FvH4_7g10930

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000805
Physical Location & Seq
Forward (+)
10235275 .. 10235778
504 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10930.t1

Sequence Viewer

Length: 504 bp
ATGATATTTGAGCACTATGGTGTAGAGAAGTACCACTGGGAGTCTCATATTGGATCCGCTGATAATGTTCTTCGACTCCAAAAATACAATGCAGCTGAGGAGGAGAAATCTCACGTGGGTATTCCAGAGCACACAGACATGGACCTCAATACGATTATTTATCAAAACCATGTGAATGGCTTAGAGGTCAAAACAAAGCACGGTGATCAATGGATTGGCTTTGATGCCTCCCCTAACTCTTTTATATTCATGACTGGAGACGCCTTTCAGGTATGGAGCAATGATAGAATACAAGCTTGTCTGCATAGAGTGAAGAAGAGCGAAGATGCAGTAAGATACTCAGTTCTGCTCTTTACATTTCACAATGGGATCATAACTGTGCCCAAGGAATTGATTGATGAGGAACACCCTTTGAAATATAAGCCACTGAATAATCATGAATATCTTGCTTCACGAGTCGGTCAAACGTCCAGAGCTTCTATTAAGGAATTCTGTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

168

Amino Acids

19.27

Weight (kDa)

5.97

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 21 - 119 4e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AclWI GGATC 3 cut(s) 48, 61, 377
AcsI RAATTY 1 cut(s) 488
AcvI CACGTG 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 415
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 3 cut(s) 95, 296, 476
AluI AGCT 3 cut(s) 95, 296, 476
Alw21I GWGCWC 2 cut(s) 15, 132
Alw26I GTCTC 2 cut(s) 48, 252
AlwI GGATC 3 cut(s) 48, 61, 377
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 488
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 384
BamHI GGATCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 115
Bbv12I GWGCWC 2 cut(s) 15, 132
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 104
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 48, 252
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 214, 316
BmuI ACTGGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 41, 259
Bse3DI GCAATG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 87, 354
BseNI ACTGG 2 cut(s) 41, 259
BseRI GAGGAG 2 cut(s) 113, 116
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 1 cut(s) 104
BsiHKAI GWGCWC 2 cut(s) 15, 132
BsmAI GTCTC 2 cut(s) 48, 252
BsmBI CGTCTC 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 15, 132, 384
Bsp143I GATC 3 cut(s) 53, 205, 369
BspACI CCGC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 88, 353
BspHI TCATGA 2 cut(s) 249, 436
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 3 cut(s) 48, 61, 377
BspQI GCTCTTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 2 cut(s) 41, 259
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 53, 205, 369
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 203, 379
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 115
BstDEI CTNAG 3 cut(s) 96, 181, 340
BstKTI GATC 3 cut(s) 56, 208, 372
BstMAI GTCTC 2 cut(s) 48, 252
BstMBI GATC 3 cut(s) 53, 205, 369
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 34, 425
CciI TCATGA 2 cut(s) 249, 436
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 31
CviAII CATG 4 cut(s) 139, 170, 250, 437
CviJI RGCY 6 cut(s) 95, 180, 219, 296, 424, 476
CviKI_1 RGCY 6 cut(s) 95, 180, 219, 296, 424, 476
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 96, 181, 340
DpnI GATC 3 cut(s) 55, 207, 371
DpnII GATC 3 cut(s) 53, 205, 369
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 142
Eco72I CACGTG 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 4 cut(s) 142, 173, 253, 440
FatI CATG 4 cut(s) 138, 169, 249, 436
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 276
HgaI GACGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 4 cut(s) 142, 173, 253, 440
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 41, 75, 456
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 5 cut(s) 125, 250, 437, 453, 471
HpyCH4III ACNGT 2 cut(s) 203, 379
HpyCH4IV ACGT 2 cut(s) 114, 467
HpyCH4V TGCA 3 cut(s) 92, 304, 329
HpyF3I CTNAG 3 cut(s) 96, 181, 340
HpySE526I ACGT 2 cut(s) 114, 467
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 4 cut(s) 142, 173, 253, 440
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 53, 205, 369
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 5 cut(s) 22, 138, 240, 254, 484
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 214, 316
MaeII ACGT 2 cut(s) 114, 467
MalI GATC 3 cut(s) 55, 207, 371
MboI GATC 3 cut(s) 53, 205, 369
MboII GAAGA 4 cut(s) 62, 325, 328, 335
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 3 cut(s) 15, 132, 384
MluCI AATT 2 cut(s) 389, 488
MlyI GAGTC 3 cut(s) 50, 69, 465
MnlI CCTC 6 cut(s) 91, 94, 155, 178, 238, 394
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 4 cut(s) 18, 137, 174, 377
MspA1I CMGCKG 2 cut(s) 59, 95
NdeII GATC 3 cut(s) 53, 205, 369
NlaIII CATG 4 cut(s) 142, 173, 253, 440
NlaIV GGNNCC 1 cut(s) 55
OliI CACNNNNGTG 1 cut(s) 18
PagI TCATGA 2 cut(s) 249, 436
PciSI GCTCTTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 3 cut(s) 49, 69, 464
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
PpsI GAGTC 3 cut(s) 49, 69, 464
Ppu21I YACGTR 1 cut(s) 115
PspCI CACGTG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 4 cut(s) 18, 137, 174, 377
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 53, 205, 369
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 3 cut(s) 50, 69, 465
SduI GDGCHC 3 cut(s) 15, 132, 384
SetI ASST 8 cut(s) 97, 117, 147, 189, 273, 298, 470, 478
SfaNI GCATC 2 cut(s) 214, 316
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 4 cut(s) 18, 137, 174, 377
Sse9I AATT 2 cut(s) 389, 488
SsiI CCGC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 203, 379
TaiI ACGT 2 cut(s) 117, 470
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 449
TasI AATT 2 cut(s) 389, 488
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 2 cut(s) 41, 432
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 238, 453
TspRI CASTG 2 cut(s) 41, 432
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.