Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000211

Physical Location & Seq

Genomic Coordinates Reverse (-)

35307067 .. 35307909

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG323400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTCGAAATTGAAATTCAGGCCTTTAAAAGAAAGAAGATGTTTATGTTGGATTATCATGATCTGCTCATGCCTTATGTAAACAAAGTGAGAGAGATTGAAGGGACCACATTGTATGGTTCTAGGACACTGTTCTTCCTCACTGAAGAAGGCACATTGAGGCTTGTTGCCATTGAACTAACTCGCCCACGTGTTGGTGACAAGCCACAATGGAAGCAAGTGTTTACTCCTACCTGGGATGCCACTAGATGCTGGCTGTGGAGACTCGCTAAAGCGCATGTTTGTGCTCATGATGCTGGCTATCATCAGCTTGTCATCCACTGGCTGAGAACTCATTGTTGTACGGAGCCATATATAATTGCCGCCAATCGCCAATTAAGTGCAATGCATCCCATCTATAGACTTCTACTTCCTCATTTTTGGTACACAATGGAAATCAATGCCCTGGCTCGAGAAAGCCTCATCAATGCAGGTGGAATCATTGAGACCTCCTTCTCACCCGTAAAGTACTCCATTGAGCTCAGTTCAGCTGCTTATGACAAGTTCTGGCGCTTTGACATGGAAGCTTTGCCAGCAGATTTGATCAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

197

Amino Acids

23.24

Weight (kDa)

8.66

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	7 - 197	3.7e-103	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45140 AT3G45140
fragaria_vesca	FvH4_3g43530 FvH4_3g43540 FvH4_3g43540 FvH4_5g05680 FvH4_5g26250 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00380 FvH4_7g00420 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440 FvH4_7g00440
malus_domestica	MD02G1317800.v1.1 MD03G1021200.v1.1 MD07G1003600.v1.1 MD07G1003700.v1.1 MD07G1003900.v1.1 MD07G1004500.v1.1 MD11G1023100.v1.1
prunus_persica	Prupe.2G005300_v2.0.a1 Prupe.2G005300_v2.0.a1 Prupe.2G005500_v2.0.a1 Prupe.2G005800_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1 Prupe.6G018700_v2.0.a1
pyrus_communis	pycom02g26570 pycom02g26590 pycom02g26600 pycom07g00350 pycom11g01870
rosa_chinensis	RchiOBHm_Chr1g0314111 RchiOBHm_Chr1g0314131 RchiOBHm_Chr1g0314151 RchiOBHm_Chr5g0078061 RchiOBHm_Chr5g0078091 RchiOBHm_Chr6g0285041 RchiOBHm_Chr6g0285051 RchiOBHm_Chr7g0216951
rosa_laevigata	RLG00000002519 RLG00000002520 RLG00000002523 RLG00000002524 RLG00000002526 RLG00000012683 RLG00000030702 RLG00000030773 RLG00000030774 RLG00000030775 RLG00000036743 RLG00000036744 RLG00000036746 RLG00000036748
rosa_multiflora	Rmu_co8050096.1_g000001 Rmu_co8091784.1_g000001 Rmu_co8342063.1_g000001 Rmu_co8353481.1_g000001 Rmu_co8390647.1_g000001 Rmu_sc0000670.1_g000032 Rmu_sc0000854.1_g000025 Rmu_sc0002478.1_g000009 Rmu_sc0004992.1_g000003 Rmu_sc0006851.1_g000003 Rmu_sc0009311.1_g000001 Rmu_sc0009311.1_g000005 Rmu_ssc0000154.1_g000036 Rmu_ssc0000154.1_g000041
rosa_roxburghii	Rroxscaffold_1G00000310 Rroxscaffold_1G00000320 Rroxscaffold_1G00000330 Rroxscaffold_1G00000340 Rroxscaffold_1G00004130 Rroxscaffold_1G00004190 Rroxscaffold_3G00242690 Rroxscaffold_3G00242700 Rroxscaffold_3G00242710 Rroxscaffold_3G00242720 Rroxscaffold_3G00242740 Rroxscaffold_4G00332030 Rroxscaffold_4G00332050 Rroxscaffold_4G00332060 Rroxscaffold_6G00427990 Rroxscaffold_7G00183800 Rroxscaffold_7G00184080
rosa_rugosa	Rorug01G0000100 Rorug01G0000200 Rorug01G0130400 Rorug05G0458200 Rorug05G0458300 Rorug05G0458400 Rorug06G0170200 Rorug07G0164500 RorugPtG0006300 RorugPtG0006400 RorugPtG0006500
rosa_samantha	Rh1AG008700 Rh1AG008800 Rh1BG002100 Rh1BG002200 Rh1BG002700 Rh1BG012600 Rh1BG012900 Rh1BG120700 Rh1DG004500 Rh1DG004600 Rh1DG004700 Rh1DG004800 Rh1DG013000 Rh5BG535400 Rh5CG558800 Rh5DG547500 Rh5DG547600 Rh6AG281900 Rh6BG282500 Rh6CG284200 Rh6CG284300 Rh6CG284400 Rh6DG277500 Rh6DG277600 Rh7AG304700 Rh7BG296300 Rh7CG323200 Rh7CG323300 Rh7CG323400 Rh7CG323500 Rh7CG323800 Rh7DG304900
rosa_wichuraiana	Rw1G000380 Rw1G000390 Rw1G000400 Rw5G047570 Rw5G047580 Rw6G024220 Rw7G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	194
AciI	CCGC	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	191
AfaI	GTAC	3 cut(s)	343, 425, 509
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	14, 101, 176
AjnI	CCWGG	2 cut(s)	233, 444
AluBI	AGCT	4 cut(s)	310, 520, 530, 566
AluI	AGCT	4 cut(s)	310, 520, 530, 566
Alw21I	GWGCWC	2 cut(s)	289, 522
Alw26I	GTCTC	2 cut(s)	256, 479
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	2 cut(s)	277, 552
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	209, 489
AsuII	TTCGAA	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	522
BbrPI	CACGTG	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	289, 522
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	235, 446
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	256, 479
BfaI	CTAG	2 cut(s)	123, 246
BfmI	CTRYAG	1 cut(s)	397
BfoI	RGCGCY	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	2 cut(s)	363, 531
BlsI	GCNGC	2 cut(s)	364, 532
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	2 cut(s)	235, 446
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	106, 348
BmrFI	CCNGG	2 cut(s)	235, 446
BmsI	GCATC	4 cut(s)	229, 239, 283, 397
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
Bpu14I	TTCGAA	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	234, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	235, 446
BseDI	CCNNGG	2 cut(s)	234, 444
BseGI	GGATG	3 cut(s)	244, 315, 388
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	317, 535
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	517
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	289, 522
BsiHKCI	CYCGRG	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	256, 479
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	289, 522
Bsp143I	GATC	2 cut(s)	61, 582
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	318, 534
BspHI	TCATGA	2 cut(s)	58, 289
BspLI	GGNNCC	2 cut(s)	106, 348
BspMI	ACCTGC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	234, 444
BssMI	GATC	2 cut(s)	61, 582
Bst2UI	CCWGG	2 cut(s)	235, 446
Bst4CI	ACNGT	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	254, 298, 573
BstDEI	CTNAG	2 cut(s)	326, 521
BstF5I	GGATG	3 cut(s)	244, 315, 388
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	2 cut(s)	277, 552
BstKTI	GATC	2 cut(s)	64, 585
BstMAI	GTCTC	2 cut(s)	256, 479
BstMBI	GATC	2 cut(s)	61, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 572
BstNI	CCWGG	2 cut(s)	235, 446
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	233, 444
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	244, 315, 388
BtsIMutI	CAGTG	3 cut(s)	128, 141, 319
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	3 cut(s)	254, 298, 573
CciI	TCATGA	2 cut(s)	58, 289
CfoI	GCGC	2 cut(s)	277, 552
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	342, 424, 508
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	5 cut(s)	59, 70, 278, 290, 559
CviQI	GTAC	3 cut(s)	342, 424, 508
DdeI	CTNAG	2 cut(s)	326, 521
DpnI	GATC	2 cut(s)	63, 584
DpnII	GATC	2 cut(s)	61, 582
DraI	TTTAAA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	520
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	165
Eco72I	CACGTG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	233, 444
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	5 cut(s)	62, 73, 281, 293, 562
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	5 cut(s)	58, 69, 277, 289, 558
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	2 cut(s)	363, 531
FokI	GGATG	3 cut(s)	251, 302, 375
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	363, 531
FspBI	CTAG	2 cut(s)	123, 246
GlaI	GCGC	2 cut(s)	276, 551
GluI	GCNGC	2 cut(s)	363, 531
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	277, 552
Hin1II	CATG	5 cut(s)	62, 73, 281, 293, 562
Hin6I	GCGC	2 cut(s)	275, 550
HinP1I	GCGC	2 cut(s)	275, 550
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	2 cut(s)	264, 477
HphI	GGTGA	2 cut(s)	209, 489
Hpy166II	GTNNAC	3 cut(s)	82, 225, 426
Hpy188I	TCNGA	1 cut(s)	587
Hpy188III	TCNNGA	3 cut(s)	59, 290, 452
Hpy8I	GTNNAC	3 cut(s)	82, 225, 426
HpyAV	CCTTC	4 cut(s)	95, 143, 502, 582
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	383, 388, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 572
HpyF3I	CTNAG	2 cut(s)	326, 521
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	5 cut(s)	62, 73, 281, 293, 562
HspAI	GCGC	2 cut(s)	275, 550
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	61, 582
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	4 cut(s)	229, 239, 283, 397
MaeI	CTAG	2 cut(s)	123, 246
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	63, 584
MboI	GATC	2 cut(s)	61, 582
MboII	GAAGA	3 cut(s)	49, 127, 158
MhlI	GDGCHC	2 cut(s)	289, 522
MluCI	AATT	4 cut(s)	9, 15, 357, 374
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	149, 153, 423, 470, 499
Mph1103I	ATGCAT	1 cut(s)	390
MseI	TTAA	2 cut(s)	27, 377
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	235, 446
MvaI	CCWGG	2 cut(s)	235, 446
MwoI	GCNNNNNNNGC	2 cut(s)	293, 572
NdeII	GATC	2 cut(s)	61, 582
NlaIII	CATG	5 cut(s)	62, 73, 281, 293, 562
NlaIV	GGNNCC	2 cut(s)	106, 348
NmuCI	GTSAC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	450
PagI	TCATGA	2 cut(s)	58, 289
PaqCI	CACCTGC	1 cut(s)	461
PceI	AGGCCT	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	477
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	364, 532
PleI	GAGTC	1 cut(s)	258
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	233, 444
PspCI	CACGTG	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	233, 444
PspN4I	GGNNCC	2 cut(s)	106, 348
PspPI	GGNCC	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	3 cut(s)	343, 425, 509
RsaNI	GTAC	3 cut(s)	342, 424, 508
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	27, 377
SatI	GCNGC	2 cut(s)	363, 531
Sau3AI	GATC	2 cut(s)	61, 582
Sau96I	GGNCC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	2 cut(s)	235, 446
SduI	GDGCHC	2 cut(s)	289, 522
SetI	ASST	9 cut(s)	193, 236, 312, 475, 491, 522, 532, 568, 593
SfaNI	GCATC	4 cut(s)	229, 239, 283, 397
SfcI	CTRYAG	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	9, 15, 357, 374
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	2 cut(s)	123, 246
SstI	GAGCTC	1 cut(s)	522
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	233, 444
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	6, 451
TasI	AATT	4 cut(s)	9, 15, 357, 374
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	2 cut(s)	27, 377
Tru9I	TTAA	2 cut(s)	27, 377
TscAI	CASTG	3 cut(s)	135, 148, 326
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	3 cut(s)	135, 148, 326
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	450
XspI	CTAG	2 cut(s)	123, 246
ZrmI	AGTACT	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.