Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342063.1

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Forward (+)

37 .. 976

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342063.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggttcccaggctagtcaatgctatagcttccggagaagatgttctgcggtttgtgcccccagaaacaatgaacagagacaaattcttttggtttagggatgaggaatttgctaggcagactcttgcgggtcttaacccatatagcatcaagttggtgacggaatggccattgaggagtgaattggaccctgacgtatatggtcctccagaatctgcaatcaccacgaaaatgattgagcaagagatcagaggctttgcgaccatcaaagaggccataagagaaaagaagttgtttatactagattaccatgatttgttcttaccgtacgtgggcaaagtaagagagatcgaaggtacaactctgtatggatctaggacattgtttttcctcaccccagacggcacattgaggccgctggttattgagttgactcgaccgccactggacggaaagcctcagtggaagcaaaccttccaacccagctggaatgccaccggtgtctggctttggaggatcgccaaagctcatgtccttgctcacgattccggttaccatcaactcgttactcactggtatattggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010597 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

195

Amino Acids

22.63

Weight (kDa)

6.53

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	4 cut(s)	49, 128, 416, 440
AclWI	GGATC	2 cut(s)	379, 524
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	2 cut(s)	83, 107
AfaI	GTAC	2 cut(s)	329, 358
AfiI	CCNNNNNNNGG	3 cut(s)	332, 449, 504
AgeI	ACCGGT	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	8
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	3 cut(s)	29, 486, 527
AluI	AGCT	3 cut(s)	29, 486, 527
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	2 cut(s)	379, 524
AlwNI	CAGNNNCTG	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	32
AoxI	GGCC	3 cut(s)	167, 273, 413
ApoI	RAATTY	2 cut(s)	83, 107
ArsI	GACNNNNNNTTYG	2 cut(s)	516, 548
AsiGI	ACCGGT	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	187, 203
AsuHPI	GGTGA	3 cut(s)	169, 214, 385
AvaII	GGWCC	2 cut(s)	187, 203
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	169
BccI	CCATC	2 cut(s)	272, 564
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	4 cut(s)	14, 114, 302, 375
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	187, 203
BmgT120I	GGNCC	2 cut(s)	187, 203
BmiI	GGNNCC	2 cut(s)	6, 189
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	3 cut(s)	32, 497, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 449, 504
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	450, 578
BseAI	TCCGGA	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	332, 449, 504
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	450, 578
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	3 cut(s)	169, 275, 415
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	33, 498, 549
BsiWI	CGTACG	1 cut(s)	327
BslI	CCNNNNNNNGG	3 cut(s)	332, 449, 504
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	169, 275, 415
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	246, 348, 371, 516
BspACI	CCGC	4 cut(s)	49, 128, 416, 440
BspANI	GGCC	3 cut(s)	169, 275, 415
BspCNI	CTCAG	1 cut(s)	472
BspEI	TCCGGA	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	6, 189
BspPI	GGATC	2 cut(s)	379, 524
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	450, 578
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	4 cut(s)	246, 348, 371, 516
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	551
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	4 cut(s)	249, 351, 374, 519
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	4 cut(s)	246, 348, 371, 516
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	10
BstPI	GGTNACC	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	3 cut(s)	169, 275, 415
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	443, 467, 571
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	187, 203
Csp6I	GTAC	2 cut(s)	328, 357
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	2 cut(s)	311, 530
CviQI	GTAC	2 cut(s)	328, 357
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	4 cut(s)	248, 350, 373, 518
DpnII	GATC	4 cut(s)	246, 348, 371, 516
EaeI	YGGCCR	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	187, 203
Eco91I	GGTNACC	1 cut(s)	551
EcoO65I	GGTNACC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	314, 533
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FatI	CATG	2 cut(s)	310, 529
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	4 cut(s)	14, 114, 302, 375
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	3 cut(s)	169, 275, 415
HapII	CCGG	3 cut(s)	33, 498, 549
Hin1II	CATG	2 cut(s)	314, 533
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	4 cut(s)	121, 212, 433, 545
HpaII	CCGG	3 cut(s)	33, 498, 549
HphI	GGTGA	3 cut(s)	169, 214, 385
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	3 cut(s)	33, 209, 542
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	2 cut(s)	347, 484
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	195, 330
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	2 cut(s)	195, 330
Hsp92II	CATG	2 cut(s)	314, 533
Kpn2I	TCCGGA	1 cut(s)	32
Kzo9I	GATC	4 cut(s)	246, 348, 371, 516
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	4 cut(s)	14, 114, 302, 375
MaeII	ACGT	2 cut(s)	195, 330
MaeIII	GTNAC	3 cut(s)	157, 551, 565
MalI	GATC	4 cut(s)	248, 350, 373, 518
MboI	GATC	4 cut(s)	246, 348, 371, 516
MboII	GAAGA	1 cut(s)	50
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	3 cut(s)	83, 107, 182
MluNI	TGGCCA	1 cut(s)	169
MlyI	GAGTC	2 cut(s)	115, 427
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	9 cut(s)	97, 168, 216, 245, 265, 401, 405, 468, 507
Mox20I	TGGCCA	1 cut(s)	169
MroI	TCCGGA	1 cut(s)	32
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	2 cut(s)	135, 586
MslI	CAYNNNNRTG	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	169
MspA1I	CMGCKG	2 cut(s)	418, 486
MspI	CCGG	3 cut(s)	33, 498, 549
MspR9I	CCNGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	4 cut(s)	246, 348, 371, 516
NlaIII	CATG	2 cut(s)	314, 533
NlaIV	GGNNCC	2 cut(s)	6, 189
NmuCI	GTSAC	1 cut(s)	157
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	212, 545
Pfl23II	CGTACG	1 cut(s)	327
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	2 cut(s)	115, 427
PpsI	GAGTC	2 cut(s)	115, 427
Ppu21I	YACGTR	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	551
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	8
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	6, 189
PspPI	GGNCC	2 cut(s)	187, 203
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	2 cut(s)	329, 358
RsaNI	GTAC	2 cut(s)	328, 357
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	135, 586
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	4 cut(s)	246, 348, 371, 516
Sau96I	GGNCC	2 cut(s)	187, 203
SchI	GAGTC	2 cut(s)	115, 427
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	7 cut(s)	31, 198, 333, 358, 476, 488, 529
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	187, 203
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	83, 107, 182
SsiI	CCGC	4 cut(s)	49, 128, 416, 440
SspMI	CTAG	4 cut(s)	14, 114, 302, 375
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	2 cut(s)	198, 333
TaqI	TCGA	2 cut(s)	351, 436
TasI	AATT	3 cut(s)	83, 107, 182
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	212, 545
Tru1I	TTAA	2 cut(s)	135, 586
Tru9I	TTAA	2 cut(s)	135, 586
TscAI	CASTG	3 cut(s)	450, 467, 578
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	2 cut(s)	176, 465
TspRI	CASTG	3 cut(s)	450, 467, 578
VpaK11BI	GGWCC	2 cut(s)	187, 203
XapI	RAATTY	2 cut(s)	83, 107
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	4 cut(s)	14, 114, 302, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.