Rh5BG535400

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
84498130 .. 84543627
45498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG535400.1

Sequence Viewer

Length: 2949 bp
ATGTTGAAACCCAGACTAGCACTTCACCCGTCAGAGTCTCTGTTTCTCCACCCCAAGTCGTTCCTACATGGAAGCAGTGGTCGCAGCAGTACCGCTTCACTTCCTGTCTGGTCAACAAAGCCCTCATTCCCCAATAAACACCAAAGCATTCGATTCGGCTCAATTAATCATAGATACAAAATAAAAGCCGTAAGCAGTGATAGTACCAGTACTAGTAGCAGCAGTGATAGTACCAGTACTAGGAGCAGCAGTGATGGTACTAGCAGCAGCGTCAGCAGTACTAGTACTAGCAGCACCAGCACTAGTAATACTAGCACTCCTGGACCGACGACAACGACGACGATAACCACTACCACTGAGGTGACGGAAGTAGTGACGGAAACTGAAGATGCAGTGGTCGACAAAGAAGTAGAAGTAGTGACCACAAAAGAAGTGGTGACGGAGAAGTTCACGAGTGTTAAAGCAACCATAACGGTGACGCTTACTGTTGGAGGGTTTCTGAACAACTTGGGCCTAACCCGAGGAATCGATGATGTCAGAGATATGCTTGGTCAAACTCTCTTCATGGATCTTATTAGTGCTCACGTTGATCCCAAAACTGGATCAGAGAAGGAGCACGTTACCGGGTTCGCACACAGGAGTAGCCAGAAGGACAGCGAGATTGTATACGAGACAGATTTTAAAGTTCCATTAGATTTTGGAGAAGTGGGTGCCGTTTTGATAGAGAATGAGCACCACAAGGAGATGTATCTCAAGGATATTGTGCTGGATGGCTTGCCTAATGGTCCTGAACTACTTACCTGTAATTCATGGCTCCATTCCAAGTATGACAATCCTGCGAAGAGAGTCTTCTTCACAAACAAGTCATATTTGCCATCTCAAACTCCAAGTGCATTGGTGAGGCTAAGAGAAGAGGAGCTTGTGACATTGCGCGGCAATGGCCAAGGAGAGCGCAAGAGCTTTGAGAGAATATACGATTACGATGTTTACAATGATCTTGGGAATCCTGATTCGAGTCTAAAGCTAATAAGACCAGTTCTTGGAGGAAGCGAAGAATTCCCCTATCCCAGGCGATGTCGAACTGGGCGACCAATGAGTGAAGCAGATAAACATTCGGAGAAGAGGAGCAGCAAGGTGTACGTTCCTAGAGACGAAGCTTTCTCAGAGGTGAAGCAGTTGACATTTTCAGCAAAGACATTGTACGCTGTCATGCATGCAGTAGTACCGTCACTGGAGAACGCCATCACTGACACTAATCTTGGATTCACATTGTTCACGTCAATAGACACACTTTTCAATGAAGGCATTAAGTTGCCTCCAATTAACGAAAAAGGGATTCTCCAAGCTATACTTCCTAGACTAGTAAATGCTTTGGCTTCTGGAGGTGATGTTTTGCGGTTCGTGCCCCCAGAAACAATGAATAGAGACAAATTCTTCTGGTTTAGGGACGAGGAATTTGCTAGGCAGACTCTTGCCGGTCTCAACCCATATAGCATTAAGTTGGTGACGGAATGGCCATTGAAGAGTGAATTGGATCCCGACGTGTATGGTCCCCCAGAATCTGCAATTACCTCGGAAATGATTGAGCGAGAAATTAAAGGCTTTGCGACCATCAAAGAGGCCATAAGAGAAAAGAAGTTGTTCATACTAGATTACCATGATTTGTTTTTACCATACGTGAGCAAAGTACGAGAGATTGAAGGCACAACACTTTATGGATCAAGGACATTGTTCTTCCTTACCCTAGAAGGCACCCTAAGGCCGCTGGCCATTGAGTTGACTCGACCGCCAATGGACGGGAAGCCTCAGTGGAAGCAAGCCTTCCAACCCAGCTGGAATGCTACCGGTGTCTGGCTTTGGAGGATTGCCAAAGCTCATGTCCTTGCTCATGACTCTGGTTACCATCAACTTGTTAGTCACTGGCTAAGAACGCATTGTGCCACAGAACCATATATAATTGCAACCAATCGTCAACTGAGTGTGTTGCACCCAATCTACAGATTGTTGCATCCCCATTTCAGATACACTATGGAGATCAATGCTCTTGCTCGTGAATCACTTATCAATGCCGGTGGCATCATTGAAACCTCATTCTCACCTGGAAAATATTCCATGGAGCTTTGCTCTATTGCCTATGCTAAGGAGTGGCGATTCGACCAAGAGGCTCTACCAGCCGACCTTATTCGCAGGGGCATGGCTGTTGAGGACCCAACTGCTCCCCACGGTCTGAGGCTATCGATTCAGGATTACCCTTTTGCCAATGATGGACTCCTCCTATGGGATGCCATTAAACAGTGGGTATCTGACTATGTAAATCACTACTACAGAGAGTCCACCCTTGTACAAACTGATCAAGAGCTCCAAGCATGGTGGACAGAGATCAGAACAGTAGGTCACGGAGACAAGAAGGACGAACCCTGGTGGCCTGACCTAAATACCCCTCAAGACCTCATCGACATCCTCGCAACAATGCTTTGGGTTACATCCGGTCACCATGCAGCAGTCAACTTTGGTCAGTATGCCTATGCAGGCTATTTCCCTAATCGCCCAACCATTGCAAGAACCAATGTGCCCACGGAGGACCCTGACGATGAGGTTTGGGAAATGTTCATGAAAAAACCCGAAGCTGCCCTTTTGCGGTGCTTTCCTTCGCAAATTCAAGCCACAACGATCATGGCGGTTTTAGACATTTTGTCTAGTCATTCGCCGGACGAGGAGTACATTGGAGAGAAGATGGAGGACGCCTGGGCTGAAGACGAAGTTATAAGGGCGGCGTTTGAGCGGTTTAAGGGGAGGCTGCTAATGCTTGAACAAACTATTGATGAAAGAAATGCTAATTTTGAGTTGAAGAACAGAAATGGAGCTGGGGTTGTGCCTTATGAGCTTTTGAAGCCCTTTTCAGAACCTGGGGTTACCGCGAAGGGTGTTCCATATAGCATCTCTATTTGA

Protein Analysis

982

Amino Acids

110.55

Weight (kDa)

5.61

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 207 - 285 5.7e-08 PLAT/LH2 domain
Lipoxygenase PF00305 299 - 965 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2765
AccB1I GGYRCC 2 cut(s) 710, 1751
AccB7I CCANNNNNTGG 1 cut(s) 1040
AccBSI CCGCTC 1 cut(s) 2782
AccI GTMKAC 2 cut(s) 399, 666
AccII CGCG 2 cut(s) 933, 2918
AclWI GGATC 6 cut(s) 576, 584, 610, 1529, 1542, 1726
AcoI YGGCCR 3 cut(s) 940, 1514, 1767
AcsI RAATTY 4 cut(s) 1055, 1430, 1454, 2655
AcuI CTGAAG 2 cut(s) 405, 2772
AcyI GRCGYC 1 cut(s) 2742
AfiI CCNNNNNNNGG 8 cut(s) 240, 599, 1040, 1068, 1796, 1851, 2278, 2637
AflIII ACRYGT 1 cut(s) 1542
AgeI ACCGGT 1 cut(s) 1844
AgsI TTSAA 9 cut(s) 7, 1297, 1522, 1700, 2084, 2660, 2810, 2848, 2890
AhdI GACNNNNNGTC 1 cut(s) 2692
AhlI ACTAGT 4 cut(s) 212, 281, 302, 1360
AjiI CACGTC 2 cut(s) 1278, 1543
AjnI CCWGG 6 cut(s) 319, 1067, 2098, 2417, 2744, 2905
AjuI GAANNNNNNNTTGG 4 cut(s) 1335, 1367, 1514, 1546
AleI CACNNNNGTG 1 cut(s) 359
Alw21I GWGCWC 4 cut(s) 583, 618, 735, 2361
Alw26I GTCTC 6 cut(s) 42, 665, 1143, 1419, 1484, 2394
AlwI GGATC 6 cut(s) 576, 584, 610, 1529, 1542, 1726
AlwNI CAGNNNCTG 2 cut(s) 1562, 2906
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 7 cut(s) 511, 940, 1514, 1620, 1760, 1767, 2423
ApoI RAATTY 4 cut(s) 1055, 1430, 1454, 2655
ArsI GACNNNNNNTTYG 4 cut(s) 1439, 1471, 1863, 1895
AseI ATTAAT 1 cut(s) 165
AsiGI ACCGGT 1 cut(s) 1844
Asp700I GAANNNNTTC 2 cut(s) 1640, 2107
AspLEI GCGC 2 cut(s) 933, 954
AspS9I GGNCC 6 cut(s) 323, 511, 785, 1550, 2206, 2581
AsuC2I CCSGG 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 5 cut(s) 323, 785, 1550, 2206, 2581
AxyI CCTNAGG 1 cut(s) 1757
BaeGI GKGCMC 2 cut(s) 1407, 2574
BalI TGGCCA 3 cut(s) 942, 1516, 1769
BamHI GGATCC 1 cut(s) 1534
BanI GGYRCC 2 cut(s) 710, 1751
BanII GRGCYC 1 cut(s) 2361
BauI CACGAG 2 cut(s) 451, 2049
BbsI GAAGAC 2 cut(s) 841, 2760
Bbv12I GWGCWC 4 cut(s) 583, 618, 735, 2361
BccI CCATC 8 cut(s) 248, 764, 883, 1250, 1619, 1911, 2258, 2728
BceAI ACGGC 2 cut(s) 173, 698
BcgI CGANNNNNNTGC 6 cut(s) 136, 170, 1439, 1473, 1554, 1588
BciT130I CCWGG 6 cut(s) 321, 1069, 2100, 2419, 2746, 2907
BclI TGATCA 1 cut(s) 2350
BcnI CCSGG 1 cut(s) 625
BcoDI GTCTC 6 cut(s) 42, 665, 1143, 1419, 1484, 2394
BcuI ACTAGT 4 cut(s) 212, 281, 302, 1360
BfmI CTRYAG 2 cut(s) 1996, 2323
BmcAI AGTACT 4 cut(s) 211, 238, 280, 286
Bme1390I CCNGG 7 cut(s) 321, 625, 1069, 2100, 2419, 2746, 2907
Bme18I GGWCC 5 cut(s) 323, 785, 1550, 2206, 2581
BmeRI GACNNNNNGTC 1 cut(s) 2692
BmeT110I CYCGRG 1 cut(s) 519
BmgBI CACGTC 2 cut(s) 1278, 1543
BmgT120I GGNCC 6 cut(s) 323, 511, 785, 1550, 2206, 2581
BmiI GGNNCC 7 cut(s) 712, 815, 1536, 1552, 1753, 2208, 2583
BmrFI CCNGG 7 cut(s) 321, 625, 1069, 2100, 2419, 2746, 2907
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 4 cut(s) 379, 2017, 2085, 2272
BmuI ACTGGG 1 cut(s) 1092
BpiI GAAGAC 2 cut(s) 841, 2760
BplI GAGNNNNNCTC 2 cut(s) 2108, 2140
BpmI CTGGAG 2 cut(s) 1253, 1401
Bpu10I CCTNAGC 1 cut(s) 2139
BpuEI CTTGAG 2 cut(s) 737, 2427
BpuMI CCSGG 1 cut(s) 625
Bsa29I ATCGAT 2 cut(s) 528, 2237
BsaAI YACGTR 1 cut(s) 1678
BsaHI GRCGYC 1 cut(s) 2742
BsaI GGTCTC 1 cut(s) 1484
BsaWI WCCGGW 2 cut(s) 1844, 2486
BsaXI ACNNNNNCTCC 8 cut(s) 235, 265, 301, 331, 1374, 1404, 2853, 2883
Bsc4I CCNNNNNNNGG 8 cut(s) 240, 599, 1040, 1068, 1796, 1851, 2278, 2637
Bse118I RCCGGY 3 cut(s) 1475, 1844, 2069
Bse1I ACTGG 7 cut(s) 207, 234, 604, 1034, 1087, 1236, 1925
Bse21I CCTNAGG 1 cut(s) 1757
Bse3DI GCAATG 3 cut(s) 926, 943, 2553
BseBI CCWGG 6 cut(s) 321, 1069, 2100, 2419, 2746, 2907
BseCI ATCGAT 2 cut(s) 528, 2237
BseGI GGATG 5 cut(s) 775, 2008, 2287, 2457, 2483
BseLI CCNNNNNNNGG 8 cut(s) 240, 599, 1040, 1068, 1796, 1851, 2278, 2637
BseMI GCAATG 3 cut(s) 926, 943, 2553
BseMII CTCAG 5 cut(s) 348, 1176, 1820, 1967, 2219
BseNI ACTGG 7 cut(s) 207, 234, 604, 1034, 1087, 1236, 1925
BseRI GAGGAG 4 cut(s) 929, 1138, 2261, 2729
BseSI GKGCMC 2 cut(s) 1407, 2574
BseYI CCCAGC 2 cut(s) 1829, 2864
Bsh1236I CGCG 2 cut(s) 933, 2918
Bsh1285I CGRYCG 1 cut(s) 1787
BshFI GGCC 7 cut(s) 513, 942, 1516, 1622, 1762, 1769, 2425
BshNI GGYRCC 2 cut(s) 710, 1751
BshTI ACCGGT 1 cut(s) 1844
BshVI ATCGAT 2 cut(s) 528, 2237
BsiEI CGRYCG 1 cut(s) 1787
BsiHKAI GWGCWC 4 cut(s) 583, 618, 735, 2361
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 6 cut(s) 624, 1476, 1845, 2070, 2487, 2708
BslFI GGGAC 2 cut(s) 1460, 1536
BslI CCNNNNNNNGG 8 cut(s) 240, 599, 1040, 1068, 1796, 1851, 2278, 2637
BsmAI GTCTC 6 cut(s) 42, 665, 1143, 1419, 1484, 2394
BsmBI CGTCTC 1 cut(s) 1143
BsmFI GGGAC 2 cut(s) 1460, 1536
BsmI GAATGC 2 cut(s) 147, 1843
BsnI GGCC 7 cut(s) 513, 942, 1516, 1622, 1762, 1769, 2425
Bso31I GGTCTC 1 cut(s) 1484
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 6 cut(s) 583, 618, 735, 1407, 2361, 2574
Bsp1407I TGTACA 1 cut(s) 2341
Bsp19I CCATGG 1 cut(s) 2112
BspANI GGCC 7 cut(s) 513, 942, 1516, 1622, 1762, 1769, 2425
BspCNI CTCAG 5 cut(s) 349, 1175, 1819, 1968, 2220
BspDI ATCGAT 2 cut(s) 528, 2237
BspFNI CGCG 2 cut(s) 933, 2918
BspHI TCATGA 2 cut(s) 1888, 2610
BspLI GGNNCC 7 cut(s) 712, 815, 1536, 1552, 1753, 2208, 2583
BspPI GGATC 6 cut(s) 576, 584, 610, 1529, 1542, 1726
BspT107I GGYRCC 2 cut(s) 710, 1751
BspTNI GGTCTC 1 cut(s) 1484
BsrBI CCGCTC 1 cut(s) 2782
BsrDI GCAATG 3 cut(s) 926, 943, 2553
BsrFI RCCGGY 3 cut(s) 1475, 1844, 2069
BsrGI TGTACA 1 cut(s) 2341
BsrI ACTGG 7 cut(s) 207, 234, 604, 1034, 1087, 1236, 1925
BssAI RCCGGY 3 cut(s) 1475, 1844, 2069
BssNAI GTATAC 1 cut(s) 667
BssNI GRCGYC 1 cut(s) 2742
BssSI CACGAG 2 cut(s) 451, 2049
BssT1I CCWWGG 2 cut(s) 943, 2112
Bst1107I GTATAC 1 cut(s) 667
Bst2BI CACGAG 2 cut(s) 451, 2049
Bst2UI CCWGG 6 cut(s) 321, 1069, 2100, 2419, 2746, 2907
Bst4CI ACNGT 6 cut(s) 475, 487, 1227, 2225, 2295, 2389
Bst6I CTCTTC 5 cut(s) 566, 836, 906, 1115, 1517
BstACI GRCGYC 1 cut(s) 2742
BstAUI TGTACA 1 cut(s) 2341
BstBAI YACGTR 1 cut(s) 1678
BstC8I GCNNGC 5 cut(s) 776, 1215, 1767, 1818, 2530
BstDEI CTNAG 9 cut(s) 357, 905, 1162, 1757, 1806, 1925, 1976, 2139, 2228
BstDSI CCRYGG 3 cut(s) 2112, 2221, 2574
BstEII GGTNACC 3 cut(s) 1898, 2489, 2911
BstENI CCTNNNNNAGG 1 cut(s) 1066
BstF5I GGATG 5 cut(s) 775, 2008, 2287, 2457, 2483
BstFNI CGCG 2 cut(s) 933, 2918
BstHHI GCGC 2 cut(s) 933, 954
BstMAI GTCTC 6 cut(s) 42, 665, 1143, 1419, 1484, 2394
BstMCI CGRYCG 1 cut(s) 1787
BstNI CCWGG 6 cut(s) 321, 1069, 2100, 2419, 2746, 2907
BstNSI RCATGY 1 cut(s) 1217
BstPI GGTNACC 3 cut(s) 1898, 2489, 2911
BstSCI CCNGG 7 cut(s) 319, 623, 1067, 2098, 2417, 2744, 2905
BstSFI CTRYAG 2 cut(s) 1996, 2323
BstSLI GKGCMC 2 cut(s) 1407, 2574
BstUI CGCG 2 cut(s) 933, 2918
BstV2I GAAGAC 2 cut(s) 841, 2760
BstX2I RGATCY 2 cut(s) 568, 1534
BstYI RGATCY 2 cut(s) 568, 1534
BstZ17I GTATAC 1 cut(s) 667
Bsu15I ATCGAT 2 cut(s) 528, 2237
Bsu36I CCTNAGG 1 cut(s) 1757
BsuRI GGCC 7 cut(s) 513, 942, 1516, 1622, 1762, 1769, 2425
BsuTUI ATCGAT 2 cut(s) 528, 2237
BtgI CCRYGG 3 cut(s) 2112, 2221, 2574
BtgZI GCGATG 1 cut(s) 1087
BtrI CACGTC 2 cut(s) 1278, 1543
BtsCI GGATG 5 cut(s) 775, 2008, 2287, 2457, 2483
BtsI GCAGTG 5 cut(s) 82, 202, 229, 256, 399
Cac8I GCNNGC 5 cut(s) 776, 1215, 1767, 1818, 2530
CaiI CAGNNNCTG 2 cut(s) 1562, 2906
CciI TCATGA 2 cut(s) 1888, 2610
CfoI GCGC 2 cut(s) 933, 954
Cfr10I RCCGGY 3 cut(s) 1475, 1844, 2069
Cfr13I GGNCC 6 cut(s) 323, 511, 785, 1550, 2206, 2581
ClaI ATCGAT 2 cut(s) 528, 2237
CseI GACGC 3 cut(s) 259, 487, 2750
CspAI ACCGGT 1 cut(s) 1844
CspCI CAANNNNNGTGG 6 cut(s) 414, 449, 2053, 2088, 2351, 2386
DdeI CTNAG 9 cut(s) 357, 905, 1162, 1757, 1806, 1925, 1976, 2139, 2228
DraI TTTAAA 1 cut(s) 682
DriI GACNNNNNGTC 1 cut(s) 2692
EaeI YGGCCR 3 cut(s) 940, 1514, 1767
Eam1104I CTCTTC 5 cut(s) 566, 836, 906, 1115, 1517
Eam1105I GACNNNNNGTC 1 cut(s) 2692
EarI CTCTTC 5 cut(s) 566, 836, 906, 1115, 1517
Ecl136II GAGCTC 1 cut(s) 2359
Eco130I CCWWGG 2 cut(s) 943, 2112
Eco24I GRGCYC 1 cut(s) 2361
Eco31I GGTCTC 1 cut(s) 1484
Eco47I GGWCC 5 cut(s) 323, 785, 1550, 2206, 2581
Eco53kI GAGCTC 1 cut(s) 2359
Eco57I CTGAAG 2 cut(s) 405, 2772
Eco81I CCTNAGG 1 cut(s) 1757
Eco88I CYCGRG 1 cut(s) 519
Eco91I GGTNACC 3 cut(s) 1898, 2489, 2911
EcoICRI GAGCTC 1 cut(s) 2359
EcoNI CCTNNNNNAGG 1 cut(s) 1066
EcoO109I RGGNCCY 2 cut(s) 2206, 2581
EcoO65I GGTNACC 3 cut(s) 1898, 2489, 2911
EcoRI GAATTC 1 cut(s) 1055
EcoRII CCWGG 6 cut(s) 319, 1067, 2098, 2417, 2744, 2905
EcoT14I CCWWGG 2 cut(s) 943, 2112
EcoT22I ATGCAT 1 cut(s) 1215
EcoT38I GRGCYC 1 cut(s) 2361
ErhI CCWWGG 2 cut(s) 943, 2112
Esp3I CGTCTC 1 cut(s) 1143
FaqI GGGAC 2 cut(s) 1460, 1536
FbaI TGATCA 1 cut(s) 2350
FblI GTMKAC 2 cut(s) 399, 666
FokI GGATG 5 cut(s) 782, 1995, 2294, 2444, 2470
FriOI GRGCYC 1 cut(s) 2361
GlaI GCGC 2 cut(s) 932, 953
GsaI CCCAGC 2 cut(s) 1833, 2868
GsuI CTGGAG 2 cut(s) 1253, 1401
HaeIII GGCC 7 cut(s) 513, 942, 1516, 1622, 1762, 1769, 2425
HapII CCGG 6 cut(s) 624, 1476, 1845, 2070, 2487, 2708
HgaI GACGC 3 cut(s) 259, 487, 2750
HhaI GCGC 2 cut(s) 933, 954
Hin1I GRCGYC 1 cut(s) 2742
Hin6I GCGC 2 cut(s) 931, 952
HinP1I GCGC 2 cut(s) 931, 952
HincII GTYRAC 6 cut(s) 114, 400, 1179, 1779, 1973, 2506
HindII GTYRAC 6 cut(s) 114, 400, 1179, 1779, 1973, 2506
HindIII AAGCTT 1 cut(s) 1155
HpaII CCGG 6 cut(s) 624, 1476, 1845, 2070, 2487, 2708
Hpy99I CGWCG 4 cut(s) 331, 340, 343, 1544
HpyAV CCTTC 9 cut(s) 604, 643, 1295, 1694, 1742, 1831, 2401, 2658, 2914
HpyCH4III ACNGT 6 cut(s) 475, 487, 1227, 2225, 2295, 2389
HpyCH4IV ACGT 6 cut(s) 585, 618, 1140, 1277, 1542, 1677
HpyF3I CTNAG 9 cut(s) 357, 905, 1162, 1757, 1806, 1925, 1976, 2139, 2228
HpySE526I ACGT 6 cut(s) 585, 618, 1140, 1277, 1542, 1677
Hsp92I GRCGYC 1 cut(s) 2742
HspAI GCGC 2 cut(s) 931, 952
Ksp22I TGATCA 1 cut(s) 2350
LmnI GCTCC 9 cut(s) 243, 613, 819, 916, 1125, 2116, 2221, 2364, 2861
LweI GCATC 4 cut(s) 379, 2017, 2085, 2272
MaeII ACGT 6 cut(s) 585, 618, 1140, 1277, 1542, 1677
MbiI CCGCTC 1 cut(s) 2782
MflI RGATCY 2 cut(s) 568, 1534
MhlI GDGCHC 6 cut(s) 583, 618, 735, 1407, 2361, 2574
MlsI TGGCCA 3 cut(s) 942, 1516, 1769
MluNI TGGCCA 3 cut(s) 942, 1516, 1769
MlyI GAGTC 8 cut(s) 44, 855, 1024, 1462, 1774, 1886, 2262, 2339
MmeI TCCRAC 2 cut(s) 469, 1849
Mox20I TGGCCA 3 cut(s) 942, 1516, 1769
Mph1103I ATGCAT 1 cut(s) 1215
MroXI GAANNNNTTC 2 cut(s) 1640, 2107
MscI TGGCCA 3 cut(s) 942, 1516, 1769
MseI TTAA 9 cut(s) 165, 459, 681, 1308, 1323, 1497, 1596, 2289, 2787
MslI CAYNNNNRTG 2 cut(s) 359, 473
Msp20I TGGCCA 3 cut(s) 942, 1516, 1769
MspA1I CMGCKG 2 cut(s) 1765, 1833
MspI CCGG 6 cut(s) 624, 1476, 1845, 2070, 2487, 2708
MspR9I CCNGG 7 cut(s) 321, 625, 1069, 2100, 2419, 2746, 2907
Mva1269I GAATGC 2 cut(s) 147, 1843
MvaI CCWGG 6 cut(s) 321, 1069, 2100, 2419, 2746, 2907
MvnI CGCG 2 cut(s) 933, 2918
NciI CCSGG 1 cut(s) 625
NcoI CCATGG 1 cut(s) 2112
NlaIV GGNNCC 7 cut(s) 712, 815, 1536, 1552, 1753, 2208, 2583
NsiI ATGCAT 1 cut(s) 1215
NspI RCATGY 1 cut(s) 1217
OliI CACNNNNGTG 1 cut(s) 359
PaeI GCATGC 1 cut(s) 1217
PagI TCATGA 2 cut(s) 1888, 2610
PcsI WCGNNNNNNNCGW 2 cut(s) 335, 1084
PctI GAATGC 2 cut(s) 147, 1843
PdmI GAANNNNTTC 2 cut(s) 1640, 2107
PflMI CCANNNNNTGG 1 cut(s) 1040
PfoI TCCNGGA 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 1844
PleI GAGTC 8 cut(s) 43, 854, 1023, 1462, 1774, 1886, 2262, 2338
PpsI GAGTC 8 cut(s) 43, 854, 1023, 1462, 1774, 1886, 2262, 2338
Ppu21I YACGTR 1 cut(s) 1678
PpuMI RGGWCCY 2 cut(s) 2206, 2581
PshBI ATTAAT 1 cut(s) 165
PsiI TTATAA 1 cut(s) 2765
Psp124BI GAGCTC 1 cut(s) 2361
Psp5II RGGWCCY 2 cut(s) 2206, 2581
Psp6I CCWGG 6 cut(s) 319, 1067, 2098, 2417, 2744, 2905
PspEI GGTNACC 3 cut(s) 1898, 2489, 2911
PspFI CCCAGC 2 cut(s) 1829, 2864
PspGI CCWGG 6 cut(s) 319, 1067, 2098, 2417, 2744, 2905
PspN4I GGNNCC 7 cut(s) 712, 815, 1536, 1552, 1753, 2208, 2583
PspPI GGNCC 6 cut(s) 323, 511, 785, 1550, 2206, 2581
PspPPI RGGWCCY 2 cut(s) 2206, 2581
PstNI CAGNNNCTG 2 cut(s) 1562, 2906
PsuI RGATCY 2 cut(s) 568, 1534
PvuII CAGCTG 1 cut(s) 1833
RseI CAYNNNNRTG 2 cut(s) 359, 473
SacI GAGCTC 1 cut(s) 2361
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 9 cut(s) 165, 459, 681, 1308, 1323, 1497, 1596, 2289, 2787
Sau96I GGNCC 6 cut(s) 323, 511, 785, 1550, 2206, 2581
ScaI AGTACT 4 cut(s) 211, 238, 280, 286
SchI GAGTC 8 cut(s) 44, 855, 1024, 1462, 1774, 1886, 2262, 2339
ScrFI CCNGG 7 cut(s) 321, 625, 1069, 2100, 2419, 2746, 2907
SduI GDGCHC 6 cut(s) 583, 618, 735, 1407, 2361, 2574
SfaNI GCATC 4 cut(s) 379, 2017, 2085, 2272
SfcI CTRYAG 2 cut(s) 1996, 2323
SinI GGWCC 5 cut(s) 323, 785, 1550, 2206, 2581
SmiMI CAYNNNNRTG 2 cut(s) 359, 473
SmlI CTYRAG 2 cut(s) 752, 2442
SmoI CTYRAG 2 cut(s) 752, 2442
SpeI ACTAGT 4 cut(s) 212, 281, 302, 1360
SphI GCATGC 1 cut(s) 1217
SspI AATATT 1 cut(s) 2108
SstI GAGCTC 1 cut(s) 2361
StyD4I CCNGG 7 cut(s) 319, 623, 1067, 2098, 2417, 2744, 2905
StyI CCWWGG 2 cut(s) 943, 2112
TaaI ACNGT 6 cut(s) 475, 487, 1227, 2225, 2295, 2389
TaiI ACGT 6 cut(s) 588, 621, 1143, 1280, 1545, 1680
TaqI TCGA 9 cut(s) 151, 399, 528, 1013, 1078, 1783, 2154, 2237, 2454
TaqII GACCGA 1 cut(s) 340
TatI WGTACW 6 cut(s) 209, 236, 278, 284, 2341, 2718
TauI GCSGC 3 cut(s) 936, 1765, 2774
Tru1I TTAA 9 cut(s) 165, 459, 681, 1308, 1323, 1497, 1596, 2289, 2787
Tru9I TTAA 9 cut(s) 165, 459, 681, 1308, 1323, 1497, 1596, 2289, 2787
TspDTI ATGAA 8 cut(s) 553, 798, 1314, 1433, 1633, 2599, 2627, 2838
TspGWI ACGGA 6 cut(s) 380, 392, 455, 1523, 2412, 2591
Van91I CCANNNNNTGG 1 cut(s) 1040
VpaK11BI GGWCC 5 cut(s) 323, 785, 1550, 2206, 2581
VspI ATTAAT 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 1066
XapI RAATTY 4 cut(s) 1055, 1430, 1454, 2655
XceI RCATGY 1 cut(s) 1217
XcmI CCANNNNNNNNNTGG 2 cut(s) 430, 2671
XmiI GTMKAC 2 cut(s) 399, 666
XmnI GAANNNNTTC 2 cut(s) 1640, 2107
ZrmI AGTACT 4 cut(s) 211, 238, 280, 286
Zsp2I ATGCAT 1 cut(s) 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.