Rw1G000400

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
673273 .. 678630
5358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000400.1

Sequence Viewer

Length: 2736 bp
ATGATGAAGCCTCAGCTGCAAAAACCACTCTCCTCCTCTGCTAGATCTAGTCCTCTCTTACCACTAAAACCCGGCAGCTCCGCCATTCTGAGCAGCCCTTCCTTCGTCAACATCCTTCCTGCACGCGGCCGTACAAAGCACCCCTTGAGCAAAAAATATAATCGCATCCGTGCCTCCAGTGAAGTAAAGGTAGCGACTGCAACCAACACAGGGGTGGATAAAAATGATACTGCAGTTACAGTGAAGGCAGTGGTTACGGTGCAAGAAACAGCGGCAAACATCCTCTCCACCCTTAGCTTGACTGCACCGCTCGACACCCTCACCGATTTCGCCGGCAAAACCTTTCTTCTCGAGCTCGTCAGCGCTCAACTTGACCCCAGGACTGGGTTGGAGAATGAAACAATAAAGGGGTATGCACACAAAGTGAACCAAAAAGAGACGATCGTCACATACGAGAGTGTGCTGACGATCCCAGCGGGGTTCGGAGATATTGGAGCGGTTCAGGTTGAGAATGAGCACCACAAGGAAGCTTACATCAAGAGTATCGAGATCACCGGCTTCCCAAATGGCACCTCTGTTAGTGTTCCATGTAATTCATGGACTCATTCCAAGTATGACAATAAGCAGAAGAGAATCTTTTTCACCAACAAGTCTTACTTACCATCAGAGACACCAAGTGGGATCAAGAGGCTAAGAGAAGAGGAGCTGCAACTTCTGCAAGGAAATGGCGAGGGTGAAAGGAAAGCATCTGAAAGGATTTACGATTATGATACATACAATGATCTTGGAGACCCAGATAGCAAAGACGAGTTGGCTAGGCCTGTCCTTGGTGGCAAAGACCACCCGTACCCTAGGCGCTGCAGAACTGGACGACCACGCACTAAAAAGGATCCATTATCAGAGGAAAGAAGCAGTAGCGTGTATGTACCAAGAGATGAAGCGTTTGCAGAGTTGAAACAGCTCACATTCTCTGCAAAGACCCTGAAATCTGTGCTGCACGCATTGCTTCCTCAGCTTGAGATGACACTTGTTGATCCAGAGCTAGGATTTCCCTACTTCACAGCCATAGATTCATTGTTCAATGAAGGAGTCACATTGCCTAAGCCAACAGCTAGTGGCTTTTTTCAGTCAATCATCCCAAGGCTAGTCAAGGCAATTAGCGATGGACAAGATGATCTCTTGCTCTTTGAGACCCCTGAAATACTTGATCGTGATAAATTTTCTTGGTTCAGAGATGAAGAATTTTCTCGACAAACTCTAGCTGGTCTTAATCCATATAGCATAGAGCTAGTTACGGAATGGCCATTGAAAAGTAAACTTGACCCCGAGATTTATGGCCCAGCTGAATCATTGATCACAACAGAAGTGGTGGAGAAGGAGATCAAAGGCTTTATGACTGTCAATGAGGCCTTAAAAAGAAAGAAGCTCTTTATTTTGGATTATCATGATCTGTTCATGCCTTATGTGAACAAAGTGAGAGAGGTTGAAGGAACCACACTGTATGGTTCTCGGACACTTTTCTTCCTCAATGAGAATGGCACACTGAGGCCTGTTGCCATTGAACTCACTAGGCCACCCATTGGGGACAAGCCCCAATGGAAGGAAGTGTTTACCCCAACATGGGATGCCACTGGTTGCTGGCTTTGGAGGCTTGCGAAAGCCCACGTTTGTGCCCATGATTCAGGCTATCATCAGCTTGTCATCCACTGGCTGAGGACTCATTGTTGTACAGAACCATACATAATTGCAGCTAATCGACAATTAAGTGCAATGCATCCCATCTATAGGCTTCTACATCCTCATTTTCGTTATACAATGGAAATCAATGCTCTGGCTCGAGAAAGCCTCATTAATGCAGGTGGAATCATTGAGGCCTGCTTCTCACCAGCAAAGTACTCAATTGAGCTCAGTTCTGCAGCTTATGACCAGCTTTGGCGCTTTGACATGGAAGCTTTGCCTGCAGATCTAATCAGAAGGGGAATGGCAGTTGAGGATCCGACAACTGAGCATGGTGTGAGGTTAACAATTGAAGACTACCCATTTGCAAATGATGGTCTCATTCTGTGGGATGCCATTAAGGAGTGGGTGGGTGACTATGTGAATCACTATTATCCAGACCCAACTCTTGTTGAATCTGATAATGAGCTTCAAGCTTGGTGGACAGAAGTTAGAACCAAAGGCCATGCAGACAAAAAAGATGAATCCTGGTGGCCTGTTTTGAAAACCCCGGAAGATCTCATTCATACCTTGACAACTATAATTTGGGTTACAGCTGGACATCATGCTGCAGTGAACTTTGGTCAGTACATGTATGCCGGATACTTCCCGAACCGGCCTACAATAGCTCGAAGCAACATGCCAACTGAAGATCCAAACGATGATCTTTTCAAGATATTTTTGAAGAAACCAGAAGCTGCATTGCTGAGGTGCTTCCCCTCACAGATTCAAGCAACAAAAGTGATGGCTGTCTTAGATGTATTATCGAACCATTCACCCGATGAGGAGTACATTGGTGGGAATGTGGAGTCATCTTGGGCTGAAAACCCGGTGATAAATGCAGCTTTCGAGAGGTTCAATGGCAATTTGAAGAAGCTAGAAGGAATTATTGATGAGAGGAACACCAATATGAAGCTGAAAAACAGAGTTGGAGCAGGGGTTGTTCCATATGAGCTTTTGAAGCCATTCTCAGAATCAGGGGTCACAGGAATGGGAGTTCCCAACAGCATCTCCATCTAA

Protein Analysis

911

Amino Acids

102.56

Weight (kDa)

5.88

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 144 - 214 7.7e-08 PLAT/LH2 domain
Lipoxygenase PF00305 227 - 894 0.0 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1847
Acc36I ACCTGC 1 cut(s) 1847
AccB1I GGYRCC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 1580
AccBSI CCGCTC 2 cut(s) 310, 497
AccII CGCG 1 cut(s) 126
AciI CCGC 6 cut(s) 81, 126, 272, 308, 476, 497
AclWI GGATC 8 cut(s) 463, 689, 884, 897, 1028, 1988, 2001, 2363
AcoI YGGCCR 2 cut(s) 127, 1301
AcsI RAATTY 2 cut(s) 1217, 1241
AcuI CTGAAG 1 cut(s) 2385
AdeI CACNNNGTG 2 cut(s) 424, 677
AfaI GTAC 7 cut(s) 133, 848, 927, 1729, 1895, 2306, 2507
AfeI AGCGCT 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 2307
AjnI CCWGG 2 cut(s) 377, 2204
AleI CACNNNNGTG 2 cut(s) 212, 1668
AloI GAACNNNNNNTCC 2 cut(s) 2697, 2729
Alw21I GWGCWC 3 cut(s) 357, 519, 1908
Alw26I GTCTC 5 cut(s) 431, 662, 783, 1184, 2060
AlwI GGATC 8 cut(s) 463, 689, 884, 897, 1028, 1988, 2001, 2363
AlwNI CAGNNNCTG 1 cut(s) 2414
Ama87I CYCGRG 3 cut(s) 350, 1325, 1836
Aor51HI AGCGCT 1 cut(s) 364
ApoI RAATTY 2 cut(s) 1217, 1241
ArsI GACNNNNNNTTYG 2 cut(s) 2024, 2056
AseI ATTAAT 1 cut(s) 1851
Asp700I GAANNNNTTC 1 cut(s) 2681
AspA2I CCTAGG 1 cut(s) 851
AspLEI GCGC 3 cut(s) 365, 858, 1938
AspS9I GGNCC 1 cut(s) 1337
AsuC2I CCSGG 3 cut(s) 72, 2228, 2546
AsuHPI GGTGA 8 cut(s) 313, 544, 634, 746, 1875, 2102, 2484, 2560
AvaI CYCGRG 3 cut(s) 350, 1325, 1836
AvrII CCTAGG 1 cut(s) 851
BaeGI GKGCMC 1 cut(s) 1675
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BalI TGGCCA 1 cut(s) 1303
BamHI GGATCC 2 cut(s) 889, 1993
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 2 cut(s) 357, 1908
BbsI GAAGAC 1 cut(s) 2037
Bbv12I GWGCWC 3 cut(s) 357, 519, 1908
BbvCI CCTCAGC 4 cut(s) 12, 1011, 1712, 2423
BccI CCATC 5 cut(s) 670, 1157, 1787, 2045, 2455
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 2 cut(s) 379, 2206
BciVI GTATCC 1 cut(s) 2312
BclI TGATCA 1 cut(s) 1353
BcnI CCSGG 3 cut(s) 72, 2228, 2546
BcoDI GTCTC 5 cut(s) 431, 662, 783, 1184, 2060
BfmI CTRYAG 6 cut(s) 231, 859, 1783, 1914, 1959, 2286
BfoI RGCGCY 3 cut(s) 366, 859, 1939
BfuAI ACCTGC 1 cut(s) 1847
BfuI GTATCC 1 cut(s) 2312
BglII AGATCT 3 cut(s) 44, 1963, 2233
BlnI CCTAGG 1 cut(s) 851
BmcAI AGTACT 1 cut(s) 1895
Bme1390I CCNGG 5 cut(s) 72, 379, 2206, 2228, 2546
BmeT110I CYCGRG 3 cut(s) 350, 1325, 1836
BmgT120I GGNCC 1 cut(s) 1337
BmiI GGNNCC 4 cut(s) 571, 891, 1492, 1995
BmrFI CCNGG 5 cut(s) 72, 379, 2206, 2228, 2546
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 5 cut(s) 174, 755, 1615, 1783, 2059
BmuI ACTGGG 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 2037
BplI GAGNNNNNCTC 2 cut(s) 1830, 1862
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 6 cut(s) 12, 293, 1011, 1101, 1712, 2423
BpuEI CTTGAG 2 cut(s) 166, 1037
BpuMI CCSGG 3 cut(s) 72, 2228, 2546
BsaI GGTCTC 3 cut(s) 783, 1184, 2060
BsaJI CCNNGG 5 cut(s) 377, 826, 851, 1139, 2226
BsaXI ACNNNNNCTCC 5 cut(s) 269, 299, 2640, 2670, 2711
Bse118I RCCGGY 3 cut(s) 332, 554, 2331
Bse1I ACTGG 5 cut(s) 177, 388, 871, 1636, 1712
Bse3DI GCAATG 4 cut(s) 1001, 1094, 1776, 2417
BseBI CCWGG 2 cut(s) 379, 2206
BseDI CCNNGG 5 cut(s) 377, 826, 851, 1139, 2226
BseGI GGATG 9 cut(s) 111, 165, 279, 1134, 1630, 1701, 1774, 1795, 2074
BseMI GCAATG 4 cut(s) 1001, 1094, 1776, 2417
BseMII CTCAG 9 cut(s) 26, 80, 1025, 1535, 1703, 1921, 1995, 2414, 2700
BseNI ACTGG 5 cut(s) 177, 388, 871, 1636, 1712
BseRI GAGGAG 4 cut(s) 22, 25, 716, 2516
BseSI GKGCMC 1 cut(s) 1675
BseX3I CGGCCG 1 cut(s) 127
BseYI CCCAGC 2 cut(s) 472, 1339
BsgI GTGCAG 3 cut(s) 105, 288, 980
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 2 cut(s) 130, 444
BshNI GGYRCC 1 cut(s) 569
BsiEI CGRYCG 2 cut(s) 130, 444
BsiHKAI GWGCWC 3 cut(s) 357, 519, 1908
BsiHKCI CYCGRG 3 cut(s) 350, 1325, 1836
BsiSI CCGG 7 cut(s) 72, 333, 555, 2228, 2316, 2332, 2546
BslFI GGGAC 1 cut(s) 1598
BsmAI GTCTC 5 cut(s) 431, 662, 783, 1184, 2060
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 1598
Bso31I GGTCTC 3 cut(s) 783, 1184, 2060
BsoBI CYCGRG 3 cut(s) 350, 1325, 1836
Bsp1286I GDGCHC 4 cut(s) 357, 519, 1675, 1908
Bsp1407I TGTACA 1 cut(s) 1727
BspACI CCGC 6 cut(s) 81, 126, 272, 308, 476, 497
BspCNI CTCAG 9 cut(s) 25, 81, 1024, 1536, 1704, 1920, 1996, 2415, 2699
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 1444
BspLI GGNNCC 4 cut(s) 571, 891, 1492, 1995
BspMAI CTGCAG 5 cut(s) 235, 863, 1918, 1963, 2290
BspMI ACCTGC 1 cut(s) 1847
BspPI GGATC 8 cut(s) 463, 689, 884, 897, 1028, 1988, 2001, 2363
BspT107I GGYRCC 1 cut(s) 569
BspTNI GGTCTC 3 cut(s) 783, 1184, 2060
BsrBI CCGCTC 2 cut(s) 310, 497
BsrDI GCAATG 4 cut(s) 1001, 1094, 1776, 2417
BsrFI RCCGGY 3 cut(s) 332, 554, 2331
BsrGI TGTACA 1 cut(s) 1727
BsrI ACTGG 5 cut(s) 177, 388, 871, 1636, 1712
BssAI RCCGGY 3 cut(s) 332, 554, 2331
BssECI CCNNGG 5 cut(s) 377, 826, 851, 1139, 2226
BssT1I CCWWGG 3 cut(s) 826, 851, 1139
Bst2UI CCWGG 2 cut(s) 379, 2206
Bst4CI ACNGT 4 cut(s) 241, 259, 1399, 1500
Bst6I CTCTTC 2 cut(s) 623, 693
BstAPI GCANNNNNTGC 2 cut(s) 715, 1003
BstAUI TGTACA 1 cut(s) 1727
BstC8I GCNNGC 7 cut(s) 124, 334, 999, 1640, 1653, 1876, 1959
BstF5I GGATG 9 cut(s) 111, 165, 279, 1134, 1630, 1701, 1774, 1795, 2074
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 3 cut(s) 366, 859, 1939
BstHHI GCGC 3 cut(s) 365, 858, 1938
BstMAI GTCTC 5 cut(s) 431, 662, 783, 1184, 2060
BstMCI CGRYCG 2 cut(s) 130, 444
BstMWI GCNNNNNNNGC 7 cut(s) 16, 715, 1003, 1012, 1648, 1958, 2677
BstNI CCWGG 2 cut(s) 379, 2206
BstNSI RCATGY 2 cut(s) 2311, 2359
BstPAI GACNNNNGTC 1 cut(s) 443
BstSCI CCNGG 5 cut(s) 70, 377, 2204, 2226, 2544
BstSFI CTRYAG 6 cut(s) 231, 859, 1783, 1914, 1959, 2286
BstSLI GKGCMC 1 cut(s) 1675
BstUI CGCG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 2037
BstX2I RGATCY 6 cut(s) 44, 889, 1963, 1993, 2233, 2368
BstYI RGATCY 6 cut(s) 44, 889, 1963, 1993, 2233, 2368
BstZI CGGCCG 1 cut(s) 127
BsuI GTATCC 1 cut(s) 2312
BtgZI GCGATG 1 cut(s) 1176
BtsCI GGATG 9 cut(s) 111, 165, 279, 1134, 1630, 1701, 1774, 1795, 2074
BtsI GCAGTG 2 cut(s) 255, 2295
BtsIMutI CAGTG 8 cut(s) 184, 246, 255, 1496, 1541, 1629, 1705, 2295
BveI ACCTGC 1 cut(s) 1847
Cac8I GCNNGC 7 cut(s) 124, 334, 999, 1640, 1653, 1876, 1959
CaiI CAGNNNCTG 1 cut(s) 2414
CciI TCATGA 1 cut(s) 1444
CfoI GCGC 3 cut(s) 365, 858, 1938
Cfr10I RCCGGY 3 cut(s) 332, 554, 2331
Cfr13I GGNCC 1 cut(s) 1337
Csp6I GTAC 7 cut(s) 132, 847, 926, 1728, 1894, 2305, 2506
CspCI CAANNNNNGTGG 4 cut(s) 1347, 1382, 2138, 2173
CviQI GTAC 7 cut(s) 132, 847, 926, 1728, 1894, 2305, 2506
DraIII CACNNNGTG 2 cut(s) 424, 677
EaeI YGGCCR 2 cut(s) 127, 1301
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 623, 693
EarI CTCTTC 2 cut(s) 623, 693
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 2 cut(s) 355, 1906
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 3 cut(s) 826, 851, 1139
Eco147I AGGCCT 4 cut(s) 820, 1409, 1549, 1874
Eco24I GRGCYC 2 cut(s) 357, 1908
Eco31I GGTCTC 3 cut(s) 783, 1184, 2060
Eco47III AGCGCT 1 cut(s) 364
Eco52I CGGCCG 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 355, 1906
Eco57I CTGAAG 1 cut(s) 2385
Eco88I CYCGRG 3 cut(s) 350, 1325, 1836
EcoICRI GAGCTC 2 cut(s) 355, 1906
EcoRII CCWGG 2 cut(s) 377, 2204
EcoT14I CCWWGG 3 cut(s) 826, 851, 1139
EcoT22I ATGCAT 1 cut(s) 1776
EcoT38I GRGCYC 2 cut(s) 357, 1908
ErhI CCWWGG 3 cut(s) 826, 851, 1139
Esp3I CGTCTC 1 cut(s) 431
FalI AAGNNNNNCTT 8 cut(s) 128, 160, 620, 652, 641, 673, 1412, 1444
FaqI GGGAC 1 cut(s) 1598
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 2665
FbaI TGATCA 1 cut(s) 1353
FokI GGATG 9 cut(s) 98, 152, 266, 1121, 1637, 1688, 1761, 1782, 2081
FriOI GRGCYC 2 cut(s) 357, 1908
GlaI GCGC 3 cut(s) 364, 857, 1937
GsaI CCCAGC 2 cut(s) 476, 1343
GsuI CTGGAG 1 cut(s) 160
HaeII RGCGCY 3 cut(s) 366, 859, 1939
HapII CCGG 7 cut(s) 72, 333, 555, 2228, 2316, 2332, 2546
HhaI GCGC 3 cut(s) 365, 858, 1938
Hin6I GCGC 3 cut(s) 363, 856, 1936
HinP1I GCGC 3 cut(s) 363, 856, 1936
HincII GTYRAC 2 cut(s) 109, 2022
HindII GTYRAC 2 cut(s) 109, 2022
HindIII AAGCTT 3 cut(s) 528, 1950, 2151
HpaI GTTAAC 1 cut(s) 2022
HpaII CCGG 7 cut(s) 72, 333, 555, 2228, 2316, 2332, 2546
HphI GGTGA 8 cut(s) 313, 544, 634, 746, 1875, 2102, 2484, 2560
Hpy166II GTNNAC 8 cut(s) 109, 427, 1316, 1468, 1611, 2022, 2160, 2293
Hpy8I GTNNAC 8 cut(s) 109, 427, 1316, 1468, 1611, 2022, 2160, 2293
HpyCH4III ACNGT 4 cut(s) 241, 259, 1399, 1500
HpyCH4IV ACGT 1 cut(s) 1665
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 715, 1003, 1012, 1648, 1958, 2677
HpySE526I ACGT 1 cut(s) 1665
HspAI GCGC 3 cut(s) 363, 856, 1936
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 1353
KspAI GTTAAC 1 cut(s) 2022
LmnI GCTCC 4 cut(s) 83, 494, 703, 2648
LweI GCATC 5 cut(s) 174, 755, 1615, 1783, 2059
MaeII ACGT 1 cut(s) 1665
MaeIII GTNAC 8 cut(s) 235, 253, 445, 1090, 1291, 2090, 2266, 2698
MbiI CCGCTC 2 cut(s) 310, 497
MfeI CAATTG 2 cut(s) 1899, 2025
MflI RGATCY 6 cut(s) 44, 889, 1963, 1993, 2233, 2368
MhlI GDGCHC 4 cut(s) 357, 519, 1675, 1908
MlsI TGGCCA 1 cut(s) 1303
MluNI TGGCCA 1 cut(s) 1303
MlyI GAGTC 4 cut(s) 595, 1098, 1711, 2534
MmeI TCCRAC 3 cut(s) 369, 2021, 2626
Mox20I TGGCCA 1 cut(s) 1303
Mph1103I ATGCAT 1 cut(s) 1776
MroNI GCCGGC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 2681
MscI TGGCCA 1 cut(s) 1303
MseI TTAA 6 cut(s) 1269, 1412, 1763, 1851, 2021, 2076
MslI CAYNNNNRTG 4 cut(s) 212, 1668, 2624, 2705
Msp20I TGGCCA 1 cut(s) 1303
MspA1I CMGCKG 5 cut(s) 16, 272, 476, 1343, 2273
MspI CCGG 7 cut(s) 72, 333, 555, 2228, 2316, 2332, 2546
MspR9I CCNGG 5 cut(s) 72, 379, 2206, 2228, 2546
MunI CAATTG 2 cut(s) 1899, 2025
MvaI CCWGG 2 cut(s) 379, 2206
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 7 cut(s) 16, 715, 1003, 1012, 1648, 1958, 2677
NaeI GCCGGC 1 cut(s) 334
NciI CCSGG 3 cut(s) 72, 2228, 2546
NdeI CATATG 1 cut(s) 2665
NgoMIV GCCGGC 1 cut(s) 332
NlaIV GGNNCC 4 cut(s) 571, 891, 1492, 1995
NmuCI GTSAC 4 cut(s) 445, 1090, 2090, 2698
NsiI ATGCAT 1 cut(s) 1776
NspI RCATGY 2 cut(s) 2311, 2359
OliI CACNNNNGTG 2 cut(s) 212, 1668
PaeR7I CTCGAG 2 cut(s) 350, 1836
PagI TCATGA 1 cut(s) 1444
PaqCI CACCTGC 1 cut(s) 1847
PceI AGGCCT 4 cut(s) 820, 1409, 1549, 1874
PciI ACATGT 1 cut(s) 2307
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PdiI GCCGGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 2681
PflMI CCANNNNNTGG 1 cut(s) 1580
Ple19I CGATCG 1 cut(s) 444
PleI GAGTC 4 cut(s) 595, 1097, 1711, 2533
PpsI GAGTC 4 cut(s) 595, 1097, 1711, 2533
PscI ACATGT 1 cut(s) 2307
PshAI GACNNNNGTC 1 cut(s) 443
PshBI ATTAAT 1 cut(s) 1851
Psp124BI GAGCTC 2 cut(s) 357, 1908
Psp6I CCWGG 2 cut(s) 377, 2204
PspFI CCCAGC 2 cut(s) 472, 1339
PspGI CCWGG 2 cut(s) 377, 2204
PspN4I GGNNCC 4 cut(s) 571, 891, 1492, 1995
PspPI GGNCC 1 cut(s) 1337
PstI CTGCAG 5 cut(s) 235, 863, 1918, 1963, 2290
PstNI CAGNNNCTG 1 cut(s) 2414
PsuI RGATCY 6 cut(s) 44, 889, 1963, 1993, 2233, 2368
PvuI CGATCG 1 cut(s) 444
PvuII CAGCTG 3 cut(s) 16, 1343, 2273
RsaI GTAC 7 cut(s) 133, 848, 927, 1729, 1895, 2306, 2507
RsaNI GTAC 7 cut(s) 132, 847, 926, 1728, 1894, 2305, 2506
RseI CAYNNNNRTG 4 cut(s) 212, 1668, 2624, 2705
SacI GAGCTC 2 cut(s) 357, 1908
SaqAI TTAA 6 cut(s) 1269, 1412, 1763, 1851, 2021, 2076
Sau96I GGNCC 1 cut(s) 1337
ScaI AGTACT 1 cut(s) 1895
SchI GAGTC 4 cut(s) 595, 1098, 1711, 2534
ScrFI CCNGG 5 cut(s) 72, 379, 2206, 2228, 2546
SduI GDGCHC 4 cut(s) 357, 519, 1675, 1908
SfaNI GCATC 5 cut(s) 174, 755, 1615, 1783, 2059
SfcI CTRYAG 6 cut(s) 231, 859, 1783, 1914, 1959, 2286
Sfr274I CTCGAG 2 cut(s) 350, 1836
SlaI CTCGAG 2 cut(s) 350, 1836
SmiMI CAYNNNNRTG 4 cut(s) 212, 1668, 2624, 2705
SmlI CTYRAG 4 cut(s) 145, 350, 1016, 1836
SmoI CTYRAG 4 cut(s) 145, 350, 1016, 1836
SseBI AGGCCT 4 cut(s) 820, 1409, 1549, 1874
SsiI CCGC 6 cut(s) 81, 126, 272, 308, 476, 497
SstI GAGCTC 2 cut(s) 357, 1908
StuI AGGCCT 4 cut(s) 820, 1409, 1549, 1874
StyD4I CCNGG 5 cut(s) 70, 377, 2204, 2226, 2544
StyI CCWWGG 3 cut(s) 826, 851, 1139
TaaI ACNGT 4 cut(s) 241, 259, 1399, 1500
TaiI ACGT 1 cut(s) 1668
TaqI TCGA 9 cut(s) 312, 351, 546, 1249, 1756, 1837, 2347, 2483, 2565
TatI WGTACW 4 cut(s) 1727, 1893, 2304, 2505
TauI GCSGC 2 cut(s) 129, 275
Tru1I TTAA 6 cut(s) 1269, 1412, 1763, 1851, 2021, 2076
Tru9I TTAA 6 cut(s) 1269, 1412, 1763, 1851, 2021, 2076
TscAI CASTG 8 cut(s) 184, 246, 255, 1503, 1548, 1636, 1712, 2295
TseFI GTSAC 4 cut(s) 445, 1090, 2090, 2698
Tsp45I GTSAC 4 cut(s) 445, 1090, 2090, 2698
TspGWI ACGGA 2 cut(s) 158, 1310
TspRI CASTG 8 cut(s) 184, 246, 255, 1503, 1548, 1636, 1712, 2295
Van91I CCANNNNNTGG 1 cut(s) 1580
VspI ATTAAT 1 cut(s) 1851
XapI RAATTY 2 cut(s) 1217, 1241
XceI RCATGY 2 cut(s) 2311, 2359
XcmI CCANNNNNNNNNTGG 3 cut(s) 211, 385, 594
XhoI CTCGAG 2 cut(s) 350, 1836
XmaJI CCTAGG 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 2681
ZrmI AGTACT 1 cut(s) 1895
Zsp2I ATGCAT 1 cut(s) 1776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.