Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Forward (+)

35161419 .. 35161847

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTATGCCGGATACTTCCCAAATCGTCCTACAATAGCTCGAACCAACATGTCAACTGAAGATCCATCTGAGGAGCTTTTCAACAACTTTTTAAAGAGGCCAGAATCTACATTGCTAATGTGCTTCCCCTCACAGATTCAAGCAACCAAAATAATGGTCGTTTTAGACATGTTGTCAAACCATTCACCCGATGAGGAGTATCTTGGGGAGGTTATGGAGTCATCTTGGGCTGAAAATCCTGTCATAAAAGCGGCATTTGAGCTCTTCAATGGCAATTTGAAGAACCTAGAAGGAATAATCGATGAGAGGAATACCAATATAAACCTGAGAAACAGAGTTGGAGCAGGAGTTATTCCATATGAGTTTTTGAAGCCATTCTCAAAGCCTGGGGTCACAGGAATGGGAGTTCCTAATAGTATTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

4.88

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	2 - 125	7.9e-41	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	78
AflIII	ACRYGT	2 cut(s)	48, 168
AgsI	TTSAA	6 cut(s)	82, 140, 268, 280, 370, 423
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	385
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	3 cut(s)	38, 76, 262
AluI	AGCT	3 cut(s)	38, 76, 262
Alw21I	GWGCWC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	387
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	2 cut(s)	60, 317
BseRI	GAGGAG	2 cut(s)	86, 209
BshFI	GGCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	9
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	61, 318
BspDI	ATCGAT	1 cut(s)	300
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	69, 326
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	52, 172
BstSCI	CCNGG	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	300
CviAII	CATG	2 cut(s)	49, 169
CviJI	RGCY	7 cut(s)	38, 76, 100, 230, 262, 373, 385
CviKI_1	RGCY	7 cut(s)	38, 76, 100, 230, 262, 373, 385
DdeI	CTNAG	2 cut(s)	69, 326
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DraI	TTTAAA	1 cut(s)	93
DriI	GACNNNNNGTC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	269
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	2 cut(s)	52, 172
FaiI	YATR	8 cut(s)	6, 50, 170, 215, 245, 320, 358, 360
FatI	CATG	2 cut(s)	48, 168
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	2 cut(s)	52, 172
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	104, 136, 218
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	69, 326
Hsp92II	CATG	2 cut(s)	52, 172
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	73, 341
LpnPI	CCDG	8 cut(s)	22, 114, 252, 330, 338, 372, 381, 399
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	71, 256, 292
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	2 cut(s)	274, 423
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	6 cut(s)	64, 90, 139, 187, 202, 300
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	52, 172
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	2 cut(s)	52, 172
PciI	ACATGT	2 cut(s)	48, 168
PciSI	GCTCTTC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	104, 136
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	2 cut(s)	48, 168
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	6 cut(s)	40, 78, 213, 264, 288, 327
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	274, 423
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	385
TaqI	TCGA	2 cut(s)	40, 300
TasI	AATT	2 cut(s)	274, 423
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	104, 136
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
XceI	RCATGY	2 cut(s)	52, 172
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.