Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

35329372 .. 35330013

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTTATTTTGGATTATCACGATCTGCTTATGCCTTATGTCAACAAAGTGAGAGAGATAGAAGGGACCACACTGTATGGTTCTAGGACACTCTTCTTCCTCACTAAAGTAGGCACGTTGAGGCATGTTGCCATTGAACTAACTCATCCGCCTGTTGGTGACAAGCCACAATGGAAGCAAGTGTTTACTCCTACCTGGGATGCCACTGGATGCTGGCTGTGGAGAATAACTAAAGCGCATGTTTTTGCTCATGATGCTGGCTATCATCAGCTAGTCATCCACTGGCTGAGGACTCATTGCTGTACAGAGCCATACATAATTGCTGCTAATCGCCAATTGAGTGCAATGCATCCCATCTACAGACTTCTACTTCCTCATTTTCGGTACACAATGGAAATCAATGCCCTGGCTCGAGAAAGCCTCATTAACGCGGGTGGAATCATTGAGACCTCCTTCTCACCGGCAAAGTACTCCGTTGAGCTTAGTTCAGCTGCTTATGACAAGTTCTGGCGCTTTGATGCAAAAGCTTTGCCCACAGATTTAATTAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

184

Amino Acids

21.36

Weight (kDa)

8.99

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 184	2.3e-98	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	149, 431
AfaI	GTAC	3 cut(s)	304, 386, 470
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	194, 405
AluBI	AGCT	4 cut(s)	271, 481, 491, 527
AluI	AGCT	4 cut(s)	271, 481, 491, 527
Alw26I	GTCTC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	323, 491
AspLEI	GCGC	2 cut(s)	238, 513
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	170, 450
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	310, 478
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	196, 407
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	84, 272
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	514
BisI	GCNGC	2 cut(s)	324, 492
BlsI	GCNGC	2 cut(s)	325, 493
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	196, 407
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	196, 407
BmsI	GCATC	5 cut(s)	190, 200, 244, 358, 508
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
Bpu10I	CCTNAGC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	195, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	211, 287
Bse3DI	GCAATG	2 cut(s)	295, 351
BseBI	CCWGG	2 cut(s)	196, 407
BseDI	CCNNGG	2 cut(s)	195, 405
BseGI	GGATG	5 cut(s)	145, 205, 215, 276, 349
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	2 cut(s)	295, 351
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	211, 287
BseXI	GCAGC	2 cut(s)	310, 478
Bsh1236I	CGCG	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	411
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	149, 431
BspCNI	CTCAG	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	431
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	295, 351
BsrFI	RCCGGY	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	211, 287
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	195, 405
BssMI	GATC	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	196, 407
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	215, 259
BstDEI	CTNAG	2 cut(s)	287, 482
BstF5I	GGATG	5 cut(s)	145, 205, 215, 276, 349
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	238, 513
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	196, 407
BstNSI	RCATGY	2 cut(s)	128, 242
BstSCI	CCNGG	2 cut(s)	194, 405
BstSFI	CTRYAG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	310, 478
BtsCI	GGATG	5 cut(s)	145, 205, 215, 276, 349
BtsIMutI	CAGTG	3 cut(s)	71, 204, 280
Cac8I	GCNNGC	2 cut(s)	215, 259
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	2 cut(s)	238, 513
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	303, 385, 469
CviAII	CATG	3 cut(s)	125, 239, 251
CviQI	GTAC	3 cut(s)	303, 385, 469
DdeI	CTNAG	2 cut(s)	287, 482
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	194, 405
EcoT22I	ATGCAT	1 cut(s)	351
FaeI	CATG	3 cut(s)	128, 242, 254
FaiI	YATR	9 cut(s)	32, 39, 78, 126, 240, 252, 313, 317, 498
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	124, 238, 250
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	324, 492
FokI	GGATG	5 cut(s)	132, 212, 222, 263, 336
Fsp4HI	GCNGC	2 cut(s)	324, 492
FspBI	CTAG	2 cut(s)	84, 272
GlaI	GCGC	2 cut(s)	237, 512
GluI	GCNGC	2 cut(s)	324, 492
HaeII	RGCGCY	1 cut(s)	514
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	2 cut(s)	238, 513
Hin1II	CATG	3 cut(s)	128, 242, 254
Hin6I	GCGC	2 cut(s)	236, 511
HinP1I	GCGC	2 cut(s)	236, 511
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	2 cut(s)	292, 438
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	170, 450
Hpy166II	GTNNAC	3 cut(s)	43, 186, 387
Hpy188III	TCNNGA	3 cut(s)	20, 251, 413
Hpy8I	GTNNAC	3 cut(s)	43, 186, 387
HpyAV	CCTTC	3 cut(s)	56, 463, 543
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	344, 349, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	287, 482
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	128, 242, 254
HspAI	GCGC	2 cut(s)	236, 511
Kzo9I	GATC	1 cut(s)	22
Lsp1109I	GCAGC	2 cut(s)	310, 478
LweI	GCATC	5 cut(s)	190, 200, 244, 358, 508
MaeI	CTAG	2 cut(s)	84, 272
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	85, 88
MfeI	CAATTG	1 cut(s)	335
MluCI	AATT	3 cut(s)	318, 335, 543
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	6 cut(s)	110, 114, 282, 384, 431, 460
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	2 cut(s)	426, 542
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	2 cut(s)	196, 407
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	196, 407
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	3 cut(s)	128, 242, 254
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	2 cut(s)	128, 242
PaeR7I	CTCGAG	1 cut(s)	411
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	325, 493
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	194, 405
PspGI	CCWGG	2 cut(s)	194, 405
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	304, 386, 470
RsaNI	GTAC	3 cut(s)	303, 385, 469
SaqAI	TTAA	2 cut(s)	426, 542
SatI	GCNGC	2 cut(s)	324, 492
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	196, 407
SetI	ASST	8 cut(s)	119, 197, 273, 452, 483, 493, 529, 554
SfaNI	GCATC	5 cut(s)	190, 200, 244, 358, 508
SfcI	CTRYAG	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	3 cut(s)	318, 335, 543
SsiI	CCGC	2 cut(s)	149, 431
SspMI	CTAG	2 cut(s)	84, 272
StyD4I	CCNGG	2 cut(s)	194, 405
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	412
TasI	AATT	3 cut(s)	318, 335, 543
TatI	WGTACW	2 cut(s)	302, 468
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	2 cut(s)	426, 542
Tru9I	TTAA	2 cut(s)	426, 542
TscAI	CASTG	3 cut(s)	78, 211, 287
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	323, 491
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	3 cut(s)	78, 211, 287
VpaK11BI	GGWCC	1 cut(s)	66
XceI	RCATGY	2 cut(s)	128, 242
XhoI	CTCGAG	1 cut(s)	411
XspI	CTAG	2 cut(s)	84, 272
ZrmI	AGTACT	1 cut(s)	470
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.