Rroxscaffold_1G00004190

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
5622391 .. 5683309
60919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004190.1

Sequence Viewer

Length: 2823 bp
ATGGAAGTAGAGGGCAGCAGAACTTCACTTTCCGTCTGGTCAATAAGTCCTTCATTCCCCAACAAACACAAAAAACTTCGAGTTGGATCCAGTAACAATTACAACAACAACATAGAAGCCGTAAGTAGTACTAATAGTACTAGTAGCAGTAGCAGCAGCACTAGTAATACTACCACCCCTGGACCGACGACCACGACAACGATAACCACTACCACTACCACTGAGGTGACGGAAGTGGTGACGGAGAATGAAGATGCAGCGGTCGAGAAAGAAGTAGAAGTGGTGACCACGAAAGAAGTAGTGAAGGAGAAATTCATCAGTGTTAAAGCAACCATAACGGTGACGCTTACAGTTGGTGGGTTTCTGTCTCACATGGGTTTAGCTCGAGGACTTGATGATATAAAAGATTTGCTTGGCCAAACGCTCTTCATGGAGCTTCTTAGCGCTCACCTTGATCCCAAAACTGGATTAGAGAAGGAGCCAGTAACAGGGTTTGCACACCGAAGTCGCCGAGTGGAGGGTGAGATTATATACGAGACAGATTTTAAAGTTCCATTAGACTTTGGAGAAGCGGGAGCCGTTTTAATAGAGAATGAGCACCACAAGGAGATGTATCTCAAGGATATTGTCCTGGATGGGCTGCCTAATAGCCCTGTACTCCTTAGCTGTAATTCATGGCTTCACTCCAAGTATGACAATCCAGCCAAGAGGGTTTTCTTCACTAACAAGTCATATTTGCCATCTCAAACTCCAAGTGCATTGGTGAGGCTAAGAGAAGAGGAGCTTGTGACATTGCGCGGCAATGGCCAAGGAGAGCGCAAGAGCTTTGAGAGAATATACGATTACGATGTTTACAATGATCTTGGGAATCCTGATTCGAGTCTAAAGCTTATAAGAACGGTTCTTGGAGGAAGCAAAGAATTCCCCTATCCCAGGCGATGTCGAACTGGGCGACCAATGAGTGAAGTAGATAAATATTCGGAGAAAAGGAGCAACAAGGTGTACGTTCCTAGAGACGAAGCCTTCTCAGAGGTGAAGCAGTTAACATTTTCAGCAAAGACAATGTACGCTGTCATGCGTGCAGTAGTACCGTCCTTGGAGAAAGCCATCAATGACACTAATCTTGGATTCACATTGTTCACGTCAATAGACTCACTTTACAATGAAGGCATTAAGTTGCCTTCAATTCCTTCAATTAAGGAACAAGGGGTTCTCCAAGCGATACTTCCCAGACTAGTAAATGTTTTGGCTTCTGGAGGTGATGTTTTGCGATTCGTGCCCCCAGAAACAATGAATAGAGACAAATTCTTCTGGTTTAGGGACGAGGAATTCGCTAGGCAGACTCTTGCCGGTCTCAACCCATGTAGCATTAAGTTGGTGACGGAATGGCCATTGAAGAGTGAATTGGATCCCAACGTGTATGGTCCCCCAGAATCGGCAATCACCTCGGAAATGATTGAGCGAGAAATTATAGGCTTTTCGACCATCAAAGAGGCCGTAAGAGAAAAGAAGTTGTTCATACTAGATTACCATGATTTGTTTTTACCATACGTGAGCAAAGTACGAGAGATTGAAGGCACGACACTATATGGATCGAGGACATTGTTCTTCCTTACCCCAGAAGGCACCCTAAGGCCGCTGGCCATTGAGTTGACTCGACCGCCAATAGATGGGAAGCCTCAGTGGAAGCAAGCCTTCCAACCGAGCTGGAATGCTACCGGTGTCTGGCTTTGGAGGATTGCCAAAGCTCATGTCCTTGCTCATGACTCTGGTTACCATCAACTTGTTAGTCACTGGCTAAGAACGCATTGTGCCACAGAACCATATATAATCGCAACCAATCGTCAACTGAGTGTGTTGCACCCAATCTACAAATTGTTGCATCCCCATTTCAGATACACTATGGAGATCAATGCTCTTGCTCGTGAATCACTAATAAATGCCGGTGGCATCATTGAAACCTCATTCTCACCTGGAAAATACTCCATGGAGCTTTGCTCTATTGCATATGCTAAGGAGTGGCGATTCGACCAAGAGGCTCTTCCTGCTGACCTTATTCTCAGGGGCATGGCTGTTGAGGACCCAACTGCTCCCCACGGTCTGAGGCTAACAATTCAAGACTACCCTTTTGCCGATGATGGACTCCTCCTATGGGATGCCATTAAACAATGGGTCTCTGACTATGTAAATCACTACTACACAGGCTCCACCCTTGTACAAACTGATCAAGAGCTCCAAGCATGGTGGACAGAGATCAGAACAGTAGGTCACGGAGACAAGAAGGACGAACCCTGGTGGCCTGACCTGAATACCCCTCAAGACCTCATCAACATCCTCACAACAATGCTTTGGGTTGCATCCGGTCACCATGCAGCAGTCAACTTTGGTCAGTATGCCTATGCAGGCTACTTCCCTAATCGCCCAACCATTGCAAGGACCAATGTGCCCACGGAGGACCCTGACGATGAGGTTTGGGAAATGTTCATGAAAAAACCCGAAGCTGCTCTTTTGCGGTGCTTTCCTTCGCAAATTCAAGCCACAACAGTGATGGCGGTTTTAGACATTTTGTCTAGTCATTCGCCGGACGAGGAGTACATTGGAGAGAAGATGGAGGACGCGTGGGCTGAAGACGAAGTTATAAGGGCGGCGTTTGAGCGGTTTAAGGGGAGGCTGATGATGCTTGAACAAACCATTGATGAGAGAAATGCTAATTTTGAGCTGAAGAACAGAAATGGAGCTGGGGTTGTGCCTTATGAGCTTTTGAAGCCCTTTTCAGAACCTGGGGTTACCGGGAAGGGTGTTCCATATAGCATCTCTATTTGA

Protein Analysis

940

Amino Acids

106.06

Weight (kDa)

5.48

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 178 - 240 2.6e-07 PLAT/LH2 domain
Lipoxygenase PF00305 254 - 923 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 893, 2639
AccB1I GGYRCC 1 cut(s) 1625
AccB7I CCANNNNNTGG 1 cut(s) 1670
AccBSI CCGCTC 1 cut(s) 2656
AccII CGCG 2 cut(s) 798, 2618
AciI CCGC 9 cut(s) 260, 572, 798, 1637, 1661, 2512, 2552, 2645, 2656
AclWI GGATC 6 cut(s) 81, 94, 449, 1403, 1416, 1600
AcoI YGGCCR 4 cut(s) 415, 805, 1388, 1641
AcsI RAATTY 5 cut(s) 311, 920, 1304, 1328, 2529
AcuI CTGAAG 2 cut(s) 2646, 2741
AfaI GTAC 9 cut(s) 130, 139, 657, 1004, 1067, 1089, 1563, 2217, 2594
AfeI AGCGCT 1 cut(s) 445
AfiI CCNNNNNNNGG 9 cut(s) 464, 488, 517, 933, 1435, 1670, 1725, 2152, 2433
AflIII ACRYGT 2 cut(s) 1416, 2616
AgeI ACCGGT 1 cut(s) 1718
AgsI TTSAA 9 cut(s) 1185, 1194, 1396, 1574, 1958, 2117, 2534, 2684, 2764
AhdI GACNNNNNGTC 1 cut(s) 2566
AhlI ACTAGT 3 cut(s) 140, 161, 1234
AjiI CACGTC 1 cut(s) 1143
AjnI CCWGG 6 cut(s) 178, 630, 932, 1972, 2291, 2779
AjuI GAANNNNNNNTTGG 8 cut(s) 698, 730, 1209, 1241, 1388, 1420, 2025, 2057
AleI CACNNNNGTG 2 cut(s) 224, 2543
Alw21I GWGCWC 2 cut(s) 600, 2235
Alw26I GTCTC 7 cut(s) 372, 530, 1008, 1293, 1358, 2179, 2268
AlwI GGATC 6 cut(s) 81, 94, 449, 1403, 1416, 1600
AlwNI CAGNNNCTG 1 cut(s) 2780
Ama87I CYCGRG 1 cut(s) 384
Aor51HI AGCGCT 1 cut(s) 445
AoxI GGCC 7 cut(s) 415, 805, 1388, 1494, 1634, 1641, 2297
ApeKI GCWGC 7 cut(s) 15, 153, 156, 257, 640, 2372, 2501
ApoI RAATTY 5 cut(s) 311, 920, 1304, 1328, 2529
ArsI GACNNNNNNTTYG 6 cut(s) 1313, 1345, 1737, 1769, 2111, 2143
AsiGI ACCGGT 1 cut(s) 1718
Asp700I GAANNNNTTC 1 cut(s) 1514
AspLEI GCGC 3 cut(s) 446, 798, 819
AspS9I GGNCC 5 cut(s) 182, 1424, 2080, 2436, 2455
AsuC2I CCSGG 1 cut(s) 2791
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 5 cut(s) 182, 1424, 2080, 2436, 2455
AxyI CCTNAGG 1 cut(s) 1631
BaeGI GKGCMC 2 cut(s) 1281, 2448
BalI TGGCCA 4 cut(s) 417, 807, 1390, 1643
BamHI GGATCC 2 cut(s) 86, 1408
BanI GGYRCC 1 cut(s) 1625
BanII GRGCYC 1 cut(s) 2235
BauI CACGAG 1 cut(s) 1923
BbsI GAAGAC 1 cut(s) 2634
Bbv12I GWGCWC 2 cut(s) 600, 2235
BbvI GCAGC 7 cut(s) 27, 165, 168, 269, 627, 2384, 2488
BccI CCATC 9 cut(s) 629, 748, 1115, 1493, 1664, 1785, 2132, 2542, 2602
BceAI ACGGC 3 cut(s) 104, 563, 1481
BcgI CGANNNNNNTGC 2 cut(s) 1428, 1462
BciT130I CCWGG 6 cut(s) 180, 632, 934, 1974, 2293, 2781
BclI TGATCA 1 cut(s) 2224
BcnI CCSGG 1 cut(s) 2791
BcoDI GTCTC 7 cut(s) 372, 530, 1008, 1293, 1358, 2179, 2268
BcuI ACTAGT 3 cut(s) 140, 161, 1234
BfaI CTAG 7 cut(s) 141, 162, 1011, 1235, 1335, 1523, 2571
BfoI RGCGCY 1 cut(s) 447
BmcAI AGTACT 2 cut(s) 130, 139
Bme1390I CCNGG 7 cut(s) 180, 632, 934, 1974, 2293, 2781, 2791
Bme18I GGWCC 5 cut(s) 182, 1424, 2080, 2436, 2455
BmeRI GACNNNNNGTC 1 cut(s) 2566
BmeT110I CYCGRG 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 1143
BmgT120I GGNCC 5 cut(s) 182, 1424, 2080, 2436, 2455
BmiI GGNNCC 9 cut(s) 88, 480, 577, 1410, 1426, 1627, 2082, 2206, 2457
BmrFI CCNGG 7 cut(s) 180, 632, 934, 1974, 2293, 2781, 2791
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 6 cut(s) 244, 1891, 1959, 2146, 2366, 2667
BmuI ACTGGG 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 2634
BplI GAGNNNNNCTC 2 cut(s) 1982, 2014
BpmI CTGGAG 1 cut(s) 1275
Bpu10I CCTNAGC 2 cut(s) 662, 2013
BpuEI CTTGAG 2 cut(s) 602, 2301
BpuMI CCSGG 1 cut(s) 2791
BsaAI YACGTR 1 cut(s) 1552
BsaI GGTCTC 2 cut(s) 1358, 2179
BsaWI WCCGGW 2 cut(s) 1718, 2360
BsaXI ACNNNNNCTCC 8 cut(s) 1248, 1278, 2189, 2219, 2603, 2633, 2727, 2757
Bsc4I CCNNNNNNNGG 9 cut(s) 464, 488, 517, 933, 1435, 1670, 1725, 2152, 2433
Bse118I RCCGGY 3 cut(s) 1349, 1718, 1943
Bse1I ACTGG 5 cut(s) 90, 469, 482, 952, 1799
Bse21I CCTNAGG 1 cut(s) 1631
Bse3DI GCAATG 3 cut(s) 791, 808, 2427
BseBI CCWGG 6 cut(s) 180, 632, 934, 1974, 2293, 2781
BseGI GGATG 5 cut(s) 640, 1882, 2161, 2331, 2357
BseLI CCNNNNNNNGG 9 cut(s) 464, 488, 517, 933, 1435, 1670, 1725, 2152, 2433
BseMI GCAATG 3 cut(s) 791, 808, 2427
BseMII CTCAG 6 cut(s) 213, 1041, 1694, 1841, 2074, 2093
BseNI ACTGG 5 cut(s) 90, 469, 482, 952, 1799
BseRI GAGGAG 3 cut(s) 794, 2135, 2603
BseSI GKGCMC 2 cut(s) 1281, 2448
BseXI GCAGC 7 cut(s) 27, 165, 168, 269, 627, 2384, 2488
BseYI CCCAGC 1 cut(s) 2738
BsgI GTGCAG 1 cut(s) 1101
Bsh1236I CGCG 2 cut(s) 798, 2618
Bsh1285I CGRYCG 2 cut(s) 264, 1661
BshFI GGCC 7 cut(s) 417, 807, 1390, 1496, 1636, 1643, 2299
BshNI GGYRCC 1 cut(s) 1625
BshTI ACCGGT 1 cut(s) 1718
BsiEI CGRYCG 2 cut(s) 264, 1661
BsiHKAI GWGCWC 2 cut(s) 600, 2235
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 6 cut(s) 1350, 1719, 1944, 2361, 2582, 2790
BslFI GGGAC 2 cut(s) 1334, 1410
BslI CCNNNNNNNGG 9 cut(s) 464, 488, 517, 933, 1435, 1670, 1725, 2152, 2433
BsmAI GTCTC 7 cut(s) 372, 530, 1008, 1293, 1358, 2179, 2268
BsmBI CGTCTC 1 cut(s) 1008
BsmFI GGGAC 2 cut(s) 1334, 1410
BsmI GAATGC 1 cut(s) 1717
BsnI GGCC 7 cut(s) 417, 807, 1390, 1496, 1636, 1643, 2299
Bso31I GGTCTC 2 cut(s) 1358, 2179
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 4 cut(s) 600, 1281, 2235, 2448
Bsp1407I TGTACA 1 cut(s) 2215
Bsp143I GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
Bsp19I CCATGG 1 cut(s) 1986
BspACI CCGC 9 cut(s) 260, 572, 798, 1637, 1661, 2512, 2552, 2645, 2656
BspANI GGCC 7 cut(s) 417, 807, 1390, 1496, 1636, 1643, 2299
BspCNI CTCAG 6 cut(s) 214, 1040, 1693, 1842, 2073, 2094
BspFNI CGCG 2 cut(s) 798, 2618
BspHI TCATGA 2 cut(s) 1762, 2484
BspLI GGNNCC 9 cut(s) 88, 480, 577, 1410, 1426, 1627, 2082, 2206, 2457
BspPI GGATC 6 cut(s) 81, 94, 449, 1403, 1416, 1600
BspQI GCTCTTC 2 cut(s) 431, 2046
BspT107I GGYRCC 1 cut(s) 1625
BspTNI GGTCTC 2 cut(s) 1358, 2179
BsrBI CCGCTC 1 cut(s) 2656
BsrDI GCAATG 3 cut(s) 791, 808, 2427
BsrFI RCCGGY 3 cut(s) 1349, 1718, 1943
BsrGI TGTACA 1 cut(s) 2215
BsrI ACTGG 5 cut(s) 90, 469, 482, 952, 1799
BssAI RCCGGY 3 cut(s) 1349, 1718, 1943
BssMI GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
BssSI CACGAG 1 cut(s) 1923
BssT1I CCWWGG 3 cut(s) 808, 1095, 1986
Bst2BI CACGAG 1 cut(s) 1923
Bst2UI CCWGG 6 cut(s) 180, 632, 934, 1974, 2293, 2781
Bst4CI ACNGT 7 cut(s) 340, 352, 901, 1092, 2099, 2263, 2545
Bst6I CTCTTC 4 cut(s) 431, 771, 1391, 2046
BstAUI TGTACA 1 cut(s) 2215
BstBAI YACGTR 1 cut(s) 1552
BstC8I GCNNGC 4 cut(s) 1080, 1641, 1692, 2404
BstDSI CCRYGG 3 cut(s) 1986, 2095, 2448
BstEII GGTNACC 4 cut(s) 283, 1772, 2363, 2785
BstENI CCTNNNNNAGG 1 cut(s) 931
BstF5I GGATG 5 cut(s) 640, 1882, 2161, 2331, 2357
BstFNI CGCG 2 cut(s) 798, 2618
BstH2I RGCGCY 1 cut(s) 447
BstHHI GCGC 3 cut(s) 446, 798, 819
BstKTI GATC 8 cut(s) 89, 457, 862, 1411, 1595, 1911, 2227, 2256
BstMAI GTCTC 7 cut(s) 372, 530, 1008, 1293, 1358, 2179, 2268
BstMBI GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
BstMCI CGRYCG 2 cut(s) 264, 1661
BstMWI GCNNNNNNNGC 8 cut(s) 153, 804, 1276, 1804, 2045, 2677, 2755, 2764
BstNI CCWGG 6 cut(s) 180, 632, 934, 1974, 2293, 2781
BstPI GGTNACC 4 cut(s) 283, 1772, 2363, 2785
BstSCI CCNGG 7 cut(s) 178, 630, 932, 1972, 2291, 2779, 2789
BstSLI GKGCMC 2 cut(s) 1281, 2448
BstUI CGCG 2 cut(s) 798, 2618
BstV1I GCAGC 7 cut(s) 27, 165, 168, 269, 627, 2384, 2488
BstV2I GAAGAC 1 cut(s) 2634
BstX2I RGATCY 2 cut(s) 86, 1408
BstYI RGATCY 2 cut(s) 86, 1408
Bsu36I CCTNAGG 1 cut(s) 1631
BsuRI GGCC 7 cut(s) 417, 807, 1390, 1496, 1636, 1643, 2299
BtgI CCRYGG 3 cut(s) 1986, 2095, 2448
BtgZI GCGATG 1 cut(s) 952
BtrI CACGTC 1 cut(s) 1143
BtsCI GGATG 5 cut(s) 640, 1882, 2161, 2331, 2357
BtsIMutI CAGTG 5 cut(s) 219, 325, 1688, 1792, 2550
Cac8I GCNNGC 4 cut(s) 1080, 1641, 1692, 2404
CaiI CAGNNNCTG 1 cut(s) 2780
CciI TCATGA 2 cut(s) 1762, 2484
CfoI GCGC 3 cut(s) 446, 798, 819
Cfr10I RCCGGY 3 cut(s) 1349, 1718, 1943
Cfr13I GGNCC 5 cut(s) 182, 1424, 2080, 2436, 2455
CseI GACGC 2 cut(s) 352, 2624
Csp6I GTAC 9 cut(s) 129, 138, 656, 1003, 1066, 1088, 1562, 2216, 2593
CspAI ACCGGT 1 cut(s) 1718
CspCI CAANNNNNGTGG 2 cut(s) 2225, 2260
CviQI GTAC 9 cut(s) 129, 138, 656, 1003, 1066, 1088, 1562, 2216, 2593
DpnI GATC 8 cut(s) 88, 456, 861, 1410, 1594, 1910, 2226, 2255
DpnII GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
DraI TTTAAA 1 cut(s) 547
DriI GACNNNNNGTC 1 cut(s) 2566
EaeI YGGCCR 4 cut(s) 415, 805, 1388, 1641
Eam1104I CTCTTC 4 cut(s) 431, 771, 1391, 2046
Eam1105I GACNNNNNGTC 1 cut(s) 2566
EarI CTCTTC 4 cut(s) 431, 771, 1391, 2046
Ecl136II GAGCTC 1 cut(s) 2233
Eco130I CCWWGG 3 cut(s) 808, 1095, 1986
Eco24I GRGCYC 1 cut(s) 2235
Eco31I GGTCTC 2 cut(s) 1358, 2179
Eco47I GGWCC 5 cut(s) 182, 1424, 2080, 2436, 2455
Eco47III AGCGCT 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 2233
Eco57I CTGAAG 2 cut(s) 2646, 2741
Eco81I CCTNAGG 1 cut(s) 1631
Eco88I CYCGRG 1 cut(s) 384
Eco91I GGTNACC 4 cut(s) 283, 1772, 2363, 2785
EcoICRI GAGCTC 1 cut(s) 2233
EcoNI CCTNNNNNAGG 1 cut(s) 931
EcoO109I RGGNCCY 2 cut(s) 2080, 2455
EcoO65I GGTNACC 4 cut(s) 283, 1772, 2363, 2785
EcoRI GAATTC 2 cut(s) 920, 1328
EcoRII CCWGG 6 cut(s) 178, 630, 932, 1972, 2291, 2779
EcoT14I CCWWGG 3 cut(s) 808, 1095, 1986
EcoT38I GRGCYC 1 cut(s) 2235
ErhI CCWWGG 3 cut(s) 808, 1095, 1986
Esp3I CGTCTC 1 cut(s) 1008
FaqI GGGAC 2 cut(s) 1334, 1410
FauI CCCGC 1 cut(s) 565
FauNDI CATATG 1 cut(s) 2008
FbaI TGATCA 1 cut(s) 2224
FokI GGATG 5 cut(s) 647, 1869, 2168, 2318, 2344
FriOI GRGCYC 1 cut(s) 2235
FspBI CTAG 7 cut(s) 141, 162, 1011, 1235, 1335, 1523, 2571
GlaI GCGC 3 cut(s) 445, 797, 818
GsaI CCCAGC 1 cut(s) 2742
GsuI CTGGAG 1 cut(s) 1275
HaeII RGCGCY 1 cut(s) 447
HaeIII GGCC 7 cut(s) 417, 807, 1390, 1496, 1636, 1643, 2299
HapII CCGG 6 cut(s) 1350, 1719, 1944, 2361, 2582, 2790
HgaI GACGC 2 cut(s) 352, 2624
HhaI GCGC 3 cut(s) 446, 798, 819
Hin6I GCGC 3 cut(s) 444, 796, 817
HinP1I GCGC 3 cut(s) 444, 796, 817
HincII GTYRAC 4 cut(s) 1044, 1653, 1847, 2380
HindII GTYRAC 4 cut(s) 1044, 1653, 1847, 2380
HindIII AAGCTT 1 cut(s) 887
HpaI GTTAAC 1 cut(s) 1044
HpaII CCGG 6 cut(s) 1350, 1719, 1944, 2361, 2582, 2790
Hpy166II GTNNAC 8 cut(s) 853, 1003, 1044, 1140, 1653, 1847, 2247, 2380
Hpy188I TCNGA 8 cut(s) 982, 1030, 1450, 1895, 2103, 2179, 2258, 2776
Hpy188III TCNNGA 9 cut(s) 265, 872, 1254, 1763, 1925, 2117, 2228, 2318, 2485
Hpy8I GTNNAC 8 cut(s) 853, 1003, 1044, 1140, 1653, 1847, 2247, 2380
Hpy99I CGWCG 1 cut(s) 190
HpyCH4III ACNGT 7 cut(s) 340, 352, 901, 1092, 2099, 2263, 2545
HpyCH4IV ACGT 4 cut(s) 1005, 1142, 1416, 1551
HpyF10VI GCNNNNNNNGC 8 cut(s) 153, 804, 1276, 1804, 2045, 2677, 2755, 2764
HpySE526I ACGT 4 cut(s) 1005, 1142, 1416, 1551
HspAI GCGC 3 cut(s) 444, 796, 817
Ksp22I TGATCA 1 cut(s) 2224
KspAI GTTAAC 1 cut(s) 1044
Kzo9I GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
LguI GCTCTTC 2 cut(s) 431, 2046
Lsp1109I GCAGC 7 cut(s) 27, 165, 168, 269, 627, 2384, 2488
LweI GCATC 6 cut(s) 244, 1891, 1959, 2146, 2366, 2667
MaeI CTAG 7 cut(s) 141, 162, 1011, 1235, 1335, 1523, 2571
MaeII ACGT 4 cut(s) 1005, 1142, 1416, 1551
MalI GATC 8 cut(s) 88, 456, 861, 1410, 1594, 1910, 2226, 2255
MbiI CCGCTC 1 cut(s) 2656
MboI GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
MflI RGATCY 2 cut(s) 86, 1408
MhlI GDGCHC 4 cut(s) 600, 1281, 2235, 2448
MlsI TGGCCA 4 cut(s) 417, 807, 1390, 1643
MluI ACGCGT 1 cut(s) 2616
MluNI TGGCCA 4 cut(s) 417, 807, 1390, 1643
MlyI GAGTC 6 cut(s) 889, 1145, 1336, 1648, 1760, 2136
MmeI TCCRAC 2 cut(s) 64, 1723
Mox20I TGGCCA 4 cut(s) 417, 807, 1390, 1643
MroXI GAANNNNTTC 1 cut(s) 1514
MscI TGGCCA 4 cut(s) 417, 807, 1390, 1643
MseI TTAA 9 cut(s) 324, 546, 584, 1043, 1173, 1197, 1371, 2163, 2661
MslI CAYNNNNRTG 4 cut(s) 224, 338, 2342, 2543
Msp20I TGGCCA 4 cut(s) 417, 807, 1390, 1643
MspA1I CMGCKG 2 cut(s) 260, 1639
MspI CCGG 6 cut(s) 1350, 1719, 1944, 2361, 2582, 2790
MspR9I CCNGG 7 cut(s) 180, 632, 934, 1974, 2293, 2781, 2791
Mva1269I GAATGC 1 cut(s) 1717
MvaI CCWGG 6 cut(s) 180, 632, 934, 1974, 2293, 2781
MvnI CGCG 2 cut(s) 798, 2618
MwoI GCNNNNNNNGC 8 cut(s) 153, 804, 1276, 1804, 2045, 2677, 2755, 2764
NciI CCSGG 1 cut(s) 2791
NcoI CCATGG 1 cut(s) 1986
NdeI CATATG 1 cut(s) 2008
NdeII GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
NlaIV GGNNCC 9 cut(s) 88, 480, 577, 1410, 1426, 1627, 2082, 2206, 2457
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 9 cut(s) 226, 238, 283, 340, 787, 1378, 1790, 2267, 2363
OliI CACNNNNGTG 2 cut(s) 224, 2543
PaeR7I CTCGAG 1 cut(s) 384
PagI TCATGA 2 cut(s) 1762, 2484
PciSI GCTCTTC 2 cut(s) 431, 2046
PcsI WCGNNNNNNNCGW 1 cut(s) 949
PctI GAATGC 1 cut(s) 1717
PdmI GAANNNNTTC 1 cut(s) 1514
PfeI GAWTC 7 cut(s) 868, 875, 1128, 1272, 1433, 1928, 2025
PflMI CCANNNNNTGG 1 cut(s) 1670
PfoI TCCNGGA 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 1718
PleI GAGTC 6 cut(s) 888, 1145, 1336, 1648, 1760, 2136
PpsI GAGTC 6 cut(s) 888, 1145, 1336, 1648, 1760, 2136
Ppu21I YACGTR 1 cut(s) 1552
PpuMI RGGWCCY 2 cut(s) 2080, 2455
PsiI TTATAA 2 cut(s) 893, 2639
Psp124BI GAGCTC 1 cut(s) 2235
Psp5II RGGWCCY 2 cut(s) 2080, 2455
Psp6I CCWGG 6 cut(s) 178, 630, 932, 1972, 2291, 2779
PspEI GGTNACC 4 cut(s) 283, 1772, 2363, 2785
PspFI CCCAGC 1 cut(s) 2738
PspGI CCWGG 6 cut(s) 178, 630, 932, 1972, 2291, 2779
PspN4I GGNNCC 9 cut(s) 88, 480, 577, 1410, 1426, 1627, 2082, 2206, 2457
PspPI GGNCC 5 cut(s) 182, 1424, 2080, 2436, 2455
PspPPI RGGWCCY 2 cut(s) 2080, 2455
PspXI VCTCGAGB 1 cut(s) 384
PstNI CAGNNNCTG 1 cut(s) 2780
PsuI RGATCY 2 cut(s) 86, 1408
RsaI GTAC 9 cut(s) 130, 139, 657, 1004, 1067, 1089, 1563, 2217, 2594
RsaNI GTAC 9 cut(s) 129, 138, 656, 1003, 1066, 1088, 1562, 2216, 2593
RseI CAYNNNNRTG 4 cut(s) 224, 338, 2342, 2543
SacI GAGCTC 1 cut(s) 2235
SapI GCTCTTC 2 cut(s) 431, 2046
SaqAI TTAA 9 cut(s) 324, 546, 584, 1043, 1173, 1197, 1371, 2163, 2661
Sau3AI GATC 8 cut(s) 86, 454, 859, 1408, 1592, 1908, 2224, 2253
Sau96I GGNCC 5 cut(s) 182, 1424, 2080, 2436, 2455
ScaI AGTACT 2 cut(s) 130, 139
SchI GAGTC 6 cut(s) 889, 1145, 1336, 1648, 1760, 2136
ScrFI CCNGG 7 cut(s) 180, 632, 934, 1974, 2293, 2781, 2791
SduI GDGCHC 4 cut(s) 600, 1281, 2235, 2448
SfaNI GCATC 6 cut(s) 244, 1891, 1959, 2146, 2366, 2667
Sfr274I CTCGAG 1 cut(s) 384
SinI GGWCC 5 cut(s) 182, 1424, 2080, 2436, 2455
SlaI CTCGAG 1 cut(s) 384
SmiMI CAYNNNNRTG 4 cut(s) 224, 338, 2342, 2543
SmlI CTYRAG 3 cut(s) 384, 617, 2316
SmoI CTYRAG 3 cut(s) 384, 617, 2316
SpeI ACTAGT 3 cut(s) 140, 161, 1234
SsiI CCGC 9 cut(s) 260, 572, 798, 1637, 1661, 2512, 2552, 2645, 2656
SspI AATATT 1 cut(s) 977
SspMI CTAG 7 cut(s) 141, 162, 1011, 1235, 1335, 1523, 2571
SstI GAGCTC 1 cut(s) 2235
StyD4I CCNGG 7 cut(s) 178, 630, 932, 1972, 2291, 2779, 2789
StyI CCWWGG 3 cut(s) 808, 1095, 1986
TaaI ACNGT 7 cut(s) 340, 352, 901, 1092, 2099, 2263, 2545
TaiI ACGT 4 cut(s) 1008, 1145, 1419, 1554
TaqI TCGA 9 cut(s) 79, 264, 385, 878, 943, 1481, 1595, 1657, 2028
TaqII GACCGA 1 cut(s) 199
TatI WGTACW 5 cut(s) 128, 137, 655, 2215, 2592
TauI GCSGC 3 cut(s) 801, 1639, 2648
TfiI GAWTC 7 cut(s) 868, 875, 1128, 1272, 1433, 1928, 2025
Tru1I TTAA 9 cut(s) 324, 546, 584, 1043, 1173, 1197, 1371, 2163, 2661
Tru9I TTAA 9 cut(s) 324, 546, 584, 1043, 1173, 1197, 1371, 2163, 2661
TscAI CASTG 5 cut(s) 226, 325, 1688, 1799, 2550
TseFI GTSAC 9 cut(s) 226, 238, 283, 340, 787, 1378, 1790, 2267, 2363
TseI GCWGC 7 cut(s) 15, 153, 156, 257, 640, 2372, 2501
Tsp45I GTSAC 9 cut(s) 226, 238, 283, 340, 787, 1378, 1790, 2267, 2363
TspGWI ACGGA 6 cut(s) 22, 245, 257, 1397, 2286, 2465
TspRI CASTG 5 cut(s) 226, 325, 1688, 1799, 2550
Van91I CCANNNNNTGG 1 cut(s) 1670
VpaK11BI GGWCC 5 cut(s) 182, 1424, 2080, 2436, 2455
XagI CCTNNNNNAGG 1 cut(s) 931
XapI RAATTY 5 cut(s) 311, 920, 1304, 1328, 2529
XcmI CCANNNNNNNNNTGG 1 cut(s) 2545
XhoI CTCGAG 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 1514
XspI CTAG 7 cut(s) 141, 162, 1011, 1235, 1335, 1523, 2571
ZrmI AGTACT 2 cut(s) 130, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.