI	GRGCYC	1 cut(s)	1431
Fsp4HI	GCNGC	9 cut(s)	20, 81, 111, 488, 613, 640, 694, 1272, 1440
FspAI	RTGCGCAY	1 cut(s)	360
FspBI	CTAG	5 cut(s)	126, 759, 791, 905, 935
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	4 cut(s)	360, 638, 1185, 1460
GluI	GCNGC	9 cut(s)	20, 81, 111, 488, 613, 640, 694, 1272, 1440
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	503
HaeII	RGCGCY	2 cut(s)	640, 1462
HaeIII	GGCC	3 cut(s)	596, 601, 949
HapII	CCGG	3 cut(s)	895, 990, 1409
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	4 cut(s)	361, 639, 1186, 1461
Hin1II	CATG	3 cut(s)	1146, 1190, 1202
Hin6I	GCGC	4 cut(s)	359, 637, 1184, 1459
HinP1I	GCGC	4 cut(s)	359, 637, 1184, 1459
HindIII	AAGCTT	2 cut(s)	720, 1473
HinfI	GANTC	5 cut(s)	431, 734, 993, 1173, 1386
HpaII	CCGG	3 cut(s)	895, 990, 1409
HphI	GGTGA	6 cut(s)	184, 400, 400, 527, 1118, 1398
Hpy166II	GTNNAC	4 cut(s)	962, 987, 1134, 1335
Hpy188I	TCNGA	7 cut(s)	269, 428, 448, 532, 682, 1032, 1496
Hpy188III	TCNNGA	5 cut(s)	284, 575, 857, 1199, 1361
Hpy8I	GTNNAC	4 cut(s)	962, 987, 1134, 1335
HpyAV	CCTTC	6 cut(s)	169, 415, 790, 1052, 1411, 1491
HpyCH4III	ACNGT	3 cut(s)	172, 190, 1041
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	7 cut(s)	22, 490, 554, 642, 1292, 1297, 1379
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 110, 496, 1202, 1481
HpyF3I	CTNAG	3 cut(s)	473, 1235, 1430
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	1146, 1190, 1202
HspAI	GCGC	4 cut(s)	359, 637, 1184, 1459
KpnI	GGTACC	1 cut(s)	318
Ksp22I	TGATCA	2 cut(s)	1000, 1491
Kzo9I	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
LmnI	GCTCC	3 cut(s)	407, 484, 1255
Lsp1109I	GCAGC	6 cut(s)	6, 122, 474, 626, 705, 1426
LweI	GCATC	6 cut(s)	541, 631, 1138, 1148, 1192, 1306
MaeI	CTAG	5 cut(s)	126, 759, 791, 905, 935
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	6 cut(s)	166, 184, 367, 735, 806, 1106
MalI	GATC	8 cut(s)	8, 249, 564, 672, 822, 855, 1002, 1493
MboI	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
MboII	GAAGA	8 cut(s)	110, 272, 349, 478, 596, 896, 1036, 1067
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	1198, 1431
MlsI	TGGCCA	2 cut(s)	596, 949
MluCI	AATT	7 cut(s)	375, 537, 863, 887, 976, 1266, 1283
MluNI	TGGCCA	2 cut(s)	596, 949
MlyI	GAGTC	3 cut(s)	440, 743, 1167
MmeI	TCCRAC	3 cut(s)	243, 312, 555
Mox20I	TGGCCA	2 cut(s)	596, 949
Mph1103I	ATGCAT	2 cut(s)	556, 1299
MscI	TGGCCA	2 cut(s)	596, 949
MseI	TTAA	2 cut(s)	915, 1286
MslI	CAYNNNNRTG	1 cut(s)	1191
Msp20I	TGGCCA	2 cut(s)	596, 949
MspA1I	CMGCKG	2 cut(s)	419, 1439
MspI	CCGG	3 cut(s)	895, 990, 1409
MspR9I	CCNGG	6 cut(s)	312, 350, 598, 871, 895, 1355
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	5 cut(s)	312, 350, 598, 871, 1355
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	5 cut(s)	25, 110, 496, 1202, 1481
NciI	CCSGG	1 cut(s)	895
NdeII	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
NlaIII	CATG	3 cut(s)	1146, 1190, 1202
NlaIV	GGNNCC	4 cut(s)	316, 672, 969, 1257
NmuCI	GTSAC	4 cut(s)	367, 735, 806, 1106
NsbI	TGCGCA	1 cut(s)	360
NsiI	ATGCAT	2 cut(s)	556, 1299
NspI	RCATGY	1 cut(s)	1190
PagI	TCATGA	1 cut(s)	1198
PaqCI	CACCTGC	1 cut(s)	1370
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	993, 1386
PflMI	CCANNNNNTGG	1 cut(s)	1103
PkrI	GCNGC	9 cut(s)	21, 82, 112, 489, 614, 641, 695, 1273, 1441
Ple19I	CGATCG	1 cut(s)	856
PleI	GAGTC	3 cut(s)	439, 742, 1167
PpsI	GAGTC	3 cut(s)	439, 742, 1167
Psp124BI	GAGCTC	1 cut(s)	1431
Psp6I	CCWGG	5 cut(s)	310, 348, 596, 869, 1353
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	5 cut(s)	310, 348, 596, 869, 1353
PspN4I	GGNNCC	4 cut(s)	316, 672, 969, 1257
PspPI	GGNCC	3 cut(s)	600, 967, 984
PstI	CTGCAG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	670
PvuI	CGATCG	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	5 cut(s)	316, 708, 1252, 1334, 1418
RsaNI	GTAC	5 cut(s)	315, 707, 1251, 1333, 1417
RseI	CAYNNNNRTG	1 cut(s)	1191
SacI	GAGCTC	1 cut(s)	1431
SaqAI	TTAA	2 cut(s)	915, 1286
SatI	GCNGC	9 cut(s)	20, 81, 111, 488, 613, 640, 694, 1272, 1440
Sau3AI	GATC	8 cut(s)	6, 247, 562, 670, 820, 853, 1000, 1491
Sau96I	GGNCC	3 cut(s)	600, 967, 984
ScaI	AGTACT	1 cut(s)	1418
SchI	GAGTC	3 cut(s)	440, 743, 1167
ScrFI	CCNGG	6 cut(s)	312, 350, 598, 871, 895, 1355
SduI	GDGCHC	2 cut(s)	1198, 1431
SfaNI	GCATC	6 cut(s)	541, 631, 1138, 1148, 1192, 1306
SfcI	CTRYAG	2 cut(s)	640, 1306
SinI	GGWCC	2 cut(s)	967, 984
SmiMI	CAYNNNNRTG	1 cut(s)	1191
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SpeI	ACTAGT	2 cut(s)	125, 758
Sse9I	AATT	7 cut(s)	375, 537, 863, 887, 976, 1266, 1283
SsiI	CCGC	4 cut(s)	81, 419, 612, 1272
SspMI	CTAG	5 cut(s)	126, 759, 791, 905, 935
SstI	GAGCTC	1 cut(s)	1431
StyD4I	CCNGG	6 cut(s)	310, 348, 596, 869, 893, 1353
StyI	CCWWGG	1 cut(s)	785
TaaI	ACNGT	3 cut(s)	172, 190, 1041
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	3 cut(s)	246, 321, 852
TasI	AATT	7 cut(s)	375, 537, 863, 887, 976, 1266, 1283
TatI	WGTACW	1 cut(s)	1416
TauI	GCSGC	3 cut(s)	83, 615, 1274
TfiI	GAWTC	2 cut(s)	993, 1386
Tru1I	TTAA	2 cut(s)	915, 1286
Tru9I	TTAA	2 cut(s)	915, 1286
TscAI	CASTG	9 cut(s)	120, 186, 195, 262, 703, 1044, 1057, 1159, 1235
TseFI	GTSAC	4 cut(s)	367, 735, 806, 1106
TseI	GCWGC	6 cut(s)	19, 110, 487, 639, 693, 1439
Tsp45I	GTSAC	4 cut(s)	367, 735, 806, 1106
TspDTI	ATGAA	5 cut(s)	123, 134, 411, 732, 897
TspGWI	ACGGA	4 cut(s)	76, 766, 1268, 1484
TspRI	CASTG	9 cut(s)	120, 186, 195, 262, 703, 1044, 1057, 1159, 1235
Van91I	CCANNNNNTGG	1 cut(s)	1103
VpaK11BI	GGWCC	2 cut(s)	967, 984
XapI	RAATTY	4 cut(s)	537, 863, 887, 976
XceI	RCATGY	1 cut(s)	1190
XspI	CTAG	5 cut(s)	126, 759, 791, 905, 935
ZrmI	AGTACT	1 cut(s)	1418
Zsp2I	ATGCAT	2 cut(s)	556, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.