Rh1BG012900

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
1590411 .. 1591288
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG012900.1

Sequence Viewer

Length: 351 bp
ATGGTGCCAAGGCTACTGAATGATATTAGCGACGGAAAAAACAGTCTTGTGCTGTTTGTAAACCCCGAAATGATTCACTGTATTGATAAATTTTCTTGGCTTAGAGATGAAGAATTTTCTTGGCAAACTCTTGCTGGTCTTAATCCATTTAGTATTGAACTAGTTAAGGCATTGAAAACAAAGAAGTTGTTTATGTTAGACTACCATGATTTGCTCTTGCCTTACGTGAACAAAGTAAGAGAGATTGAAGGTACCACACTGTATGCTTCTCAAACACTATTCTTCCTCACCGAGGATGGCACACTGAGACCTATTGTCATTGAACTCACTCGGCCACTGGTTGGTCCCTAG

Protein Analysis

116

Amino Acids

13.38

Weight (kDa)

5.3

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 4 - 57 1.8e-08 Lipoxygenase
Lipoxygenase PF00305 56 - 112 7.8e-24 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 2 cut(s) 4, 251
AccB7I CCANNNNNTGG 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 2 cut(s) 89, 113
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 292, 341
AgsI TTSAA 4 cut(s) 158, 175, 248, 323
AhdI GACNNNNNGTC 1 cut(s) 314
AhlI ACTAGT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 332
ApoI RAATTY 2 cut(s) 89, 113
Asp700I GAANNNNTTC 1 cut(s) 72
Asp718I GGTACC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 344
BanI GGYRCC 2 cut(s) 4, 251
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 301
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 2 cut(s) 161, 349
Bme18I GGWCC 1 cut(s) 344
BmeRI GACNNNNNGTC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 6, 253, 346
BsaAI YACGTR 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 8, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 341
Bse1I ACTGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 8, 291
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 292, 341
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 342
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 2 cut(s) 4, 251
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 292, 341
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 301
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 3 cut(s) 6, 253, 346
BspT107I GGYRCC 2 cut(s) 4, 251
BspTNI GGTCTC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 2 cut(s) 8, 291
BssT1I CCWWGG 1 cut(s) 8
Bst4CI ACNGT 3 cut(s) 44, 80, 261
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 101, 305
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 4 cut(s) 76, 257, 302, 335
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 206
CviJI RGCY 3 cut(s) 13, 100, 334
CviKI_1 RGCY 3 cut(s) 13, 100, 334
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 2 cut(s) 101, 305
DriI GACNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 332
Eam1105I GACNNNNNGTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 209
FaiI YATR 3 cut(s) 194, 207, 264
FaqI GGGAC 1 cut(s) 330
FatI CATG 1 cut(s) 205
FokI GGATG 1 cut(s) 308
FspBI CTAG 2 cut(s) 161, 349
HaeIII GGCC 1 cut(s) 334
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 73
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 61, 229
Hpy8I GTNNAC 2 cut(s) 61, 229
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 3 cut(s) 44, 80, 261
HpyCH4IV ACGT 1 cut(s) 225
HpyF3I CTNAG 2 cut(s) 101, 305
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 209
KpnI GGTACC 1 cut(s) 255
LpnPI CCDG 2 cut(s) 120, 323
MaeI CTAG 2 cut(s) 161, 349
MaeII ACGT 1 cut(s) 225
MboII GAAGA 2 cut(s) 122, 274
MluCI AATT 2 cut(s) 89, 113
MnlI CCTC 2 cut(s) 286, 296
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 2 cut(s) 141, 165
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 3 cut(s) 6, 253, 346
NmeAIII GCCGAG 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 6, 253, 346
PspPI GGNCC 1 cut(s) 344
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 141, 165
Sau96I GGNCC 1 cut(s) 344
SetI ASST 3 cut(s) 228, 253, 313
SinI GGWCC 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 2 cut(s) 89, 113
SspMI CTAG 2 cut(s) 161, 349
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 3 cut(s) 44, 80, 261
TaiI ACGT 1 cut(s) 228
TasI AATT 2 cut(s) 89, 113
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 2 cut(s) 141, 165
Tru9I TTAA 2 cut(s) 141, 165
TscAI CASTG 4 cut(s) 83, 264, 309, 342
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 4 cut(s) 83, 264, 309, 342
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 344
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 2 cut(s) 89, 113
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 2 cut(s) 161, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.