Rorug07G0164500

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
13190522 .. 13191779
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0164500.1

Sequence Viewer

Length: 360 bp
ATGGTGGCGGTTGGCATTTTGCAATCGAAGGGAGTCGAGCAGAGGAAGGCGATAGAAGCTATTAAATCGTTGGGATCATCACGGGAAGAAGGGAAGAGATTGGTTTCTGTTCGGGATATGGTTTGTTGTGGAATTTGCGATTTCAGTAATTGGTTGGAAGAGCTTGGAGGTTCTATGCAAAGGAGAGTCTCAATTGTTTTTCTGCCATTGTTTATGTATCTGTTATTTGCTATTGGATTCGTGTCCTATTGTTATGCAGACTATCAACTCAGCCACGATCGAGAGATAAAGAGATTGGGTGTGTTTCCCGCGGTTCTGGAAAAGAAAGGACAAGAGGAGAAATTTAATCCCAAGGTTTGA

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

8.72

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45140 AT3G45140
fragaria_vesca FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 311
AciI CCGC 3 cut(s) 8, 309, 311
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 2 cut(s) 132, 341
AluBI AGCT 2 cut(s) 59, 163
AluI AGCT 2 cut(s) 59, 163
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 82
ApoI RAATTY 2 cut(s) 132, 341
BcoDI GTCTC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 309, 351
BseDI CCNNGG 2 cut(s) 309, 351
BseMII CTCAG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 74, 277
BspACI CCGC 3 cut(s) 8, 309, 311
BspCNI CTCAG 1 cut(s) 282
BspFNI CGCG 1 cut(s) 311
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 309, 351
BssMI GATC 2 cut(s) 74, 277
BssT1I CCWWGG 1 cut(s) 351
Bst6I CTCTTC 2 cut(s) 89, 153
BstDEI CTNAG 1 cut(s) 269
BstDSI CCRYGG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 2 cut(s) 77, 280
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 74, 277
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstUI CGCG 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 309
Cfr42I CCGCGG 1 cut(s) 312
CviJI RGCY 3 cut(s) 59, 163, 273
CviKI_1 RGCY 3 cut(s) 59, 163, 273
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 76, 279
DpnII GATC 2 cut(s) 74, 277
Eam1104I CTCTTC 2 cut(s) 89, 153
EarI CTCTTC 2 cut(s) 89, 153
Eco130I CCWWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaiI YATR 4 cut(s) 119, 176, 215, 255
FauI CCCGC 1 cut(s) 316
HinfI GANTC 3 cut(s) 33, 186, 237
Hpy188III TCNNGA 3 cut(s) 113, 281, 317
HpyAV CCTTC 3 cut(s) 22, 40, 83
HpyCH4V TGCA 3 cut(s) 22, 178, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 269
KspI CCGCGG 1 cut(s) 312
Kzo9I GATC 2 cut(s) 74, 277
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 1 cut(s) 302
MalI GATC 2 cut(s) 76, 279
MboI GATC 2 cut(s) 74, 277
MboII GAAGA 3 cut(s) 98, 106, 170
MfeI CAATTG 1 cut(s) 192
MluCI AATT 4 cut(s) 132, 148, 192, 341
MlyI GAGTC 2 cut(s) 42, 195
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 36, 161, 328
MseI TTAA 2 cut(s) 63, 345
MspA1I CMGCKG 1 cut(s) 311
MunI CAATTG 1 cut(s) 192
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 2 cut(s) 74, 277
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 237
Ple19I CGATCG 1 cut(s) 280
PleI GAGTC 2 cut(s) 41, 194
PpsI GAGTC 2 cut(s) 41, 194
PvuI CGATCG 1 cut(s) 280
SacII CCGCGG 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 63, 345
Sau3AI GATC 2 cut(s) 74, 277
SchI GAGTC 2 cut(s) 42, 195
SetI ASST 4 cut(s) 61, 165, 172, 357
Sfr303I CCGCGG 1 cut(s) 312
SgrBI CCGCGG 1 cut(s) 312
Sse9I AATT 4 cut(s) 132, 148, 192, 341
SsiI CCGC 3 cut(s) 8, 309, 311
StyI CCWWGG 1 cut(s) 351
TaqI TCGA 3 cut(s) 26, 36, 280
TasI AATT 4 cut(s) 132, 148, 192, 341
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 2 cut(s) 63, 345
Tru9I TTAA 2 cut(s) 63, 345
XapI RAATTY 2 cut(s) 132, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.