Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

501206 .. 537877

Gene Structure 36672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTGTTGAGGACCCAACTGCTCCTCACGGTCTGAGGCTATCGATTCAGGATTACCCTTTTGCCAATGATGGACTCCTCCTATGGGATGCCATTAAACAATGGGTCTCTGACTATGTAAACCACTACTACAGAGAGTCCACCCTTGTACAAACTGATCAAGAGCTCCAAGCATGGTGGACAGAGATCAGAACAGTAGGTCACGGAGACAAGAAGGACGAACCCTGGTGGCCTGACCTAAATACCCCTCAAGACCTCATCGACATCCTCACAACAATGCTTTGGGTTACATCCGGACACCATGCAGCAGTCAACTTTGCAAAGACGTGTTTTCAGTTACAGTTTTACACTTTTACTCCGATAACCATTAAATTGTCGTCGAGGGAGAAGTTACCTGACAAAAACTTGTATGGAAACATAGATGCAAATGTAAGAAACCAAGCTTTAACAAACGAGCCGAGTTTTAACAAGCTCGAGTTACTCATGGAAAATACGAGCTACTCACGACGAGTTGGACGAGTTGAATATATCCTTGCTCAAGCTCGGCTCGAAAGACCTCCTTTGAGTGTTTTGGGTAAGAGGGAATTAAAAAAACTTAATGAGATAAGTGGGAAAAAAATCCATAGAAATGGAATTCCGTCCCATATTTTTTACAACAGAAAATGGGACCTTGCATATGAATATGTCAGGGCCGATATAATATGGGCAGAGTACTATGCACATGCATCAATTAAGAGAAGGGTGGAAGATAATAGAAGATATATAGGAAAAGAGAAGAAAACTAAATGGTGGCCTTCTACCGACGCAAGGCAGCTTGGATGGGCAGGAATAAATAAAAGAAGGCTATATTCCTTTTTCTTTAGCGGTTATCATGTGTTCGAGCCTGGTAAAATGGAGTCTCAAGGTCCAAAAATGTTTAAGGAGAGCATAAAGGGCGTGGAAGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010597 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0071704 GO:1901568

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

316

Amino Acids

37.12

Weight (kDa)

9.1

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	1 - 135	1.3e-57	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	1 cut(s)	864
AcsI	RAATTY	1 cut(s)	633
AfaI	GTAC	2 cut(s)	150, 713
AfiI	CCNNNNNNNGG	2 cut(s)	85, 807
AflIII	ACRYGT	2 cut(s)	326, 945
AgsI	TTSAA	1 cut(s)	524
AjiI	CACGTC	1 cut(s)	327
AjnI	CCWGG	2 cut(s)	224, 883
AluBI	AGCT	6 cut(s)	166, 443, 472, 498, 542, 814
AluI	AGCT	6 cut(s)	166, 443, 472, 498, 542, 814
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	3 cut(s)	112, 201, 903
Ama87I	CYCGRG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	3 cut(s)	230, 690, 791
ApeKI	GCWGC	2 cut(s)	305, 811
ApoI	RAATTY	1 cut(s)	633
AspS9I	GGNCC	4 cut(s)	13, 667, 690, 905
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	3 cut(s)	13, 667, 905
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	317, 823
BccI	CCATC	2 cut(s)	65, 813
BciT130I	CCWGG	2 cut(s)	226, 885
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	112, 201, 903
BfmI	CTRYAG	1 cut(s)	130
BisI	GCNGC	2 cut(s)	306, 812
BlsI	GCNGC	2 cut(s)	307, 813
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	2 cut(s)	226, 885
Bme18I	GGWCC	3 cut(s)	13, 667, 905
BmeT110I	CYCGRG	1 cut(s)	473
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	4 cut(s)	13, 667, 690, 905
BmiI	GGNNCC	2 cut(s)	15, 668
BmrFI	CCNGG	2 cut(s)	226, 885
BmsI	GCATC	3 cut(s)	79, 412, 734
BpuEI	CTTGAG	3 cut(s)	234, 522, 885
Bsa29I	ATCGAT	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 807
BseAI	TCCGGA	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	226, 885
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	4 cut(s)	94, 264, 290, 824
BseLI	CCNNNNNNNGG	2 cut(s)	85, 807
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	15, 68
BseXI	GCAGC	2 cut(s)	317, 823
BshFI	GGCC	3 cut(s)	232, 692, 793
BshVI	ATCGAT	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	2 cut(s)	625, 680
BslI	CCNNNNNNNGG	2 cut(s)	85, 807
BsmAI	GTCTC	3 cut(s)	112, 201, 903
BsmFI	GGGAC	2 cut(s)	625, 680
BsnI	GGCC	3 cut(s)	232, 692, 793
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	157, 186
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	3 cut(s)	232, 692, 793
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	44
BspEI	TCCGGA	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	15, 668
BspTNI	GGTCTC	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	2 cut(s)	157, 186
Bst2UI	CCWGG	2 cut(s)	226, 885
Bst4CI	ACNGT	3 cut(s)	32, 196, 342
BstAUI	TGTACA	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	4 cut(s)	94, 264, 290, 824
BstKTI	GATC	2 cut(s)	160, 189
BstMAI	GTCTC	3 cut(s)	112, 201, 903
BstMBI	GATC	2 cut(s)	157, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	933
BstNI	CCWGG	2 cut(s)	226, 885
BstNSI	RCATGY	2 cut(s)	725, 949
BstSCI	CCNGG	2 cut(s)	224, 883
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	317, 823
BstXI	CCANNNNNNTGG	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	232, 692, 793
BsuTUI	ATCGAT	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	4 cut(s)	94, 264, 290, 824
Cfr13I	GGNCC	4 cut(s)	13, 667, 690, 905
ClaI	ATCGAT	1 cut(s)	44
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	2 cut(s)	149, 712
CspCI	CAANNNNNGTGG	2 cut(s)	158, 193
CviAII	CATG	6 cut(s)	174, 302, 484, 722, 872, 946
CviQI	GTAC	2 cut(s)	149, 712
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	159, 188
DpnII	GATC	2 cut(s)	157, 186
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	3 cut(s)	13, 667, 905
Eco53kI	GAGCTC	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	2 cut(s)	13, 667
EcoRI	GAATTC	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	224, 883
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	6 cut(s)	177, 305, 487, 725, 875, 949
FalI	AAGNNNNNCTT	2 cut(s)	544, 576
FaqI	GGGAC	2 cut(s)	625, 680
FatI	CATG	6 cut(s)	173, 301, 483, 721, 871, 945
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	306, 812
FokI	GGATG	4 cut(s)	101, 251, 277, 831
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	306, 812
GluI	GCNGC	2 cut(s)	306, 812
HaeIII	GGCC	3 cut(s)	232, 692, 793
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	812
Hin1II	CATG	6 cut(s)	177, 305, 487, 725, 875, 949
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	4 cut(s)	46, 75, 137, 896
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	4 cut(s)	121, 141, 180, 313
Hpy188I	TCNGA	4 cut(s)	36, 112, 191, 360
Hpy188III	TCNNGA	5 cut(s)	50, 161, 251, 294, 504
Hpy8I	GTNNAC	4 cut(s)	121, 141, 180, 313
Hpy99I	CGWCG	3 cut(s)	382, 510, 806
HpyAV	CCTTC	4 cut(s)	208, 732, 804, 834
HpyCH4III	ACNGT	3 cut(s)	32, 196, 342
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	6 cut(s)	305, 320, 425, 674, 719, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	933
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	6 cut(s)	177, 305, 487, 725, 875, 949
Kpn2I	TCCGGA	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	157, 186
LmnI	GCTCC	2 cut(s)	28, 171
Lsp1109I	GCAGC	2 cut(s)	317, 823
LweI	GCATC	3 cut(s)	79, 412, 734
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	5 cut(s)	200, 286, 336, 390, 477
MalI	GATC	2 cut(s)	159, 188
MboI	GATC	2 cut(s)	157, 186
MboII	GAAGA	3 cut(s)	758, 768, 787
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	4 cut(s)	371, 584, 633, 729
MlyI	GAGTC	3 cut(s)	69, 146, 905
MmeI	TCCRAC	1 cut(s)	493
Mph1103I	ATGCAT	1 cut(s)	727
MroI	TCCGGA	1 cut(s)	293
MseI	TTAA	8 cut(s)	96, 369, 446, 465, 587, 597, 732, 918
MslI	CAYNNNNRTG	2 cut(s)	275, 627
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	226, 885
MvaI	CCWGG	2 cut(s)	226, 885
MwoI	GCNNNNNNNGC	1 cut(s)	933
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	2 cut(s)	157, 186
NlaIII	CATG	6 cut(s)	177, 305, 487, 725, 875, 949
NlaIV	GGNNCC	2 cut(s)	15, 668
NmeAIII	GCCGAG	2 cut(s)	483, 523
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	2 cut(s)	725, 949
PaeR7I	CTCGAG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	307, 813
PleI	GAGTC	3 cut(s)	69, 145, 904
PpsI	GAGTC	3 cut(s)	69, 145, 904
PpuMI	RGGWCCY	2 cut(s)	13, 667
PscI	ACATGT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	2 cut(s)	13, 667
Psp6I	CCWGG	2 cut(s)	224, 883
PspGI	CCWGG	2 cut(s)	224, 883
PspN4I	GGNNCC	2 cut(s)	15, 668
PspPI	GGNCC	4 cut(s)	13, 667, 690, 905
PspPPI	RGGWCCY	2 cut(s)	13, 667
PspXI	VCTCGAGB	1 cut(s)	473
RsaI	GTAC	2 cut(s)	150, 713
RsaNI	GTAC	2 cut(s)	149, 712
RseI	CAYNNNNRTG	2 cut(s)	275, 627
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	8 cut(s)	96, 369, 446, 465, 587, 597, 732, 918
SatI	GCNGC	2 cut(s)	306, 812
Sau3AI	GATC	2 cut(s)	157, 186
Sau96I	GGNCC	4 cut(s)	13, 667, 690, 905
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	3 cut(s)	69, 146, 905
ScrFI	CCNGG	2 cut(s)	226, 885
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	3 cut(s)	79, 412, 734
SfcI	CTRYAG	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	473
SinI	GGWCC	3 cut(s)	13, 667, 905
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	275, 627
SmlI	CTYRAG	4 cut(s)	249, 473, 537, 900
SmoI	CTYRAG	4 cut(s)	249, 473, 537, 900
Sse9I	AATT	4 cut(s)	371, 584, 633, 729
SsiI	CCGC	1 cut(s)	864
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	224, 883
TaaI	ACNGT	3 cut(s)	32, 196, 342
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	6 cut(s)	44, 261, 380, 474, 549, 879
TasI	AATT	4 cut(s)	371, 584, 633, 729
TatI	WGTACW	2 cut(s)	148, 711
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	8 cut(s)	96, 369, 446, 465, 587, 597, 732, 918
Tru9I	TTAA	8 cut(s)	96, 369, 446, 465, 587, 597, 732, 918
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	305, 811
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	693
TspGWI	ACGGA	2 cut(s)	219, 627
VpaK11BI	GGWCC	3 cut(s)	13, 667, 905
XapI	RAATTY	1 cut(s)	633
XceI	RCATGY	2 cut(s)	725, 949
XhoI	CTCGAG	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	713
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.